Wall clock time and date at job start Tue Mar 31 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36273 * 119.94568 * 2 1 4 4 C 1.40909 * 119.88110 * 179.97438 * 3 2 1 5 5 C 1.41031 * 120.11892 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99872 * 24.66650 * 5 4 3 7 7 C 1.40013 * 119.99887 * 204.66690 * 5 4 3 8 8 N 1.30793 * 119.99896 * 17.93819 * 7 5 4 9 9 Si 1.86799 * 119.99769 * 197.93472 * 7 5 4 10 10 H 1.48505 * 109.47153 * 90.00280 * 9 7 5 11 11 H 1.48500 * 109.47155 * 209.99852 * 9 7 5 12 12 H 1.48495 * 109.47385 * 329.99992 * 9 7 5 13 13 C 1.40946 * 119.76372 * 0.02562 * 4 3 2 14 14 C 1.36240 * 119.87147 * 359.71705 * 13 4 3 15 15 C 1.39913 * 119.93646 * 179.97438 * 2 1 3 16 16 C 1.48012 * 119.87996 * 0.02562 * 15 2 1 17 17 C 1.39723 * 120.06963 * 310.00283 * 16 15 2 18 18 C 1.38043 * 120.15180 * 180.02562 * 17 16 15 19 19 C 1.38113 * 120.30934 * 0.02562 * 18 17 16 20 20 C 1.39723 * 120.13803 * 359.97438 * 19 18 17 21 21 C 1.47752 * 120.07702 * 180.02562 * 20 19 18 22 22 O 1.21469 * 119.99987 * 179.97438 * 21 20 19 23 23 O 1.34700 * 120.00140 * 359.97438 * 21 20 19 24 24 C 1.39319 * 120.07147 * 130.02193 * 16 15 2 25 25 H 1.08998 * 109.47481 * 270.02401 * 1 2 3 26 26 H 1.09008 * 109.46985 * 30.02120 * 1 2 3 27 27 H 1.08995 * 109.47526 * 150.02030 * 1 2 3 28 28 H 1.07999 * 120.05697 * 359.95756 * 3 2 1 29 29 H 0.97009 * 119.99770 * 180.02562 * 8 7 5 30 30 H 1.07998 * 120.06628 * 180.02562 * 13 4 3 31 31 H 1.08003 * 119.93872 * 180.27319 * 14 13 4 32 32 H 1.07995 * 119.92264 * 359.74870 * 17 16 15 33 33 H 1.08000 * 119.84478 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.93116 * 179.97438 * 19 18 17 35 35 H 0.96697 * 117.00303 * 179.97438 * 23 21 20 36 36 H 1.08007 * 120.14640 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1872 1.1808 0.0000 4 6 3.5963 1.1792 0.0005 5 6 4.3053 2.3983 0.0011 6 1 3.8419 3.2923 0.3915 7 6 5.6100 2.4496 -0.5044 8 7 6.0478 1.4939 -1.2827 9 14 6.7254 3.8829 -0.0674 10 1 7.4827 3.5617 1.1690 11 1 7.6767 4.1273 -1.1811 12 1 5.9035 5.0990 0.1575 13 6 4.2946 -0.0451 0.0005 14 6 3.6046 -1.2198 0.0058 15 6 2.2052 -1.2125 0.0005 16 6 1.4610 -2.4919 0.0005 17 6 0.4368 -2.7061 0.9264 18 6 -0.2580 -3.8989 0.9283 19 6 0.0537 -4.8885 0.0167 20 6 1.0756 -4.6877 -0.9147 21 6 1.4077 -5.7471 -1.8896 22 8 2.2960 -5.5708 -2.6991 23 8 0.7252 -6.9084 -1.8809 24 6 1.7806 -3.4854 -0.9224 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6472 2.1161 -0.0007 29 1 6.9518 1.5292 -1.6327 30 1 5.3746 -0.0520 0.0014 31 1 4.1386 -2.1586 0.0103 32 1 0.1911 -1.9384 1.6452 33 1 -1.0485 -4.0593 1.6465 34 1 -0.4935 -5.8196 0.0239 35 1 0.9781 -7.5712 -2.5379 36 1 2.5720 -3.3251 -1.6397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241360064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:56 Heat of formation + Delta-G solvation = -63.016923 kcal Electronic energy + Delta-G solvation = -20589.783244 eV Core-core repulsion = 17388.566489 eV Total energy + Delta-G solvation = -3201.216754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27405 -38.87943 -37.34662 -36.04103 -34.21931 -31.83702 -31.45742 -30.77069 -28.96244 -25.96038 -25.28634 -24.45912 -22.26402 -21.02810 -20.39109 -19.87046 -17.87105 -17.25804 -16.96009 -15.77433 -15.55616 -15.43020 -14.80436 -14.58284 -13.89889 -13.84459 -13.50544 -13.23088 -12.86852 -12.59384 -12.33173 -12.03700 -11.89413 -11.63538 -11.50628 -11.44424 -11.24303 -11.08184 -10.92988 -10.63835 -10.43751 -10.31930 -9.76140 -9.51897 -9.33132 -8.80091 -8.53076 -7.51957 -7.21403 -6.90718 -4.45969 0.91726 1.56317 2.55740 2.79168 2.99887 3.00904 3.03636 3.05412 3.15301 3.82469 4.07279 4.50301 5.00125 5.18198 5.20423 5.51700 5.55628 5.61229 5.76285 5.92266 5.94758 6.08578 6.25874 6.27488 6.33812 6.42003 6.52072 6.55500 6.62928 6.83410 6.87652 6.96091 7.11854 7.21252 7.26538 7.53211 7.80860 7.93408 7.94834 8.02380 8.16144 8.50957 8.74463 8.85416 10.02035 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.003986 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.587792 B = 7023.021667 C = 7870.055194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.035 4.035 3 C -0.227 4.227 4 C 0.121 3.879 5 C -0.452 4.452 6 H 0.081 0.919 7 C 0.075 3.925 8 N -0.780 5.780 9 Si 0.911 3.089 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.261 1.261 13 C -0.172 4.172 14 C -0.073 4.073 15 C -0.209 4.209 16 C 0.009 3.991 17 C -0.090 4.090 18 C -0.134 4.134 19 C -0.091 4.091 20 C -0.130 4.130 21 C 0.527 3.473 22 O -0.515 6.515 23 O -0.516 6.516 24 C -0.062 4.062 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.284 0.716 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.409 0.591 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -9.132 2.386 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.035 4.035 3 C -0.247 4.247 4 C 0.118 3.882 5 C -0.480 4.480 6 H 0.099 0.901 7 C -0.145 4.145 8 N -0.404 5.404 9 Si 0.735 3.265 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.185 1.185 13 C -0.191 4.191 14 C -0.091 4.091 15 C -0.210 4.210 16 C 0.009 3.991 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.131 4.131 21 C 0.372 3.628 22 O -0.404 6.404 23 O -0.327 6.327 24 C -0.080 4.080 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.267 0.733 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.963 -8.845 2.297 12.121 hybrid contribution 0.821 0.129 -0.420 0.931 sum -7.142 -8.716 1.877 11.424 Atomic orbital electron populations 1.20827 0.93813 1.01295 1.00662 1.19049 0.93465 0.92673 0.98303 1.20517 0.94186 0.95371 1.14604 1.17687 0.90937 0.93216 0.86369 1.19677 0.97545 0.96152 1.34618 0.90088 1.26006 0.98536 0.97437 0.92533 1.69819 1.17882 1.31674 1.20977 0.86263 0.79702 0.81381 0.79174 1.19088 1.20152 1.18451 1.20979 0.99756 0.91361 1.07048 1.20440 0.92365 0.97097 0.99226 1.17806 0.92478 0.89388 1.21365 1.18912 0.94005 0.93565 0.92619 1.21692 0.95037 0.96638 0.97410 1.21002 1.00762 0.93851 0.99561 1.21251 0.96076 0.99276 0.94347 1.18910 1.01832 0.93641 0.98730 1.21115 0.78309 0.81065 0.82359 1.90892 1.30648 1.80201 1.38680 1.84567 1.61695 1.26993 1.59481 1.21522 0.98150 0.90823 0.97500 0.92508 0.92784 0.92566 0.88757 0.90489 0.86379 0.89245 0.85499 0.85818 0.85375 0.73256 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 8.43 36.00 0.30 -1.56 16 2 C -0.03 -0.74 5.83 -104.71 -0.61 -1.35 16 3 C -0.23 -5.36 9.36 -39.28 -0.37 -5.73 16 4 C 0.12 3.11 5.57 -106.80 -0.60 2.51 16 5 C -0.45 -11.53 9.03 -37.86 -0.34 -11.87 16 6 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 7 C 0.07 1.81 5.13 -17.33 -0.09 1.72 16 8 N -0.78 -19.57 10.96 55.55 0.61 -18.96 16 9 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 13 C -0.17 -4.36 8.63 -39.28 -0.34 -4.70 16 14 C -0.07 -1.68 9.43 -39.66 -0.37 -2.05 16 15 C -0.21 -4.49 5.49 -104.62 -0.57 -5.07 16 16 C 0.01 0.17 4.71 -104.93 -0.49 -0.33 16 17 C -0.09 -1.37 7.87 -39.10 -0.31 -1.68 16 18 C -0.13 -1.72 10.02 -39.70 -0.40 -2.12 16 19 C -0.09 -1.21 9.61 -39.07 -0.38 -1.58 16 20 C -0.13 -2.03 5.87 -105.03 -0.62 -2.64 16 21 C 0.53 7.82 8.27 34.62 0.29 8.11 16 22 O -0.51 -9.23 17.13 -19.24 -0.33 -9.56 16 23 O -0.52 -5.51 12.67 -40.49 -0.51 -6.02 16 24 C -0.06 -1.11 9.05 -38.76 -0.35 -1.46 16 25 H 0.06 0.85 7.48 -51.93 -0.39 0.47 16 26 H 0.05 0.87 8.08 -51.92 -0.42 0.45 16 27 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16 28 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 30 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 31 H 0.09 1.92 8.03 -52.48 -0.42 1.50 16 32 H 0.13 1.83 6.83 -52.49 -0.36 1.47 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.40 7.60 -52.49 -0.40 1.00 16 35 H 0.41 2.43 9.11 45.56 0.42 2.85 16 36 H 0.13 2.59 7.63 -52.48 -0.40 2.19 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -28.86 313.65 -8.81 -37.66 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.02 Total: 9.03 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -5.24 Total: -29.80 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.84 Total: -15.58 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.86 -8.81 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241360064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.352 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds