Wall clock time and date at job start Tue Mar 31 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38094 * 119.92348 * 2 1 4 4 C 1.38065 * 120.30659 * 180.27520 * 3 2 1 5 5 C 1.39761 * 120.13829 * 359.72449 * 4 3 2 6 6 C 1.47757 * 120.07709 * 180.02562 * 5 4 3 7 7 O 1.21473 * 119.99708 * 179.97438 * 6 5 4 8 8 O 1.34701 * 119.99683 * 359.97438 * 6 5 4 9 9 C 1.39336 * 119.84418 * 359.97438 * 5 4 3 10 10 C 1.39363 * 119.70124 * 359.97438 * 9 5 4 11 11 C 1.48000 * 120.07502 * 180.02562 * 10 9 5 12 12 C 1.39929 * 119.88346 * 310.00854 * 11 10 9 13 13 C 1.36253 * 120.12418 * 179.97438 * 12 11 10 14 14 C 1.40928 * 119.87918 * 0.24339 * 13 12 11 15 15 C 1.41029 * 120.12448 * 179.75034 * 14 13 12 16 16 H 1.07996 * 120.00287 * 150.11672 * 15 14 13 17 17 C 1.40022 * 119.99456 * 330.11344 * 15 14 13 18 18 N 1.30794 * 119.99504 * 161.72960 * 17 15 14 19 19 Si 1.86798 * 120.00073 * 341.73353 * 17 15 14 20 20 H 1.48491 * 109.47348 * 95.41548 * 19 17 15 21 21 H 1.48498 * 109.46694 * 215.41681 * 19 17 15 22 22 H 1.48503 * 109.46910 * 335.41044 * 19 17 15 23 23 C 1.40932 * 119.75989 * 359.49924 * 14 13 12 24 24 C 1.36261 * 119.87505 * 0.50849 * 23 14 13 25 25 H 1.09004 * 109.46825 * 270.28289 * 1 2 3 26 26 H 1.09002 * 109.47051 * 30.27710 * 1 2 3 27 27 H 1.08996 * 109.47152 * 150.28212 * 1 2 3 28 28 H 1.08008 * 119.84428 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.93054 * 179.69531 * 4 3 2 30 30 H 0.96706 * 116.99365 * 179.97438 * 8 6 5 31 31 H 1.08005 * 120.15140 * 179.97438 * 9 5 4 32 32 H 1.08000 * 119.93324 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.06339 * 179.97438 * 13 12 11 34 34 H 0.97005 * 119.99310 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.06628 * 180.22132 * 23 14 13 36 36 H 1.07999 * 119.93582 * 179.76713 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1969 0.0000 4 6 3.5765 1.2061 -0.0057 5 6 4.2863 0.0021 -0.0058 6 6 5.7638 0.0136 -0.0113 7 8 6.3793 -1.0337 -0.0109 8 8 6.4282 1.1854 -0.0169 9 6 3.5974 -1.2090 0.0006 10 6 2.2038 -1.2106 0.0074 11 6 1.4636 -2.4922 0.0147 12 6 1.7858 -3.4887 -0.9133 13 6 1.1079 -4.6706 -0.9107 14 6 0.0771 -4.8866 0.0257 15 6 -0.6314 -6.1060 0.0297 16 1 -1.0428 -6.4885 0.9520 17 6 -0.8015 -6.8206 -1.1624 18 7 -1.1271 -8.0869 -1.1249 19 14 -0.5633 -5.9656 -2.8060 20 1 0.8214 -6.1986 -3.2891 21 1 -1.5301 -6.5113 -3.7924 22 1 -0.7922 -4.5074 -2.6432 23 6 -0.2396 -3.8817 0.9617 24 6 0.4446 -2.7034 0.9501 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8925 -0.5094 28 1 1.6521 2.1300 -0.0004 29 1 4.1091 2.1456 -0.0107 30 1 7.3943 1.1422 -0.0200 31 1 4.1409 -2.1423 0.0001 32 1 2.5733 -3.3205 -1.6330 33 1 1.3572 -5.4389 -1.6276 34 1 -1.2445 -8.5820 -1.9507 35 1 -1.0263 -4.0434 1.6838 36 1 0.2001 -1.9312 1.6644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241001449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:44 Heat of formation + Delta-G solvation = -62.040598 kcal Electronic energy + Delta-G solvation = -20679.461421 eV Core-core repulsion = 17478.287004 eV Total energy + Delta-G solvation = -3201.174418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37279 -39.10240 -37.50088 -36.11181 -34.00437 -32.84635 -31.79797 -29.96140 -29.32019 -27.60537 -25.26681 -23.32224 -22.27641 -21.70700 -20.53386 -20.08610 -17.98284 -17.58722 -17.30618 -15.73023 -15.61713 -15.18706 -15.06677 -14.68715 -14.04012 -13.92707 -13.77490 -13.28695 -13.23162 -12.78444 -12.50780 -12.30277 -12.05788 -11.90681 -11.86985 -11.52397 -11.36068 -10.98010 -10.92320 -10.75427 -10.58932 -10.31058 -9.94999 -9.66435 -9.31585 -8.77595 -8.58522 -7.89485 -7.43741 -7.11449 -4.59976 0.81354 1.45488 2.38635 2.66959 2.70283 3.00101 3.04894 3.15238 3.23835 3.87549 3.92579 4.39118 4.90254 5.01062 5.08752 5.25712 5.31583 5.43991 5.56686 5.77136 5.83960 5.96771 5.98812 6.01486 6.19172 6.29713 6.37307 6.44679 6.46123 6.54187 6.68708 6.75890 6.88380 7.03347 7.03932 7.34834 7.53335 7.68125 7.76914 7.86862 7.99286 8.20405 8.52791 8.64903 9.89528 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.004341 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.632920 B = 6448.710568 C = 7009.872667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.134 4.134 4 C -0.083 4.083 5 C -0.137 4.137 6 C 0.527 3.473 7 O -0.516 6.516 8 O -0.515 6.515 9 C -0.056 4.056 10 C -0.002 4.002 11 C -0.208 4.208 12 C -0.049 4.049 13 C -0.242 4.242 14 C 0.099 3.901 15 C -0.435 4.435 16 H 0.093 0.907 17 C 0.083 3.917 18 N -0.797 5.797 19 Si 0.914 3.086 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.242 1.242 23 C -0.214 4.214 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.410 0.590 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.288 0.712 35 H 0.102 0.898 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 15.845 -0.127 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.054 4.054 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.138 4.138 6 C 0.373 3.627 7 O -0.406 6.406 8 O -0.327 6.327 9 C -0.074 4.074 10 C -0.002 4.002 11 C -0.209 4.209 12 C -0.067 4.067 13 C -0.261 4.261 14 C 0.096 3.904 15 C -0.462 4.462 16 H 0.111 0.889 17 C -0.138 4.138 18 N -0.419 5.419 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.165 1.165 23 C -0.233 4.233 24 C -0.071 4.071 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.268 0.732 31 H 0.153 0.847 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.552 15.282 -0.203 16.260 hybrid contribution 0.859 0.067 -0.738 1.134 sum 6.410 15.349 -0.941 16.660 Atomic orbital electron populations 1.20956 0.90830 1.03262 1.02455 1.20375 0.96572 0.92216 0.96210 1.20888 0.93701 0.97591 1.02973 1.21255 0.94144 0.96901 0.97851 1.18875 0.88217 0.95167 1.11520 1.21084 0.89130 0.80705 0.71821 1.90888 1.69802 1.33419 1.46493 1.84569 1.26681 1.35325 1.86131 1.21471 0.93660 0.96761 0.95551 1.18786 0.91501 0.93063 0.96833 1.17870 1.04543 0.93872 1.04601 1.20394 0.97265 0.92760 0.96265 1.20712 1.01575 0.98326 1.05510 1.17794 0.90044 0.91943 0.90608 1.19599 1.28697 1.01320 0.96605 0.88888 1.26278 0.91321 0.93970 1.02223 1.69683 1.32691 1.07934 1.31634 0.86254 0.78106 0.82181 0.79424 1.19454 1.21690 1.16536 1.20703 1.03667 0.94251 1.04712 1.20423 0.94088 0.96496 0.96142 0.90969 0.92126 0.89848 0.85705 0.85228 0.73201 0.84709 0.88755 0.88093 0.90117 0.88004 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.44 36.01 0.30 -1.27 16 2 C -0.05 -0.79 5.88 -104.14 -0.61 -1.40 16 3 C -0.13 -1.67 9.67 -39.70 -0.38 -2.06 16 4 C -0.08 -1.05 9.61 -39.08 -0.38 -1.43 16 5 C -0.14 -2.02 5.87 -105.03 -0.62 -2.64 16 6 C 0.53 7.43 8.27 34.62 0.29 7.72 16 7 O -0.52 -8.81 17.13 -19.25 -0.33 -9.14 16 8 O -0.52 -5.19 12.67 -40.49 -0.51 -5.71 16 9 C -0.06 -0.94 9.04 -38.75 -0.35 -1.29 16 10 C 0.00 -0.03 5.46 -104.94 -0.57 -0.60 16 11 C -0.21 -4.12 4.73 -104.63 -0.49 -4.61 16 12 C -0.05 -1.03 9.43 -39.66 -0.37 -1.41 16 13 C -0.24 -5.66 7.11 -39.28 -0.28 -5.94 16 14 C 0.10 2.41 5.10 -106.80 -0.55 1.87 16 15 C -0.43 -11.29 9.55 -37.86 -0.36 -11.65 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.09 5.40 -17.32 -0.09 2.00 16 18 N -0.80 -20.46 13.93 55.55 0.77 -19.69 16 19 Si 0.91 20.15 24.51 -169.99 -4.17 15.98 16 20 H -0.27 -5.80 6.70 56.52 0.38 -5.42 16 21 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.24 -5.45 6.87 56.52 0.39 -5.06 16 23 C -0.21 -4.71 9.73 -39.27 -0.38 -5.09 16 24 C -0.05 -1.05 7.83 -39.66 -0.31 -1.36 16 25 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.08 1.29 6.46 -51.93 -0.34 0.95 16 28 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.13 1.34 7.60 -52.49 -0.40 0.94 16 30 H 0.41 2.19 9.11 45.56 0.42 2.61 16 31 H 0.14 2.39 7.62 -52.48 -0.40 1.99 16 32 H 0.09 1.84 8.03 -52.49 -0.42 1.42 16 33 H 0.10 2.37 4.73 -52.49 -0.25 2.12 16 34 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 35 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.10 1.66 6.85 -52.49 -0.36 1.30 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -28.58 308.48 -7.75 -36.32 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.00 Total: 6.74 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -5.16 Total: -29.17 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.77 Total: -19.69 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.84 Total: -14.84 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.17 Total: 15.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.58 -7.75 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241001449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.720 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds