Wall clock time and date at job start Tue Mar 31 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00028 * 2 1 4 4 H 1.48504 * 109.46870 * 269.99916 * 3 2 1 5 5 H 1.48507 * 109.47154 * 29.99454 * 3 2 1 6 6 H 1.48491 * 109.47277 * 149.99618 * 3 2 1 7 7 C 1.37877 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99549 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00324 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.94154 * 270.25087 * 10 9 7 12 12 C 1.38307 * 120.23930 * 180.25312 * 11 10 9 13 13 C 1.38043 * 120.11982 * 359.75436 * 12 11 10 14 14 C 1.39306 * 119.87961 * 359.97438 * 13 12 11 15 15 C 1.48408 * 120.12083 * 179.97438 * 14 13 12 16 16 C 1.39462 * 120.04741 * 179.74888 * 15 14 13 17 17 C 1.38129 * 120.18038 * 179.71954 * 16 15 14 18 18 C 1.38050 * 120.27890 * 0.56449 * 17 16 15 19 19 C 1.39667 * 120.08762 * 359.71372 * 18 17 16 20 20 C 1.47747 * 120.08823 * 180.02562 * 19 18 17 21 21 O 1.21467 * 120.00132 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99916 * 359.97438 * 20 19 18 23 23 C 1.39043 * 120.04671 * 0.02971 * 15 14 13 24 24 C 1.37999 * 119.93491 * 89.99866 * 10 9 7 25 25 H 0.97002 * 120.00197 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47105 * 59.99671 * 9 7 2 27 27 H 1.08995 * 109.46853 * 299.99759 * 9 7 2 28 28 H 1.07993 * 119.88049 * 0.02562 * 11 10 9 29 29 H 1.07993 * 119.93765 * 179.72174 * 12 11 10 30 30 H 1.07995 * 120.05892 * 179.97438 * 13 12 11 31 31 H 1.08001 * 119.90912 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.86157 * 180.25266 * 17 16 15 33 33 H 1.07998 * 119.95414 * 179.69782 * 18 17 16 34 34 H 0.96700 * 116.99711 * 179.97438 * 22 20 19 35 35 H 1.08002 * 120.14046 * 0.02562 * 23 15 14 36 36 H 1.08002 * 120.06557 * 0.02722 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6148 0.0023 11 6 4.2387 -3.2667 1.2015 12 6 4.7047 -4.5689 1.2098 13 6 4.9432 -5.2268 0.0199 14 6 4.7132 -4.5770 -1.1906 15 6 4.9684 -5.2791 -2.4730 16 6 4.7326 -4.6289 -3.6840 17 6 4.9746 -5.2777 -4.8792 18 6 5.4402 -6.5773 -4.8838 19 6 5.6747 -7.2414 -3.6777 20 6 6.1735 -8.6321 -3.6826 21 8 6.3773 -9.2080 -2.6328 22 8 6.4021 -9.2615 -4.8515 23 6 5.4372 -6.5881 -2.4688 24 6 4.2439 -3.2648 -1.1931 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 4.0531 -2.7558 2.1347 29 1 4.8827 -5.0716 2.1489 30 1 5.3074 -6.2435 0.0276 31 1 4.3637 -3.6138 -3.6874 32 1 4.7942 -4.7679 -5.8140 33 1 5.6230 -7.0813 -5.8213 34 1 6.7284 -10.1706 -4.8041 35 1 5.6164 -7.0969 -1.5331 36 1 4.0647 -2.7562 -2.1288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241359845.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:52 Heat of formation + Delta-G solvation = -51.061989 kcal Electronic energy + Delta-G solvation = -20144.485345 eV Core-core repulsion = 16943.786995 eV Total energy + Delta-G solvation = -3200.698350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63550 -39.45443 -38.05264 -36.32830 -33.76810 -32.56451 -31.74393 -31.08998 -29.00169 -27.56122 -24.99176 -23.55982 -22.90327 -21.89330 -20.62034 -19.91707 -18.12291 -17.67419 -16.82250 -16.51133 -15.84852 -15.64977 -15.32722 -14.90432 -14.29707 -13.97084 -13.94444 -13.59803 -13.25436 -13.16874 -12.90100 -12.33145 -12.14755 -11.91028 -11.79823 -11.63559 -11.44473 -11.18093 -10.82291 -10.74559 -10.40693 -10.16732 -9.98358 -9.56721 -9.39626 -9.21564 -8.63227 -8.11796 -7.74393 -6.11983 -4.11813 0.48397 0.90029 1.94362 2.00802 2.49010 2.75174 3.24583 3.33084 3.35272 3.66285 4.36895 4.41636 4.57017 4.66938 4.78870 4.97259 5.12150 5.18795 5.24249 5.36848 5.40385 5.62719 5.72163 5.80528 5.94798 6.00060 6.05747 6.17462 6.22728 6.36236 6.40487 6.55035 6.68459 6.84375 6.94010 6.95611 7.00725 7.48277 7.48935 7.63438 7.64878 8.44147 8.93163 9.47824 11.00844 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.003532 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.820694 B = 7925.918657 C = 8582.683942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.029 4.029 11 C -0.112 4.112 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.063 4.063 15 C -0.036 4.036 16 C -0.075 4.075 17 C -0.129 4.129 18 C -0.071 4.071 19 C -0.131 4.131 20 C 0.529 3.471 21 O -0.515 6.515 22 O -0.513 6.513 23 C -0.052 4.052 24 C -0.105 4.105 25 H 0.265 0.735 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.413 0.587 35 H 0.140 0.860 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.181 -13.351 -8.861 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.029 4.029 11 C -0.130 4.130 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.063 4.063 15 C -0.036 4.036 16 C -0.093 4.093 17 C -0.147 4.147 18 C -0.089 4.089 19 C -0.132 4.132 20 C 0.374 3.626 21 O -0.404 6.404 22 O -0.325 6.325 23 C -0.070 4.070 24 C -0.123 4.123 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.272 0.728 35 H 0.158 0.842 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.927 -12.985 -8.594 20.238 hybrid contribution 0.409 0.242 0.041 0.477 sum 13.335 -12.743 -8.553 20.332 Atomic orbital electron populations 1.69899 1.06268 1.27034 1.50476 1.25001 0.94736 0.99023 0.94442 0.86813 0.80413 0.83671 0.78665 1.20133 1.21220 1.18905 1.20923 0.88168 0.94707 1.51489 0.90784 1.18827 0.97542 0.88481 0.97488 1.20224 0.92666 0.98012 0.91956 1.21195 0.98877 0.94546 0.98358 1.20984 1.00339 0.95113 0.97398 1.20988 1.02549 0.99437 0.91897 1.18574 1.02284 0.94293 0.91143 1.18805 0.98636 0.92977 0.93165 1.21703 0.95522 1.00565 0.91473 1.21118 1.00393 0.94710 0.98459 1.21436 0.95701 0.94548 0.97199 1.18892 1.08164 0.91131 0.95013 1.20952 0.73804 0.86984 0.80873 1.90890 1.49114 1.67291 1.33153 1.84558 1.79167 1.33590 1.35163 1.21337 0.94831 0.93514 0.97304 1.21099 0.99336 0.93285 0.98561 0.92542 0.95262 0.95781 0.86095 0.86485 0.86559 0.84421 0.84854 0.84624 0.72849 0.84228 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.27 9.65 -34.44 -0.33 -14.60 16 8 H 0.07 2.26 7.98 -52.48 -0.42 1.84 16 9 C 0.01 0.32 4.17 -29.04 -0.12 0.20 16 10 C -0.03 -0.58 5.06 -104.67 -0.53 -1.11 16 11 C -0.11 -2.05 9.69 -39.52 -0.38 -2.43 16 12 C -0.12 -1.90 10.03 -39.63 -0.40 -2.30 16 13 C -0.13 -2.02 9.43 -39.26 -0.37 -2.39 16 14 C -0.06 -1.02 5.88 -104.89 -0.62 -1.64 16 15 C -0.04 -0.51 5.87 -104.95 -0.62 -1.12 16 16 C -0.07 -0.93 9.42 -39.17 -0.37 -1.30 16 17 C -0.13 -1.32 10.02 -39.69 -0.40 -1.72 16 18 C -0.07 -0.72 9.61 -39.12 -0.38 -1.10 16 19 C -0.13 -1.56 5.87 -105.02 -0.62 -2.18 16 20 C 0.53 6.06 8.27 34.62 0.29 6.34 16 21 O -0.51 -7.30 17.13 -19.24 -0.33 -7.62 16 22 O -0.51 -4.05 12.67 -40.52 -0.51 -4.56 16 23 C -0.05 -0.69 8.97 -38.83 -0.35 -1.03 16 24 C -0.10 -1.91 9.08 -39.25 -0.36 -2.27 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 27 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 28 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.53 6.20 -52.49 -0.33 1.21 16 31 H 0.14 1.64 6.19 -52.49 -0.32 1.31 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.14 1.09 7.60 -52.49 -0.40 0.69 16 34 H 0.41 1.37 9.11 45.56 0.42 1.78 16 35 H 0.14 1.82 5.79 -52.49 -0.30 1.52 16 36 H 0.12 2.09 6.20 -52.49 -0.33 1.76 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -32.82 314.68 -8.52 -41.33 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.88 Total: 3.01 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -5.64 Total: -26.78 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.84 Total: -12.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.82 -8.52 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241359845.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.730 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds