Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 119.99654 * 2 1 4 4 H 1.48494 * 109.47345 * 270.00001 * 3 2 1 5 5 H 1.48494 * 109.47206 * 30.00402 * 3 2 1 6 6 H 1.48505 * 109.47081 * 150.00109 * 3 2 1 7 7 C 1.38650 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99957 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.35658 * 117.00063 * 185.06372 * 9 7 2 11 11 C 1.38765 * 120.13460 * 354.39107 * 10 9 7 12 12 C 1.38105 * 120.04886 * 179.97438 * 11 10 9 13 13 C 1.38444 * 120.32402 * 0.02562 * 12 11 10 14 14 C 1.38015 * 120.27388 * 0.02562 * 13 12 11 15 15 C 1.39289 * 119.94272 * 359.97438 * 14 13 12 16 16 C 1.48280 * 120.15928 * 180.02562 * 15 14 13 17 17 C 1.39439 * 119.96013 * 129.97756 * 16 15 14 18 18 C 1.38102 * 119.64606 * 180.17082 * 17 16 15 19 19 C 1.37888 * 120.14057 * 359.93521 * 18 17 16 20 20 C 1.38996 * 120.98889 * 359.76636 * 19 18 17 21 21 C 1.39070 * 119.00830 * 0.15152 * 20 19 18 22 22 O 1.36163 * 111.22251 * 180.67864 * 20 19 18 23 23 C 1.43761 * 109.25729 * 341.06945 * 22 20 19 24 24 C 1.51689 * 132.01222 * 179.42870 * 19 18 17 25 25 H 0.96992 * 120.00298 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.97760 * 359.96050 * 11 10 9 27 27 H 1.08002 * 119.83682 * 179.72406 * 12 11 10 28 28 H 1.08007 * 119.86488 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.02941 * 179.97438 * 14 13 12 30 30 H 1.07995 * 120.18253 * 0.15364 * 17 16 15 31 31 H 1.07995 * 119.93068 * 179.90973 * 18 17 16 32 32 H 1.08003 * 119.93198 * 179.97438 * 21 20 19 33 33 H 1.09000 * 110.74271 * 269.42089 * 23 22 20 34 34 H 1.08992 * 110.74883 * 146.06883 * 23 22 20 35 35 H 1.09004 * 110.94014 * 313.96462 * 24 19 18 36 36 H 1.09002 * 110.93703 * 77.60400 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3683 -0.0016 10 6 2.0696 -3.5037 0.1046 11 6 3.4558 -3.4403 0.0910 12 6 4.2021 -4.5973 0.1998 13 6 3.5743 -5.8251 0.3223 14 6 2.1964 -5.9037 0.3363 15 6 1.4327 -4.7439 0.2273 16 6 -0.0479 -4.8228 0.2424 17 6 -0.7805 -3.9988 1.0960 18 6 -2.1591 -4.0802 1.1073 19 6 -2.8069 -4.9707 0.2775 20 6 -2.0930 -5.7953 -0.5842 21 6 -0.7047 -5.7146 -0.5991 22 8 -2.9277 -6.5812 -1.3188 23 6 -4.2134 -6.6360 -0.6780 24 6 -4.2768 -5.2884 0.0790 25 1 -0.4850 0.8399 0.0004 26 1 3.9514 -2.4855 -0.0049 27 1 5.2807 -4.5444 0.1843 28 1 4.1652 -6.7252 0.4065 29 1 1.7108 -6.8636 0.4316 30 1 -0.2726 -3.3009 1.7451 31 1 -2.7309 -3.4452 1.7677 32 1 -0.1351 -6.3486 -1.2624 33 1 -4.2622 -7.4729 0.0187 34 1 -5.0111 -6.7011 -1.4179 35 1 -4.7834 -5.4034 1.0373 36 1 -4.7624 -4.5232 -0.5266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241222342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -7.889080 kcal Electronic energy + Delta-G solvation = -21147.251336 eV Core-core repulsion = 17948.425104 eV Total energy + Delta-G solvation = -3198.826232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66690 -39.17482 -36.97873 -36.19338 -32.69413 -32.30411 -30.71927 -29.59998 -28.99602 -27.53846 -25.37975 -23.46773 -22.10609 -21.82193 -21.14535 -20.28605 -17.98700 -17.40079 -16.39148 -16.23113 -15.90311 -15.25917 -14.65325 -14.39821 -14.23810 -13.76112 -13.63046 -13.32721 -13.05527 -12.85494 -12.72789 -12.44146 -12.13616 -11.71873 -11.66204 -11.40759 -11.24833 -10.92901 -10.84279 -10.74941 -10.51616 -10.44043 -10.23487 -9.38344 -8.88562 -8.59309 -7.98679 -7.60347 -7.11332 -6.47797 -4.06305 1.53283 1.96952 2.28639 2.37666 3.11099 3.11871 3.16313 3.56306 3.93269 4.20142 4.57621 4.66772 4.84248 5.06129 5.07721 5.19511 5.25936 5.43185 5.51237 5.61489 5.66965 5.79994 5.85260 5.97693 6.02377 6.06576 6.08056 6.28023 6.51821 6.63881 6.69484 6.84934 6.94858 7.03020 7.04148 7.17483 7.26883 7.34064 7.41611 7.66731 7.77388 7.95699 8.96883 9.65638 10.68659 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.005955 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.779734 B = 4701.049556 C = 6331.329398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.163 6.163 10 C 0.166 3.834 11 C -0.234 4.234 12 C -0.068 4.068 13 C -0.216 4.216 14 C -0.058 4.058 15 C -0.137 4.137 16 C 0.023 3.977 17 C -0.101 4.101 18 C -0.068 4.068 19 C -0.188 4.188 20 C 0.091 3.909 21 C -0.133 4.133 22 O -0.311 6.311 23 C 0.053 3.947 24 C -0.106 4.106 25 H 0.270 0.730 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -9.248 1.704 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.065 6.065 10 C 0.111 3.889 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.235 4.235 14 C -0.076 4.076 15 C -0.138 4.138 16 C 0.023 3.977 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.189 4.189 20 C 0.047 3.953 21 C -0.152 4.152 22 O -0.225 6.225 23 C -0.022 4.022 24 C -0.143 4.143 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.106 -9.133 1.476 10.121 hybrid contribution 0.436 1.011 -0.005 1.101 sum -3.670 -8.122 1.471 9.033 Atomic orbital electron populations 1.70047 1.05838 1.27648 1.45249 1.25261 0.95822 0.98717 0.96443 0.85743 0.78976 0.80188 0.78733 1.19906 1.20266 1.19192 1.21344 0.91842 0.80837 1.53109 0.89077 1.83995 1.33990 1.11180 1.77318 1.19297 0.90035 0.87426 0.92107 1.21118 0.93488 0.99162 1.11542 1.20824 0.98541 0.92382 0.96932 1.20526 0.94129 0.97024 1.11793 1.20731 0.93451 0.95977 0.97445 1.17791 0.90820 0.91319 1.13894 1.18264 0.91932 0.93773 0.93746 1.21156 0.92873 0.98343 0.99521 1.20162 0.94149 0.96489 0.97766 1.20648 0.94478 1.01321 1.02425 1.19305 0.91309 0.92087 0.92596 1.20185 0.89663 1.02932 1.02433 1.86782 1.22086 1.67289 1.46385 1.23728 0.84497 0.97386 0.96619 1.21720 0.94106 0.97157 1.01352 0.92023 0.85334 0.87416 0.87430 0.86807 0.85048 0.86238 0.85989 0.91069 0.88228 0.89663 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.24 13.67 55.48 0.76 -23.48 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.40 -10.71 9.49 30.88 0.29 -10.42 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 9 O -0.16 -4.46 8.09 0.37 0.00 -4.45 16 10 C 0.17 3.96 6.55 -38.74 -0.25 3.71 16 11 C -0.23 -5.01 9.16 -39.44 -0.36 -5.37 16 12 C -0.07 -1.24 10.03 -39.55 -0.40 -1.64 16 13 C -0.22 -3.72 10.03 -39.59 -0.40 -4.12 16 14 C -0.06 -1.06 9.50 -39.27 -0.37 -1.43 16 15 C -0.14 -2.93 5.48 -104.73 -0.57 -3.50 16 16 C 0.02 0.48 5.27 -105.00 -0.55 -0.07 16 17 C -0.10 -2.12 8.79 -39.18 -0.34 -2.47 16 18 C -0.07 -1.26 10.02 -39.76 -0.40 -1.65 16 19 C -0.19 -3.25 6.27 -103.98 -0.65 -3.91 16 20 C 0.09 1.68 7.02 -38.99 -0.27 1.40 16 21 C -0.13 -2.58 9.52 -38.96 -0.37 -2.95 16 22 O -0.31 -5.15 11.10 -20.26 -0.22 -5.37 16 23 C 0.05 0.63 8.01 38.05 0.30 0.93 16 24 C -0.11 -1.36 7.12 -26.50 -0.19 -1.55 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.11 1.80 8.04 -52.49 -0.42 1.38 16 30 H 0.13 2.96 7.67 -52.49 -0.40 2.56 16 31 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.12 2.18 8.03 -52.48 -0.42 1.76 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -30.47 311.14 -8.34 -38.82 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.91 Total: 6.71 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -4.64 Total: -32.00 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.76 Total: -23.48 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.22 Total: -9.83 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.47 -8.34 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241222342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.927 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds