Wall clock time and date at job start Tue Mar 31 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38163 * 119.90609 * 2 1 4 4 C 1.38016 * 120.27711 * 179.97438 * 3 2 1 5 5 C 1.39703 * 120.08591 * 0.02562 * 4 3 2 6 6 C 1.47749 * 120.08665 * 180.02562 * 5 4 3 7 7 O 1.21464 * 119.99910 * 179.97438 * 6 5 4 8 8 O 1.34709 * 120.00137 * 0.02562 * 6 5 4 9 9 C 1.39416 * 119.82053 * 359.77013 * 5 4 3 10 10 C 1.39078 * 119.72417 * 0.47753 * 9 5 4 11 11 C 1.48428 * 120.04603 * 179.77365 * 10 9 5 12 12 C 1.39721 * 119.99950 * 129.70496 * 11 10 9 13 13 C 1.38390 * 120.38086 * 179.97438 * 12 11 10 14 14 C 1.37721 * 120.37915 * 0.02562 * 13 12 11 15 15 C 1.40756 * 119.98499 * 359.77091 * 14 13 12 16 16 C 1.41421 * 120.18466 * 180.25700 * 15 14 13 17 17 H 1.08001 * 120.00078 * 204.61914 * 16 15 14 18 18 C 1.39934 * 120.00357 * 24.62340 * 16 15 14 19 19 N 1.30824 * 119.99965 * 17.77021 * 18 16 15 20 20 Si 1.86803 * 120.00030 * 197.77859 * 18 16 15 21 21 H 1.48492 * 109.47186 * 59.99598 * 20 18 16 22 22 H 1.48504 * 109.46642 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46788 * 299.99520 * 20 18 16 24 24 C 1.38723 * 120.00050 * 309.72347 * 11 10 9 25 25 H 1.09001 * 109.46888 * 269.97677 * 1 2 3 26 26 H 1.08994 * 109.47031 * 29.98379 * 1 2 3 27 27 H 1.09007 * 109.46649 * 149.97744 * 1 2 3 28 28 H 1.07993 * 119.86619 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.95369 * 180.02562 * 4 3 2 30 30 H 0.96697 * 117.00308 * 179.97438 * 8 6 5 31 31 H 1.08001 * 120.13632 * 180.25639 * 9 5 4 32 32 H 1.08001 * 119.80762 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.81233 * 180.02562 * 13 12 11 34 34 H 1.08000 * 120.00812 * 180.02562 * 14 13 12 35 35 H 0.96995 * 120.00309 * 180.02562 * 19 18 16 36 36 H 1.08005 * 120.18671 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1977 0.0000 4 6 3.5760 1.2066 0.0005 5 6 4.2842 0.0023 0.0005 6 6 5.7616 0.0119 0.0017 7 8 6.3757 -1.0361 0.0021 8 8 6.4277 1.1828 0.0032 9 6 3.5930 -1.2084 0.0049 10 6 2.2022 -1.2085 -0.0009 11 6 1.4591 -2.4933 -0.0015 12 6 0.4363 -2.7092 0.9256 13 6 -0.2620 -3.9040 0.9318 14 6 0.0436 -4.8941 0.0246 15 6 1.0681 -4.6916 -0.9191 16 6 1.3818 -5.7033 -1.8562 17 1 2.3670 -5.7447 -2.2967 18 6 0.4157 -6.6507 -2.2128 19 7 -0.8488 -6.4189 -1.9698 20 14 0.9314 -8.2465 -3.0354 21 1 1.8504 -8.9916 -2.1380 22 1 -0.2713 -9.0736 -3.3088 23 1 1.6249 -7.9432 -4.3129 24 6 1.7803 -3.4800 -0.9222 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6522 2.1308 0.0004 29 1 4.1092 2.1458 0.0009 30 1 7.3936 1.1385 0.0043 31 1 4.1353 -2.1424 0.0091 32 1 0.1888 -1.9389 1.6410 33 1 -1.0512 -4.0609 1.6523 34 1 -0.5055 -5.8240 0.0345 35 1 -1.5184 -7.0757 -2.2166 36 1 2.5703 -3.3163 -1.6403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241000994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:41 Heat of formation + Delta-G solvation = -78.097369 kcal Electronic energy + Delta-G solvation = -20643.688014 eV Core-core repulsion = 17441.817322 eV Total energy + Delta-G solvation = -3201.870692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50407 -40.35323 -38.83185 -37.11695 -35.71594 -34.03022 -33.02301 -31.74608 -29.77803 -28.65590 -27.16229 -24.64489 -23.98155 -22.70309 -22.06927 -21.37930 -19.43773 -18.80985 -18.02240 -17.19854 -16.69598 -16.55504 -16.30104 -16.24478 -15.72225 -15.26330 -14.90883 -14.53781 -14.39149 -14.22605 -13.89447 -13.53921 -13.08958 -13.06085 -12.97498 -12.84434 -12.61778 -12.56640 -12.42447 -12.28225 -12.10846 -11.73842 -11.41353 -11.32824 -11.02865 -10.08438 -9.82292 -9.41219 -8.94546 -8.65069 -6.36989 -0.34670 0.19429 0.98093 1.09435 1.35996 1.46580 1.49470 1.57058 2.02644 2.19476 2.66359 2.81644 3.67916 3.73761 3.91886 3.95666 4.12474 4.21778 4.41935 4.51373 4.60694 4.79317 4.81676 4.87903 4.93747 5.01161 5.11969 5.22073 5.23471 5.30283 5.34516 5.43208 5.53931 5.58169 5.71030 5.90031 5.98838 6.05764 6.14538 6.35684 6.66225 6.92053 6.94925 6.99206 8.31767 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.004455 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.604932 B = 6283.696142 C = 7375.151166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C -0.125 4.125 4 C -0.052 4.052 5 C -0.152 4.152 6 C 0.536 3.464 7 O -0.556 6.556 8 O -0.496 6.496 9 C -0.061 4.061 10 C -0.059 4.059 11 C -0.032 4.032 12 C -0.208 4.208 13 C -0.108 4.108 14 C -0.183 4.183 15 C 0.080 3.920 16 C -0.506 4.506 17 H 0.068 0.932 18 C 0.039 3.961 19 N -0.823 5.823 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.225 4.225 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.433 0.567 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.289 0.711 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 15.337 3.700 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.143 4.143 4 C -0.069 4.069 5 C -0.153 4.153 6 C 0.382 3.618 7 O -0.449 6.449 8 O -0.310 6.310 9 C -0.080 4.080 10 C -0.059 4.059 11 C -0.032 4.032 12 C -0.227 4.227 13 C -0.126 4.126 14 C -0.203 4.203 15 C 0.078 3.922 16 C -0.536 4.536 17 H 0.086 0.914 18 C -0.176 4.176 19 N -0.449 5.449 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.245 4.245 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.295 0.705 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.939 15.004 3.658 15.938 hybrid contribution 0.938 -1.478 -0.553 1.836 sum 4.877 13.526 3.105 14.710 Atomic orbital electron populations 1.21012 0.89534 1.03405 1.03545 1.20566 0.97603 0.91826 0.94024 1.21361 0.93781 0.98110 1.01007 1.21726 0.94424 0.97150 0.93630 1.18993 0.89137 0.95090 1.12112 1.20899 0.88905 0.81048 0.70955 1.90888 1.70561 1.35033 1.48383 1.84484 1.28687 1.32701 1.85097 1.21228 0.93520 0.97300 0.95917 1.18865 0.92112 0.93246 1.01697 1.18470 0.96300 0.92052 0.96377 1.20708 1.00370 0.98728 1.02881 1.20942 0.99223 0.94126 0.98331 1.21360 1.02120 0.99680 0.97112 1.17853 0.91487 0.91448 0.91461 1.19759 0.99274 1.11389 1.23160 0.91356 1.26668 0.93940 1.02101 0.94854 1.69847 1.01953 1.35436 1.37674 0.85308 0.79011 0.76741 0.78991 1.18713 1.18703 1.18638 1.21120 1.05504 0.94696 1.03167 0.89278 0.88832 0.92901 0.81025 0.81340 0.70464 0.87313 0.85921 0.86471 0.87960 0.90037 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.44 71.24 0.60 -2.40 16 2 C -0.04 -1.14 5.88 -19.60 -0.12 -1.26 16 3 C -0.13 -2.64 9.67 22.20 0.21 -2.42 16 4 C -0.05 -1.12 9.61 22.57 0.22 -0.90 16 5 C -0.15 -4.45 5.87 -20.13 -0.12 -4.57 16 6 C 0.54 14.90 8.27 70.34 0.58 15.48 16 7 O -0.56 -19.87 17.13 19.95 0.34 -19.53 16 8 O -0.50 -8.64 12.67 -56.18 -0.71 -9.36 16 9 C -0.06 -2.23 9.05 22.76 0.21 -2.03 16 10 C -0.06 -2.18 5.46 -20.08 -0.11 -2.29 16 11 C -0.03 -1.42 4.70 -20.09 -0.09 -1.51 16 12 C -0.21 -8.72 7.90 22.66 0.18 -8.54 16 13 C -0.11 -4.91 10.01 22.18 0.22 -4.69 16 14 C -0.18 -9.73 8.69 22.76 0.20 -9.53 16 15 C 0.08 4.45 5.57 -21.32 -0.12 4.33 16 16 C -0.51 -28.50 9.05 23.47 0.21 -28.29 16 17 H 0.07 3.79 7.91 -2.91 -0.02 3.76 16 18 C 0.04 2.04 5.14 85.25 0.44 2.48 16 19 N -0.82 -43.55 10.96 21.82 0.24 -43.31 16 20 Si 0.98 39.40 29.60 68.60 2.03 41.43 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 C -0.23 -11.64 9.24 22.95 0.21 -11.42 16 25 H 0.09 1.98 7.47 -2.39 -0.02 1.96 16 26 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.05 1.71 6.43 -2.38 -0.02 1.69 16 28 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.17 2.47 7.60 -2.91 -0.02 2.44 16 30 H 0.43 3.49 9.11 -74.06 -0.67 2.82 16 31 H 0.11 4.49 7.63 -2.91 -0.02 4.47 16 32 H 0.12 4.32 6.81 -2.91 -0.02 4.30 16 33 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 35 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 36 H 0.08 4.31 8.04 -2.91 -0.02 4.29 16 Total: -1.00 -69.03 313.86 5.07 -63.95 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.45 Total: 24.38 kcal Atomic # 6 Polarization: -60.29 SS G_CDS: 2.73 Total: -57.56 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.24 Total: -43.31 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.37 Total: -28.88 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -69.03 5.07 -63.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241000994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.145 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds