Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99694 * 2 1 4 4 H 1.48499 * 109.47050 * 270.00207 * 3 2 1 5 5 H 1.48504 * 109.46999 * 30.00293 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99998 * 3 2 1 7 7 C 1.37869 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99707 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00443 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47685 * 180.02562 * 9 7 2 11 11 C 1.38319 * 119.87797 * 89.99865 * 10 9 7 12 12 C 1.38027 * 120.11936 * 180.02562 * 11 10 9 13 13 C 1.39322 * 119.87990 * 359.97284 * 12 11 10 14 14 C 1.48402 * 120.12320 * 180.02562 * 13 12 11 15 15 C 1.39463 * 120.04572 * 359.97438 * 14 13 12 16 16 C 1.38129 * 120.17979 * 179.74357 * 15 14 13 17 17 C 1.38045 * 120.28100 * 0.26193 * 16 15 14 18 18 C 1.39665 * 120.09188 * 359.97438 * 17 16 15 19 19 C 1.47746 * 120.08859 * 179.97438 * 18 17 16 20 20 O 1.21470 * 119.99636 * 180.02562 * 19 18 17 21 21 O 1.34701 * 120.00249 * 0.02562 * 19 18 17 22 22 C 1.39058 * 120.05046 * 180.25730 * 14 13 12 23 23 C 1.39335 * 119.75828 * 0.28004 * 13 12 11 24 24 C 1.38019 * 119.87761 * 359.44745 * 23 13 12 25 25 H 0.97004 * 120.00580 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46827 * 59.99770 * 9 7 2 27 27 H 1.08997 * 109.46697 * 300.00425 * 9 7 2 28 28 H 1.07998 * 119.94352 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.06118 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.91192 * 0.02872 * 15 14 13 31 31 H 1.08002 * 119.85954 * 180.27744 * 16 15 14 32 32 H 1.08004 * 119.95200 * 179.97438 * 17 16 15 33 33 H 0.96702 * 117.00274 * 180.02562 * 21 19 18 34 34 H 1.07998 * 120.13481 * 359.97215 * 22 14 13 35 35 H 1.08001 * 120.05858 * 179.72635 * 23 13 12 36 36 H 1.07999 * 119.94189 * 180.25533 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0140 -2.6147 -0.0023 11 6 4.2432 -3.2635 -1.2021 12 6 4.7029 -4.5649 -1.2090 13 6 4.9366 -5.2249 -0.0044 14 6 5.4314 -6.6240 -0.0055 15 6 5.6632 -7.2817 -1.2133 16 6 6.1287 -8.5822 -1.2175 17 6 6.3627 -9.2417 -0.0276 18 6 6.1298 -8.5957 1.1886 19 6 6.3797 -9.3017 2.4621 20 8 6.1761 -8.7384 3.5189 21 8 6.8332 -10.5701 2.4514 22 6 5.6590 -7.2830 1.1976 23 6 4.6989 -4.5683 1.2013 24 6 4.2446 -3.2650 1.1965 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6799 -0.8911 28 1 4.0615 -2.7512 -2.1353 29 1 4.8820 -5.0705 -2.1464 30 1 5.4825 -6.7714 -2.1478 31 1 6.3107 -9.0851 -2.1558 32 1 6.7263 -10.2586 -0.0371 33 1 6.9814 -10.9906 3.3094 34 1 5.4768 -6.7786 2.1350 35 1 4.8742 -5.0767 2.1379 36 1 4.0640 -2.7537 2.1305 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241359862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -70.584828 kcal Electronic energy + Delta-G solvation = -19964.338320 eV Core-core repulsion = 16762.793396 eV Total energy + Delta-G solvation = -3201.544923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52011 -40.56010 -39.17564 -37.13052 -35.60011 -34.06982 -32.62915 -31.78003 -31.54970 -28.73068 -25.94867 -25.22835 -23.70094 -23.09374 -21.85786 -21.35629 -19.12231 -18.98473 -18.71197 -17.32627 -16.81321 -16.70576 -16.44922 -16.31048 -15.79562 -15.24440 -14.93462 -14.79609 -14.56561 -14.35301 -14.10933 -14.03677 -13.52409 -13.48099 -13.02054 -12.79104 -12.62707 -12.46250 -12.24347 -11.97223 -11.84504 -11.71991 -11.55236 -11.51752 -10.80108 -10.49560 -10.09352 -9.80273 -8.84580 -8.31187 -6.36876 -0.43156 -0.11528 0.56000 0.90964 1.35922 1.38139 1.49952 1.54303 2.00333 2.34404 2.67739 3.03062 3.12391 3.55960 3.77453 3.90793 4.03033 4.14181 4.19054 4.24717 4.32270 4.35757 4.60283 4.71977 4.79607 4.86764 5.00688 5.03254 5.14353 5.22809 5.26722 5.31916 5.37576 5.52738 5.54690 5.58442 5.72875 5.84432 5.96637 6.11496 6.26426 6.69569 6.92514 7.26801 8.85370 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.003120 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.803333 B = 8973.468709 C = 9459.337908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.521 4.521 8 H 0.027 0.973 9 C 0.018 3.982 10 C -0.057 4.057 11 C -0.131 4.131 12 C -0.100 4.100 13 C -0.078 4.078 14 C -0.055 4.055 15 C -0.077 4.077 16 C -0.120 4.120 17 C -0.058 4.058 18 C -0.144 4.144 19 C 0.533 3.467 20 O -0.553 6.553 21 O -0.499 6.499 22 C -0.068 4.068 23 C -0.113 4.113 24 C -0.135 4.135 25 H 0.268 0.732 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.128 0.872 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.434 0.566 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.563 -20.625 -2.523 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.559 4.559 8 H 0.045 0.955 9 C -0.019 4.019 10 C -0.057 4.057 11 C -0.149 4.149 12 C -0.117 4.117 13 C -0.078 4.078 14 C -0.055 4.055 15 C -0.095 4.095 16 C -0.138 4.138 17 C -0.076 4.076 18 C -0.145 4.145 19 C 0.379 3.621 20 O -0.445 6.445 21 O -0.313 6.313 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.153 4.153 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.145 0.855 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.181 0.819 33 H 0.296 0.704 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.305 -20.208 -2.608 26.732 hybrid contribution -0.468 0.893 1.096 1.489 sum 16.837 -19.315 -1.511 25.667 Atomic orbital electron populations 1.70059 1.08352 1.28330 1.52244 1.25999 0.95614 1.03455 0.93910 0.85631 0.79428 0.77986 0.79483 1.18689 1.20926 1.17002 1.21149 0.90793 0.92994 1.50934 0.95503 1.18690 0.94289 0.91197 0.97691 1.20296 0.94398 0.97086 0.93916 1.21165 1.00387 0.95662 0.97688 1.21396 0.98375 0.93826 0.98147 1.18769 1.02380 0.93096 0.93540 1.18718 1.00607 0.92491 0.93707 1.21883 0.94693 0.95219 0.97662 1.21512 0.98741 0.94006 0.99514 1.21796 0.94548 1.00850 0.90356 1.19039 1.08939 0.94715 0.91785 1.20969 0.72171 0.80060 0.88908 1.90896 1.50709 1.68399 1.34516 1.84488 1.77560 1.26559 1.42691 1.21339 0.95530 0.93190 0.98544 1.21327 0.99298 0.94186 0.98252 1.21074 1.00858 0.95450 0.97880 0.92312 0.95217 0.94789 0.85452 0.82617 0.82883 0.81160 0.81944 0.70405 0.85679 0.84970 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 13.96 21.44 0.30 -59.64 16 2 C 0.01 0.42 5.47 84.65 0.46 0.89 16 3 Si 0.95 43.96 27.47 68.60 1.88 45.85 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.52 -30.46 9.65 25.60 0.25 -30.22 16 8 H 0.03 1.76 7.98 -2.91 -0.02 1.74 16 9 C 0.02 0.88 4.17 29.10 0.12 1.01 16 10 C -0.06 -2.40 5.07 -19.83 -0.10 -2.50 16 11 C -0.13 -4.73 9.68 22.24 0.22 -4.52 16 12 C -0.10 -2.92 9.43 22.48 0.21 -2.71 16 13 C -0.08 -2.32 5.88 -20.04 -0.12 -2.44 16 14 C -0.06 -1.34 5.87 -20.08 -0.12 -1.46 16 15 C -0.08 -1.34 9.42 22.54 0.21 -1.13 16 16 C -0.12 -1.53 10.02 22.20 0.22 -1.30 16 17 C -0.06 -0.83 9.61 22.57 0.22 -0.62 16 18 C -0.14 -2.99 5.87 -20.13 -0.12 -3.11 16 19 C 0.53 11.18 8.27 70.34 0.58 11.76 16 20 O -0.55 -15.69 17.13 19.94 0.34 -15.35 16 21 O -0.50 -6.19 12.67 -56.11 -0.71 -6.90 16 22 C -0.07 -1.69 8.97 22.76 0.20 -1.48 16 23 C -0.11 -3.75 9.43 22.48 0.21 -3.54 16 24 C -0.13 -5.23 9.68 22.24 0.22 -5.02 16 25 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.03 1.39 7.14 -2.39 -0.02 1.37 16 27 H 0.03 1.54 7.51 -2.39 -0.02 1.52 16 28 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.16 3.23 6.20 -2.91 -0.02 3.22 16 30 H 0.15 2.01 6.19 -2.91 -0.02 1.99 16 31 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.16 1.49 7.60 -2.91 -0.02 1.46 16 33 H 0.43 1.58 9.11 -74.06 -0.67 0.91 16 34 H 0.13 3.40 5.79 -2.91 -0.02 3.38 16 35 H 0.13 3.89 6.20 -2.91 -0.02 3.87 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -76.11 314.68 4.88 -71.22 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.40 Total: 11.20 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 2.67 Total: -46.39 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.30 Total: -59.64 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.37 Total: -22.25 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Total: -76.11 4.88 -71.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241359862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.640 kcal (2) G-P(sol) polarization free energy of solvation -76.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds