Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47357 * 274.65311 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.65437 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.65446 * 3 2 1 7 7 C 1.40012 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 162.13984 * 7 2 1 9 9 C 1.41035 * 119.99811 * 342.13829 * 7 2 1 10 10 C 1.40925 * 120.11636 * 155.01943 * 9 7 2 11 11 C 1.36256 * 119.87862 * 180.02562 * 10 9 7 12 12 C 1.39938 * 120.12007 * 0.02562 * 11 10 9 13 13 C 1.47987 * 119.88204 * 179.97438 * 12 11 10 14 14 C 1.39604 * 120.14340 * 359.72747 * 13 12 11 15 15 C 1.37938 * 119.85236 * 179.74065 * 14 13 12 16 16 C 1.38388 * 120.14193 * 0.55750 * 15 14 13 17 17 C 1.50700 * 119.85178 * 179.71733 * 16 15 14 18 18 C 1.50707 * 109.47249 * 269.97611 * 17 16 15 19 19 O 1.20828 * 119.99624 * 0.02562 * 18 17 16 20 20 O 1.34221 * 119.99736 * 179.97438 * 18 17 16 21 21 C 1.38390 * 120.29224 * 359.69492 * 16 15 14 22 22 C 1.37937 * 120.14712 * 0.02562 * 21 16 15 23 23 C 1.39941 * 120.23469 * 0.27667 * 12 11 10 24 24 C 1.36252 * 120.12157 * 359.43735 * 23 12 11 25 25 H 0.97003 * 119.99507 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.06058 * 0.05103 * 10 9 7 27 27 H 1.07995 * 119.93849 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.07156 * 0.02562 * 14 13 12 29 29 H 1.07993 * 119.92915 * 180.25171 * 15 14 13 30 30 H 1.08996 * 109.47535 * 29.97735 * 17 16 15 31 31 H 1.09007 * 109.47122 * 149.98068 * 17 16 15 32 32 H 0.96705 * 116.99512 * 179.97438 * 20 18 17 33 33 H 1.08006 * 119.92730 * 179.97438 * 21 16 15 34 34 H 1.07995 * 120.07265 * 179.97438 * 22 21 16 35 35 H 1.08001 * 119.93351 * 179.69955 * 23 12 11 36 36 H 1.08000 * 120.05936 * 180.25495 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4921 2.6223 0.7961 6 1 3.5853 1.4137 0.5994 7 6 2.0081 -1.2125 0.0005 8 1 3.0490 -1.2352 -0.2863 9 6 1.3538 -2.4043 0.3757 10 6 1.8230 -3.6469 -0.0953 11 6 1.1869 -4.7953 0.2697 12 6 0.0695 -4.7423 1.1104 13 6 -0.6177 -5.9927 1.5032 14 6 -0.1569 -7.2235 1.0323 15 6 -0.7986 -8.3857 1.4065 16 6 -1.9040 -8.3326 2.2374 17 6 -2.6040 -9.6059 2.6370 18 6 -3.6856 -9.9201 1.6357 19 8 -3.8688 -9.1855 0.6940 20 8 -4.4446 -11.0163 1.7895 21 6 -2.3690 -7.1153 2.7035 22 6 -1.7329 -5.9461 2.3415 23 6 -0.4044 -3.5105 1.5759 24 6 0.2277 -2.3567 1.2217 25 1 -0.4849 0.8401 -0.0004 26 1 2.6853 -3.6889 -0.7442 27 1 1.5453 -5.7480 -0.0910 28 1 0.7030 -7.2659 0.3801 29 1 -0.4408 -9.3388 1.0462 30 1 -1.8840 -10.4238 2.6626 31 1 -3.0482 -9.4818 3.6247 32 1 -5.1259 -11.1758 1.1219 33 1 -3.2325 -7.0806 3.3514 34 1 -2.0971 -4.9968 2.7056 35 1 -1.2701 -3.4749 2.2206 36 1 -0.1363 -1.4069 1.5849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240973566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = -77.373057 kcal Electronic energy + Delta-G solvation = -20080.010889 eV Core-core repulsion = 16878.171606 eV Total energy + Delta-G solvation = -3201.839283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32264 -40.29280 -38.96873 -37.02305 -35.85413 -34.07720 -32.19297 -31.61438 -31.06699 -28.99442 -26.51481 -24.13430 -23.83847 -22.34093 -21.97676 -21.16549 -19.34726 -19.00472 -17.90509 -17.36145 -17.05835 -16.90305 -16.36812 -15.92232 -15.61322 -14.90555 -14.79351 -14.51319 -14.35868 -14.20898 -13.75826 -13.71393 -13.47786 -13.14007 -12.94247 -12.79747 -12.61017 -12.46235 -12.32574 -11.97176 -11.92755 -11.59409 -11.52521 -11.16330 -11.07559 -10.10914 -9.75801 -9.50946 -8.81810 -8.63844 -6.34605 0.06332 0.62114 1.10655 1.17678 1.30586 1.37132 1.50408 1.56117 2.16706 2.27537 2.66825 3.15145 3.70895 3.76672 3.93292 4.13470 4.21522 4.32475 4.37864 4.51600 4.59090 4.64052 4.68964 4.77334 4.96675 5.07363 5.19217 5.20557 5.29809 5.35732 5.50931 5.63431 5.68168 5.69594 5.75224 5.96843 6.04592 6.23908 6.28225 6.28932 6.60893 6.83583 6.96306 7.07688 8.22808 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.045447 B = 0.002975 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.960935 B = 9408.436217 C = 9660.957832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.246 4.246 11 C -0.070 4.070 12 C -0.202 4.202 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.061 4.061 18 C 0.481 3.519 19 O -0.553 6.553 20 O -0.512 6.512 21 C -0.097 4.097 22 C -0.155 4.155 23 C -0.085 4.085 24 C -0.194 4.194 25 H 0.292 0.708 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.425 0.575 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -15.870 6.113 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.084 3.916 10 C -0.266 4.266 11 C -0.088 4.088 12 C -0.203 4.203 13 C -0.008 4.008 14 C -0.169 4.169 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.098 4.098 18 C 0.325 3.675 19 O -0.444 6.444 20 O -0.326 6.326 21 C -0.115 4.115 22 C -0.173 4.173 23 C -0.103 4.103 24 C -0.214 4.214 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.287 0.713 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.372 -15.454 6.134 17.473 hybrid contribution -0.206 1.125 -0.841 1.420 sum -5.579 -14.329 5.292 16.262 Atomic orbital electron populations 1.69872 1.09261 1.31056 1.33731 1.26904 0.95515 1.04898 0.91000 0.85127 0.79212 0.75466 0.79554 1.18530 1.18858 1.18013 1.19939 0.98615 0.92464 1.40436 0.90006 1.18081 0.91587 0.93244 0.88707 1.20909 1.04919 0.93083 1.07647 1.20708 0.94594 0.97370 0.96090 1.18480 1.01208 0.91932 1.08711 1.19061 0.94217 0.92564 0.94983 1.21323 1.01671 0.91884 1.02054 1.21127 0.95395 0.98292 0.96565 1.19471 0.97185 0.94255 1.00612 1.20303 0.94709 0.96612 0.98133 1.23852 0.81351 0.77219 0.85069 1.90786 1.69310 1.50342 1.33940 1.84490 1.48056 1.43622 1.56441 1.21104 0.99203 0.91519 0.99680 1.21303 0.96769 0.98963 1.00221 1.20769 0.98325 0.92380 0.98844 1.20974 1.00595 0.97117 1.02674 0.89722 0.87902 0.86157 0.85754 0.83878 0.84056 0.84232 0.71349 0.84200 0.86472 0.87359 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.48 10.97 21.84 0.24 -42.24 16 2 C 0.03 1.67 5.13 85.28 0.44 2.11 16 3 Si 0.99 37.47 29.60 68.60 2.03 39.50 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.49 -26.17 9.03 23.39 0.21 -25.96 16 8 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 9 C 0.09 4.75 5.57 -21.28 -0.12 4.63 16 10 C -0.25 -12.38 9.73 22.47 0.22 -12.16 16 11 C -0.07 -3.19 9.36 22.22 0.21 -2.99 16 12 C -0.20 -9.31 5.90 -19.87 -0.12 -9.43 16 13 C -0.01 -0.32 5.88 -20.03 -0.12 -0.44 16 14 C -0.15 -5.12 9.43 22.53 0.21 -4.91 16 15 C -0.10 -2.61 9.68 22.23 0.22 -2.40 16 16 C -0.12 -2.86 4.38 -19.79 -0.09 -2.95 16 17 C -0.06 -0.93 5.93 29.10 0.17 -0.76 16 18 C 0.48 9.36 8.32 71.24 0.59 9.95 16 19 O -0.55 -16.44 16.79 21.96 0.37 -16.07 16 20 O -0.51 -6.58 13.42 -51.33 -0.69 -7.27 16 21 C -0.10 -2.74 9.68 22.23 0.22 -2.52 16 22 C -0.15 -5.43 9.43 22.53 0.21 -5.22 16 23 C -0.08 -4.15 9.36 22.22 0.21 -3.94 16 24 C -0.19 -10.49 8.63 22.47 0.19 -10.30 16 25 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 26 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 27 H 0.12 4.70 6.18 -2.91 -0.02 4.68 16 28 H 0.12 3.96 6.18 -2.91 -0.02 3.94 16 29 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 30 H 0.14 1.35 8.08 -2.39 -0.02 1.33 16 31 H 0.14 1.38 8.08 -2.38 -0.02 1.37 16 32 H 0.43 2.43 9.10 -74.05 -0.67 1.75 16 33 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.12 4.06 6.18 -2.91 -0.02 4.04 16 35 H 0.11 4.75 6.18 -2.91 -0.02 4.73 16 36 H 0.10 5.75 6.18 -2.91 -0.02 5.74 16 Total: -1.00 -69.51 314.08 5.06 -64.45 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.46 Total: 28.93 kcal Atomic # 6 Polarization: -69.95 SS G_CDS: 2.66 Total: -67.29 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.24 Total: -42.24 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.32 Total: -23.34 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -69.51 5.06 -64.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240973566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.925 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds