Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47357 * 274.65311 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.65437 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.65446 * 3 2 1 7 7 C 1.40012 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 162.13984 * 7 2 1 9 9 C 1.41035 * 119.99811 * 342.13829 * 7 2 1 10 10 C 1.40925 * 120.11636 * 155.01943 * 9 7 2 11 11 C 1.36256 * 119.87862 * 180.02562 * 10 9 7 12 12 C 1.39938 * 120.12007 * 0.02562 * 11 10 9 13 13 C 1.47987 * 119.88204 * 179.97438 * 12 11 10 14 14 C 1.39604 * 120.14340 * 359.72747 * 13 12 11 15 15 C 1.37938 * 119.85236 * 179.74065 * 14 13 12 16 16 C 1.38388 * 120.14193 * 0.55750 * 15 14 13 17 17 C 1.50700 * 119.85178 * 179.71733 * 16 15 14 18 18 C 1.50707 * 109.47249 * 269.97611 * 17 16 15 19 19 O 1.20828 * 119.99624 * 0.02562 * 18 17 16 20 20 O 1.34221 * 119.99736 * 179.97438 * 18 17 16 21 21 C 1.38390 * 120.29224 * 359.69492 * 16 15 14 22 22 C 1.37937 * 120.14712 * 0.02562 * 21 16 15 23 23 C 1.39941 * 120.23469 * 0.27667 * 12 11 10 24 24 C 1.36252 * 120.12157 * 359.43735 * 23 12 11 25 25 H 0.97003 * 119.99507 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.06058 * 0.05103 * 10 9 7 27 27 H 1.07995 * 119.93849 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.07156 * 0.02562 * 14 13 12 29 29 H 1.07993 * 119.92915 * 180.25171 * 15 14 13 30 30 H 1.08996 * 109.47535 * 29.97735 * 17 16 15 31 31 H 1.09007 * 109.47122 * 149.98068 * 17 16 15 32 32 H 0.96705 * 116.99512 * 179.97438 * 20 18 17 33 33 H 1.08006 * 119.92730 * 179.97438 * 21 16 15 34 34 H 1.07995 * 120.07265 * 179.97438 * 22 21 16 35 35 H 1.08001 * 119.93351 * 179.69955 * 23 12 11 36 36 H 1.08000 * 120.05936 * 180.25495 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4921 2.6223 0.7961 6 1 3.5853 1.4137 0.5994 7 6 2.0081 -1.2125 0.0005 8 1 3.0490 -1.2352 -0.2863 9 6 1.3538 -2.4043 0.3757 10 6 1.8230 -3.6469 -0.0953 11 6 1.1869 -4.7953 0.2697 12 6 0.0695 -4.7423 1.1104 13 6 -0.6177 -5.9927 1.5032 14 6 -0.1569 -7.2235 1.0323 15 6 -0.7986 -8.3857 1.4065 16 6 -1.9040 -8.3326 2.2374 17 6 -2.6040 -9.6059 2.6370 18 6 -3.6856 -9.9201 1.6357 19 8 -3.8688 -9.1855 0.6940 20 8 -4.4446 -11.0163 1.7895 21 6 -2.3690 -7.1153 2.7035 22 6 -1.7329 -5.9461 2.3415 23 6 -0.4044 -3.5105 1.5759 24 6 0.2277 -2.3567 1.2217 25 1 -0.4849 0.8401 -0.0004 26 1 2.6853 -3.6889 -0.7442 27 1 1.5453 -5.7480 -0.0910 28 1 0.7030 -7.2659 0.3801 29 1 -0.4408 -9.3388 1.0462 30 1 -1.8840 -10.4238 2.6626 31 1 -3.0482 -9.4818 3.6247 32 1 -5.1259 -11.1758 1.1219 33 1 -3.2325 -7.0806 3.3514 34 1 -2.0971 -4.9968 2.7056 35 1 -1.2701 -3.4749 2.2206 36 1 -0.1363 -1.4069 1.5849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240973566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = -61.239812 kcal Electronic energy + Delta-G solvation = -20079.311299 eV Core-core repulsion = 16878.171606 eV Total energy + Delta-G solvation = -3201.139693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36906 -38.89785 -37.35346 -36.14041 -34.17230 -32.71080 -30.75209 -30.07597 -29.37070 -27.57651 -24.90930 -22.67563 -22.53244 -21.06170 -20.31770 -19.73592 -18.15244 -17.52387 -16.64907 -16.19956 -16.03566 -15.34178 -14.99678 -14.56872 -14.09256 -13.35791 -13.25986 -13.19593 -13.09123 -12.75074 -12.32039 -12.25510 -12.06224 -11.87984 -11.56722 -11.35524 -11.21693 -11.02551 -10.75286 -10.61750 -10.51835 -10.46270 -9.78543 -9.43686 -9.31581 -8.55744 -8.47039 -7.65003 -7.08589 -6.91503 -4.46072 1.47380 1.92332 2.17647 2.68906 2.97187 2.97879 3.03714 3.06039 3.27849 3.78791 4.25459 4.67213 4.71564 4.93911 5.29081 5.38905 5.39995 5.42874 5.63049 5.70694 5.90500 6.02939 6.18446 6.20668 6.39201 6.53262 6.53694 6.79518 6.85685 6.90747 6.93823 6.99695 7.15972 7.33872 7.47824 7.50091 7.82998 7.84183 7.91219 8.06002 8.13015 8.46964 8.69463 8.82137 9.96217 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.045447 B = 0.002975 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.960935 B = 9408.436217 C = 9660.957832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.446 4.446 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.231 4.231 11 C -0.061 4.061 12 C -0.209 4.209 13 C 0.033 3.967 14 C -0.147 4.147 15 C -0.090 4.090 16 C -0.133 4.133 17 C -0.060 4.060 18 C 0.471 3.529 19 O -0.500 6.500 20 O -0.525 6.525 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.073 4.073 24 C -0.173 4.173 25 H 0.285 0.715 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.407 0.593 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -12.955 5.037 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.473 4.473 8 H 0.101 0.899 9 C 0.117 3.883 10 C -0.251 4.251 11 C -0.079 4.079 12 C -0.210 4.210 13 C 0.033 3.967 14 C -0.165 4.165 15 C -0.108 4.108 16 C -0.133 4.133 17 C -0.097 4.097 18 C 0.313 3.687 19 O -0.386 6.386 20 O -0.337 6.337 21 C -0.108 4.108 22 C -0.164 4.164 23 C -0.092 4.092 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.265 0.735 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.512 -12.489 5.046 14.205 hybrid contribution -0.251 0.672 -0.610 0.942 sum -4.763 -11.817 4.436 13.491 Atomic orbital electron populations 1.69822 1.07798 1.29817 1.32572 1.26048 0.94801 1.01765 0.92090 0.86239 0.80802 0.80164 0.79291 1.19328 1.19798 1.18184 1.19729 0.98319 0.91332 1.37969 0.89948 1.17743 0.90737 0.92102 0.87742 1.20693 1.04277 0.92892 1.07197 1.20409 0.94655 0.96708 0.96131 1.18088 1.01736 0.90901 1.10315 1.19056 0.92455 0.92965 0.92188 1.21131 1.01377 0.91747 1.02264 1.20716 0.95398 0.97840 0.96887 1.18953 0.98334 0.92728 1.03289 1.20161 0.94389 0.97900 0.97298 1.23735 0.81478 0.77501 0.85990 1.90777 1.67654 1.48490 1.31705 1.84541 1.47951 1.45285 1.55929 1.20730 0.98634 0.92001 0.99452 1.21151 0.97026 0.97741 1.00443 1.20537 0.97807 0.92384 0.98423 1.20994 0.99678 0.96983 1.01581 0.90401 0.88704 0.88905 0.86244 0.87130 0.87361 0.87358 0.73495 0.87107 0.86155 0.88944 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.30 10.97 55.55 0.61 -18.69 16 2 C 0.07 1.76 5.13 -17.33 -0.09 1.67 16 3 Si 0.91 17.74 29.60 -169.99 -5.03 12.71 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.35 9.03 -37.86 -0.34 -11.69 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.12 3.11 5.57 -106.80 -0.59 2.51 16 10 C -0.23 -5.57 9.73 -39.28 -0.38 -5.95 16 11 C -0.06 -1.37 9.36 -39.66 -0.37 -1.74 16 12 C -0.21 -4.72 5.90 -104.63 -0.62 -5.34 16 13 C 0.03 0.67 5.88 -104.88 -0.62 0.05 16 14 C -0.15 -2.62 9.43 -39.18 -0.37 -2.99 16 15 C -0.09 -1.39 9.68 -39.64 -0.38 -1.77 16 16 C -0.13 -1.92 4.38 -104.51 -0.46 -2.38 16 17 C -0.06 -0.62 5.93 -29.03 -0.17 -0.80 16 18 C 0.47 5.58 8.32 36.01 0.30 5.88 16 19 O -0.50 -8.11 16.79 -18.75 -0.31 -8.42 16 20 O -0.52 -4.54 13.42 -39.23 -0.53 -5.07 16 21 C -0.09 -1.40 9.68 -39.64 -0.38 -1.78 16 22 C -0.15 -2.63 9.43 -39.18 -0.37 -3.00 16 23 C -0.07 -1.71 9.36 -39.66 -0.37 -2.08 16 24 C -0.17 -4.40 8.63 -39.28 -0.34 -4.74 16 25 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 26 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 27 H 0.09 1.82 6.18 -52.49 -0.32 1.50 16 28 H 0.12 2.00 6.18 -52.48 -0.32 1.67 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.11 0.87 8.08 -51.93 -0.42 0.46 16 31 H 0.11 0.88 8.08 -51.92 -0.42 0.46 16 32 H 0.41 1.95 9.10 45.56 0.41 2.36 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.12 2.09 6.18 -52.49 -0.32 1.76 16 35 H 0.09 1.94 6.18 -52.49 -0.32 1.62 16 36 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -30.18 314.08 -8.95 -39.13 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.86 Total: 9.74 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -5.56 Total: -34.14 kcal Atomic # 7 Polarization: -19.30 SS G_CDS: 0.61 Total: -18.69 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.84 Total: -13.49 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.18 -8.95 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240973566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.106 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds