Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38094 * 119.92348 * 2 1 4 4 C 1.38065 * 120.30659 * 180.27520 * 3 2 1 5 5 C 1.39761 * 120.13829 * 359.72449 * 4 3 2 6 6 C 1.47757 * 120.07709 * 180.02562 * 5 4 3 7 7 O 1.21473 * 119.99708 * 179.97438 * 6 5 4 8 8 O 1.34701 * 119.99683 * 359.97438 * 6 5 4 9 9 C 1.39336 * 119.84418 * 359.97438 * 5 4 3 10 10 C 1.39363 * 119.70124 * 359.97438 * 9 5 4 11 11 C 1.48000 * 120.07502 * 180.02562 * 10 9 5 12 12 C 1.39929 * 119.88346 * 310.00854 * 11 10 9 13 13 C 1.36253 * 120.12418 * 179.97438 * 12 11 10 14 14 C 1.40928 * 119.87918 * 0.24339 * 13 12 11 15 15 C 1.41029 * 120.12448 * 179.75034 * 14 13 12 16 16 H 1.07996 * 120.00287 * 150.11672 * 15 14 13 17 17 C 1.40022 * 119.99456 * 330.11344 * 15 14 13 18 18 N 1.30794 * 119.99504 * 161.72960 * 17 15 14 19 19 Si 1.86798 * 120.00073 * 341.73353 * 17 15 14 20 20 H 1.48491 * 109.47348 * 95.41548 * 19 17 15 21 21 H 1.48498 * 109.46694 * 215.41681 * 19 17 15 22 22 H 1.48503 * 109.46910 * 335.41044 * 19 17 15 23 23 C 1.40932 * 119.75989 * 359.49924 * 14 13 12 24 24 C 1.36261 * 119.87505 * 0.50849 * 23 14 13 25 25 H 1.09004 * 109.46825 * 270.28289 * 1 2 3 26 26 H 1.09002 * 109.47051 * 30.27710 * 1 2 3 27 27 H 1.08996 * 109.47152 * 150.28212 * 1 2 3 28 28 H 1.08008 * 119.84428 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.93054 * 179.69531 * 4 3 2 30 30 H 0.96706 * 116.99365 * 179.97438 * 8 6 5 31 31 H 1.08005 * 120.15140 * 179.97438 * 9 5 4 32 32 H 1.08000 * 119.93324 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.06339 * 179.97438 * 13 12 11 34 34 H 0.97005 * 119.99310 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.06628 * 180.22132 * 23 14 13 36 36 H 1.07999 * 119.93582 * 179.76713 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1969 0.0000 4 6 3.5765 1.2061 -0.0057 5 6 4.2863 0.0021 -0.0058 6 6 5.7638 0.0136 -0.0113 7 8 6.3793 -1.0337 -0.0109 8 8 6.4282 1.1854 -0.0169 9 6 3.5974 -1.2090 0.0006 10 6 2.2038 -1.2106 0.0074 11 6 1.4636 -2.4922 0.0147 12 6 1.7858 -3.4887 -0.9133 13 6 1.1079 -4.6706 -0.9107 14 6 0.0771 -4.8866 0.0257 15 6 -0.6314 -6.1060 0.0297 16 1 -1.0428 -6.4885 0.9520 17 6 -0.8015 -6.8206 -1.1624 18 7 -1.1271 -8.0869 -1.1249 19 14 -0.5633 -5.9656 -2.8060 20 1 0.8214 -6.1986 -3.2891 21 1 -1.5301 -6.5113 -3.7924 22 1 -0.7922 -4.5074 -2.6432 23 6 -0.2396 -3.8817 0.9617 24 6 0.4446 -2.7034 0.9501 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8925 -0.5094 28 1 1.6521 2.1300 -0.0004 29 1 4.1091 2.1456 -0.0107 30 1 7.3943 1.1422 -0.0200 31 1 4.1409 -2.1423 0.0001 32 1 2.5733 -3.3205 -1.6330 33 1 1.3572 -5.4389 -1.6276 34 1 -1.2445 -8.5820 -1.9507 35 1 -1.0263 -4.0434 1.6838 36 1 0.2001 -1.9312 1.6644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241001449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = -78.138628 kcal Electronic energy + Delta-G solvation = -20680.159484 eV Core-core repulsion = 17478.287004 eV Total energy + Delta-G solvation = -3201.872481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47240 -40.41250 -39.03063 -37.10322 -35.73378 -34.12707 -33.20769 -31.66948 -30.83461 -28.71026 -26.92040 -24.43478 -23.61528 -23.37135 -21.96918 -21.37939 -19.42743 -19.06440 -18.47440 -17.39843 -16.67447 -16.39306 -16.30883 -16.08130 -15.71191 -15.50576 -14.94688 -14.68779 -14.40718 -14.30570 -14.11254 -13.87599 -13.56126 -13.11041 -12.98731 -12.74511 -12.60086 -12.57425 -12.47086 -12.24780 -11.99577 -11.73287 -11.57406 -11.44422 -11.05813 -10.05747 -9.79574 -9.61579 -9.07351 -8.96975 -6.51354 -0.30913 0.19909 0.83086 0.91282 1.24678 1.37063 1.45877 1.55233 2.05266 2.08758 2.52110 2.83423 3.47614 3.81434 3.94804 3.99845 4.16389 4.23877 4.28054 4.32560 4.52112 4.67289 4.83231 4.84155 4.88774 4.95567 5.00359 5.06417 5.22933 5.27801 5.33611 5.39892 5.53743 5.55543 5.69117 5.73080 5.88179 5.99141 6.01996 6.19922 6.35267 6.68694 6.79251 6.96209 8.10660 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.004341 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.632920 B = 6448.710568 C = 7009.872667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.048 4.048 3 C -0.124 4.124 4 C -0.060 4.060 5 C -0.150 4.150 6 C 0.534 3.466 7 O -0.556 6.556 8 O -0.498 6.498 9 C -0.068 4.068 10 C -0.036 4.036 11 C -0.178 4.178 12 C -0.064 4.064 13 C -0.253 4.253 14 C 0.080 3.920 15 C -0.478 4.478 16 H 0.061 0.939 17 C 0.051 3.949 18 N -0.841 5.841 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.251 1.251 23 C -0.221 4.221 24 C -0.050 4.050 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.433 0.567 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.296 0.704 35 H 0.108 0.892 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 21.041 -0.433 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.078 4.078 5 C -0.151 4.151 6 C 0.381 3.619 7 O -0.449 6.449 8 O -0.312 6.312 9 C -0.087 4.087 10 C -0.036 4.036 11 C -0.179 4.179 12 C -0.082 4.082 13 C -0.272 4.272 14 C 0.078 3.922 15 C -0.507 4.507 16 H 0.079 0.921 17 C -0.165 4.165 18 N -0.467 5.467 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.174 1.174 23 C -0.240 4.240 24 C -0.068 4.068 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.184 0.816 29 H 0.181 0.819 30 H 0.295 0.705 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.690 20.507 -0.505 21.576 hybrid contribution 0.741 -1.081 -0.516 1.409 sum 7.432 19.426 -1.022 20.824 Atomic orbital electron populations 1.21006 0.89744 1.03485 1.03430 1.20598 0.97411 0.91973 0.94883 1.21307 0.93721 0.98172 1.00954 1.21676 0.94432 0.97126 0.94549 1.18994 0.88922 0.95263 1.11945 1.20976 0.89044 0.80981 0.70922 1.90886 1.70514 1.35029 1.48446 1.84495 1.28706 1.32892 1.85098 1.21321 0.93593 0.97133 0.96618 1.18666 0.91667 0.92765 1.00491 1.18280 1.02914 0.94481 1.02234 1.20655 0.97605 0.92656 0.97307 1.20774 1.01778 0.99160 1.05498 1.17927 0.90377 0.92068 0.91862 1.19530 1.31668 1.03333 0.96139 0.92052 1.26841 0.90969 0.94297 1.04415 1.69707 1.35445 1.08873 1.32640 0.85506 0.78492 0.80626 0.76653 1.18936 1.20082 1.17447 1.20920 1.04182 0.94621 1.04280 1.20719 0.93448 0.96235 0.96400 0.89567 0.89046 0.92540 0.81582 0.81929 0.70535 0.86879 0.87249 0.88773 0.89381 0.87386 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.44 71.24 0.60 -2.06 16 2 C -0.05 -1.22 5.88 -19.55 -0.11 -1.33 16 3 C -0.12 -2.34 9.67 22.19 0.21 -2.13 16 4 C -0.06 -1.18 9.61 22.60 0.22 -0.96 16 5 C -0.15 -3.95 5.87 -20.13 -0.12 -4.07 16 6 C 0.53 13.60 8.27 70.34 0.58 14.18 16 7 O -0.56 -18.35 17.13 19.92 0.34 -18.01 16 8 O -0.50 -7.92 12.67 -56.11 -0.71 -8.63 16 9 C -0.07 -2.18 9.04 22.81 0.21 -1.98 16 10 C -0.04 -1.15 5.46 -20.07 -0.11 -1.26 16 11 C -0.18 -6.85 4.73 -19.87 -0.09 -6.95 16 12 C -0.06 -2.73 9.43 22.22 0.21 -2.52 16 13 C -0.25 -12.15 7.11 22.47 0.16 -11.99 16 14 C 0.08 4.06 5.10 -21.28 -0.11 3.96 16 15 C -0.48 -26.58 9.55 23.39 0.22 -26.36 16 16 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 17 C 0.05 2.70 5.40 85.28 0.46 3.16 16 18 N -0.84 -45.81 13.93 21.84 0.30 -45.51 16 19 Si 0.96 42.92 24.51 68.60 1.68 44.61 16 20 H -0.26 -11.37 6.70 99.48 0.67 -10.70 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.25 -11.35 6.87 99.48 0.68 -10.66 16 23 C -0.22 -9.85 9.73 22.47 0.22 -9.63 16 24 C -0.05 -1.91 7.83 22.22 0.17 -1.74 16 25 H 0.09 1.69 7.49 -2.39 -0.02 1.67 16 26 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 27 H 0.06 1.58 6.46 -2.39 -0.02 1.57 16 28 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.16 2.20 7.60 -2.91 -0.02 2.18 16 30 H 0.43 2.89 9.11 -74.05 -0.67 2.22 16 31 H 0.11 4.04 7.62 -2.91 -0.02 4.02 16 32 H 0.11 4.26 8.03 -2.91 -0.02 4.23 16 33 H 0.09 4.57 4.73 -2.91 -0.01 4.56 16 34 H 0.30 14.43 8.30 -92.70 -0.77 13.66 16 35 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.13 4.07 6.85 -2.91 -0.02 4.05 16 Total: -1.00 -66.32 308.48 4.73 -61.60 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.39 Total: 17.62 kcal Atomic # 6 Polarization: -54.40 SS G_CDS: 2.72 Total: -51.67 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.30 Total: -45.51 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.37 Total: -26.64 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.68 Total: 44.61 kcal Total: -66.32 4.73 -61.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241001449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.542 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds