Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99694 * 2 1 4 4 H 1.48499 * 109.47050 * 270.00207 * 3 2 1 5 5 H 1.48504 * 109.46999 * 30.00293 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99998 * 3 2 1 7 7 C 1.37869 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99707 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00443 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47685 * 180.02562 * 9 7 2 11 11 C 1.38319 * 119.87797 * 89.99865 * 10 9 7 12 12 C 1.38027 * 120.11936 * 180.02562 * 11 10 9 13 13 C 1.39322 * 119.87990 * 359.97284 * 12 11 10 14 14 C 1.48402 * 120.12320 * 180.02562 * 13 12 11 15 15 C 1.39463 * 120.04572 * 359.97438 * 14 13 12 16 16 C 1.38129 * 120.17979 * 179.74357 * 15 14 13 17 17 C 1.38045 * 120.28100 * 0.26193 * 16 15 14 18 18 C 1.39665 * 120.09188 * 359.97438 * 17 16 15 19 19 C 1.47746 * 120.08859 * 179.97438 * 18 17 16 20 20 O 1.21470 * 119.99636 * 180.02562 * 19 18 17 21 21 O 1.34701 * 120.00249 * 0.02562 * 19 18 17 22 22 C 1.39058 * 120.05046 * 180.25730 * 14 13 12 23 23 C 1.39335 * 119.75828 * 0.28004 * 13 12 11 24 24 C 1.38019 * 119.87761 * 359.44745 * 23 13 12 25 25 H 0.97004 * 120.00580 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46827 * 59.99770 * 9 7 2 27 27 H 1.08997 * 109.46697 * 300.00425 * 9 7 2 28 28 H 1.07998 * 119.94352 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.06118 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.91192 * 0.02872 * 15 14 13 31 31 H 1.08002 * 119.85954 * 180.27744 * 16 15 14 32 32 H 1.08004 * 119.95200 * 179.97438 * 17 16 15 33 33 H 0.96702 * 117.00274 * 180.02562 * 21 19 18 34 34 H 1.07998 * 120.13481 * 359.97215 * 22 14 13 35 35 H 1.08001 * 120.05858 * 179.72635 * 23 13 12 36 36 H 1.07999 * 119.94189 * 180.25533 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0140 -2.6147 -0.0023 11 6 4.2432 -3.2635 -1.2021 12 6 4.7029 -4.5649 -1.2090 13 6 4.9366 -5.2249 -0.0044 14 6 5.4314 -6.6240 -0.0055 15 6 5.6632 -7.2817 -1.2133 16 6 6.1287 -8.5822 -1.2175 17 6 6.3627 -9.2417 -0.0276 18 6 6.1298 -8.5957 1.1886 19 6 6.3797 -9.3017 2.4621 20 8 6.1761 -8.7384 3.5189 21 8 6.8332 -10.5701 2.4514 22 6 5.6590 -7.2830 1.1976 23 6 4.6989 -4.5683 1.2013 24 6 4.2446 -3.2650 1.1965 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6799 -0.8911 28 1 4.0615 -2.7512 -2.1353 29 1 4.8820 -5.0705 -2.1464 30 1 5.4825 -6.7714 -2.1478 31 1 6.3107 -9.0851 -2.1558 32 1 6.7263 -10.2586 -0.0371 33 1 6.9814 -10.9906 3.3094 34 1 5.4768 -6.7786 2.1350 35 1 4.8742 -5.0767 2.1379 36 1 4.0640 -2.7537 2.1305 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241359862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = -50.958534 kcal Electronic energy + Delta-G solvation = -19963.487260 eV Core-core repulsion = 16762.793396 eV Total energy + Delta-G solvation = -3200.693863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66517 -39.47736 -38.09594 -36.34799 -33.93531 -32.39589 -31.70055 -30.41523 -30.25323 -27.18292 -25.07944 -23.71655 -22.53540 -21.77055 -20.84508 -20.07922 -18.26183 -17.83559 -16.81977 -16.39403 -15.87088 -15.66349 -15.32938 -14.85290 -14.20841 -14.09806 -13.92638 -13.68094 -13.30638 -13.08621 -12.95919 -12.41672 -12.24164 -11.89720 -11.83159 -11.66999 -11.55134 -11.21449 -10.87606 -10.67029 -10.31187 -10.22775 -10.01818 -9.53081 -9.29362 -9.24994 -8.62756 -8.46965 -7.57950 -6.11449 -4.11419 0.43132 0.87055 1.90434 1.97870 2.47156 2.72408 3.25581 3.33839 3.36110 3.61534 4.37623 4.40196 4.52654 4.60619 4.71054 4.92890 5.04755 5.17536 5.19852 5.32339 5.34665 5.61018 5.71089 5.77004 5.89577 6.02260 6.03964 6.11842 6.17628 6.31408 6.43654 6.46236 6.63997 6.86355 6.93847 6.95319 6.97560 7.47655 7.49691 7.61409 7.65095 8.44255 8.93352 9.48221 11.01365 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.003120 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.803333 B = 8973.468709 C = 9459.337908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.016 4.016 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.090 4.090 14 C -0.029 4.029 15 C -0.082 4.082 16 C -0.129 4.129 17 C -0.074 4.074 18 C -0.127 4.127 19 C 0.528 3.472 20 O -0.512 6.512 21 O -0.513 6.513 22 C -0.055 4.055 23 C -0.104 4.104 24 C -0.121 4.121 25 H 0.265 0.735 26 H 0.030 0.970 27 H 0.025 0.975 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.413 0.587 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.987 -18.549 -0.843 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.026 4.026 10 C -0.016 4.016 11 C -0.140 4.140 12 C -0.122 4.122 13 C -0.090 4.090 14 C -0.029 4.029 15 C -0.100 4.100 16 C -0.147 4.147 17 C -0.092 4.092 18 C -0.128 4.128 19 C 0.372 3.628 20 O -0.401 6.401 21 O -0.325 6.325 22 C -0.073 4.073 23 C -0.122 4.122 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.272 0.728 34 H 0.159 0.841 35 H 0.136 0.864 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.700 -18.088 -0.930 23.327 hybrid contribution 0.291 0.585 0.582 0.875 sum 14.991 -17.504 -0.348 23.049 Atomic orbital electron populations 1.69897 1.06271 1.27057 1.50458 1.24997 0.94745 0.99044 0.94416 0.86801 0.80404 0.83631 0.78659 1.20129 1.21204 1.18903 1.20903 0.88093 0.94735 1.51549 0.90778 1.18865 0.97574 0.88595 0.97553 1.20433 0.91065 0.97928 0.92192 1.21020 1.00188 0.94386 0.98430 1.21065 0.99680 0.94924 0.96487 1.18437 1.04627 0.91889 0.94056 1.18798 0.98215 0.93480 0.92419 1.21584 0.95906 0.94430 0.98080 1.21082 1.00555 0.94880 0.98150 1.21415 0.96704 0.99930 0.91182 1.18910 1.08234 0.95006 0.90629 1.20951 0.72939 0.79393 0.89510 1.90906 1.48750 1.67275 1.33210 1.84547 1.78608 1.28361 1.41026 1.21377 0.94664 0.92197 0.99020 1.21137 0.99375 0.94956 0.96708 1.21032 1.00036 0.94315 0.98496 0.92526 0.95226 0.95678 0.85916 0.86468 0.84846 0.85015 0.84653 0.72793 0.84134 0.86407 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.51 -14.40 9.65 -34.44 -0.33 -14.73 16 8 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 9 C 0.01 0.26 4.17 -29.04 -0.12 0.14 16 10 C -0.02 -0.33 5.07 -104.57 -0.53 -0.86 16 11 C -0.12 -2.21 9.68 -39.63 -0.38 -2.59 16 12 C -0.10 -1.60 9.43 -39.26 -0.37 -1.97 16 13 C -0.09 -1.38 5.88 -104.90 -0.62 -2.00 16 14 C -0.03 -0.38 5.87 -104.95 -0.62 -1.00 16 15 C -0.08 -0.88 9.42 -39.17 -0.37 -1.24 16 16 C -0.13 -1.14 10.02 -39.69 -0.40 -1.54 16 17 C -0.07 -0.69 9.61 -39.12 -0.38 -1.07 16 18 C -0.13 -1.45 5.87 -105.03 -0.62 -2.07 16 19 C 0.53 5.94 8.27 34.62 0.29 6.22 16 20 O -0.51 -7.29 17.13 -19.24 -0.33 -7.62 16 21 O -0.51 -3.92 12.67 -40.50 -0.51 -4.43 16 22 C -0.05 -0.70 8.97 -38.82 -0.35 -1.05 16 23 C -0.10 -1.69 9.43 -39.25 -0.37 -2.06 16 24 C -0.12 -2.25 9.68 -39.63 -0.38 -2.63 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 27 H 0.03 0.57 7.51 -51.93 -0.39 0.18 16 28 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.12 1.43 6.20 -52.48 -0.33 1.10 16 30 H 0.13 1.20 6.19 -52.49 -0.32 0.88 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.14 0.98 7.60 -52.48 -0.40 0.59 16 33 H 0.41 1.31 9.11 45.56 0.42 1.72 16 34 H 0.14 1.85 5.79 -52.49 -0.30 1.54 16 35 H 0.12 1.66 6.20 -52.49 -0.33 1.34 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -33.15 314.68 -8.52 -41.67 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -2.88 Total: 2.31 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -5.64 Total: -26.54 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.77 Total: -26.53 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.84 Total: -12.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.15 -8.52 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241359862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.290 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds