Wall clock time and date at job start Tue Mar 31 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47372 * 239.99638 * 3 2 1 5 5 H 1.48505 * 109.47396 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47191 * 119.99950 * 3 2 1 7 7 C 1.39965 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99641 * 197.98568 * 7 2 1 9 9 C 1.40984 * 119.99867 * 17.98004 * 7 2 1 10 10 C 1.40991 * 120.09617 * 204.71617 * 9 7 2 11 11 C 1.36192 * 119.93373 * 179.71884 * 10 9 7 12 12 C 1.40014 * 120.13164 * 0.57872 * 11 10 9 13 13 C 1.47808 * 119.90223 * 179.71992 * 12 11 10 14 14 C 1.40169 * 119.93983 * 129.66561 * 13 12 11 15 15 C 1.36208 * 120.52128 * 180.02562 * 14 13 12 16 16 C 1.40030 * 120.08268 * 0.03714 * 15 14 13 17 17 N 1.35623 * 133.39658 * 179.97438 * 16 15 14 18 18 C 1.30193 * 109.70828 * 180.02562 * 17 16 15 19 19 N 1.35990 * 110.13242 * 359.97438 * 18 17 16 20 20 H 0.97002 * 126.36842 * 180.02562 * 19 18 17 21 21 C 1.38176 * 107.26231 * 0.02562 * 19 18 17 22 22 C 1.38450 * 134.00982 * 179.97438 * 21 19 18 23 23 C 1.40233 * 120.19750 * 359.43923 * 12 11 10 24 24 F 1.35096 * 119.96874 * 180.27308 * 23 12 11 25 25 C 1.36431 * 120.06059 * 0.25586 * 23 12 11 26 26 H 0.97006 * 120.00672 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.03746 * 0.04635 * 10 9 7 28 28 H 1.07997 * 119.93804 * 180.29119 * 11 10 9 29 29 H 1.08000 * 119.73636 * 0.02562 * 14 13 12 30 30 H 1.07996 * 119.95909 * 180.02562 * 15 14 13 31 31 H 1.07993 * 124.93600 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.21319 * 359.72008 * 22 21 19 33 33 H 1.08003 * 120.06413 * 179.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2121 -0.0005 8 1 3.0484 -1.2350 0.2883 9 6 1.3548 -2.4031 -0.3780 10 6 1.8271 -3.6469 0.0886 11 6 1.1901 -4.7949 -0.2734 12 6 0.0744 -4.7434 -1.1178 13 6 -0.6094 -5.9930 -1.5125 14 6 -1.9999 -6.1031 -1.3747 15 6 -2.6420 -7.2493 -1.7342 16 6 -1.9142 -8.3308 -2.2456 17 7 -2.2634 -9.5680 -2.6776 18 6 -1.2013 -10.2142 -3.0638 19 7 -0.0971 -9.4361 -2.9069 20 1 0.8162 -9.6837 -3.1206 21 6 -0.5179 -8.2274 -2.3862 22 6 0.1301 -7.0601 -2.0196 23 6 -0.3998 -3.5093 -1.5855 24 9 -1.4800 -3.4646 -2.3956 25 6 0.2284 -2.3539 -1.2228 26 1 -0.4851 0.8400 -0.0004 27 1 2.6899 -3.6889 0.7368 28 1 1.5489 -5.7474 0.0877 29 1 -2.5666 -5.2726 -0.9803 30 1 -3.7138 -7.3241 -1.6245 31 1 -1.1976 -11.2218 -3.4524 32 1 1.2022 -6.9786 -2.1217 33 1 -0.1365 -1.4034 -1.5833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241697531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:37 Heat of formation + Delta-G solvation = 34.003316 kcal Electronic energy + Delta-G solvation = -20346.872885 eV Core-core repulsion = 17058.695690 eV Total energy + Delta-G solvation = -3288.177195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.70452 -41.75627 -37.96673 -36.54492 -33.92606 -32.89263 -30.79668 -29.66539 -29.15225 -28.25322 -25.34702 -22.94217 -22.11059 -21.31824 -20.98322 -20.26561 -17.89432 -17.63524 -16.74246 -15.99537 -15.43161 -15.02264 -14.89650 -14.66619 -14.38239 -14.14428 -13.59852 -13.51022 -13.14825 -12.79291 -12.50280 -12.08409 -11.79511 -11.51302 -11.30557 -11.19616 -11.02616 -10.73840 -10.50203 -10.45807 -10.07640 -9.80310 -9.74439 -9.38208 -8.16839 -7.96936 -7.59735 -7.23510 -7.00851 -4.62084 1.23111 1.87834 2.47921 2.81267 2.93054 2.95087 2.98332 3.08124 3.17590 3.73573 4.19679 4.40841 4.46922 4.89616 5.36736 5.42233 5.46290 5.57858 5.66706 5.80013 5.82243 6.07863 6.16102 6.44142 6.57096 6.66662 6.76449 6.81964 6.86975 6.97503 7.14405 7.21218 7.42047 7.49566 7.56652 7.68507 7.77550 8.02681 8.06031 8.34067 8.57971 8.65381 9.88456 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.003767 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.695326 B = 7430.363418 C = 7844.455425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.086 0.914 9 C 0.135 3.865 10 C -0.236 4.236 11 C -0.040 4.040 12 C -0.241 4.241 13 C 0.038 3.962 14 C -0.116 4.116 15 C -0.066 4.066 16 C 0.022 3.978 17 N -0.496 5.496 18 C 0.239 3.761 19 N -0.607 5.607 20 H 0.420 0.580 21 C 0.055 3.945 22 C -0.131 4.131 23 C 0.136 3.864 24 F -0.161 7.161 25 C -0.210 4.210 26 H 0.288 0.712 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.210 0.790 32 H 0.120 0.880 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -10.205 -3.365 10.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.255 4.255 11 C -0.059 4.059 12 C -0.243 4.243 13 C 0.037 3.963 14 C -0.136 4.136 15 C -0.086 4.086 16 C -0.095 4.095 17 N -0.216 5.216 18 C -0.048 4.048 19 N -0.219 5.219 20 H 0.258 0.742 21 C -0.054 4.054 22 C -0.152 4.152 23 C 0.117 3.883 24 F -0.140 7.140 25 C -0.230 4.230 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.226 0.774 32 H 0.138 0.862 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.100 -10.303 -3.361 10.838 hybrid contribution 1.414 0.826 -0.220 1.653 sum 1.514 -9.477 -3.581 10.243 Atomic orbital electron populations 1.69801 1.07840 1.30266 1.31590 1.26072 0.94829 1.01926 0.91976 0.86250 0.80176 0.79494 0.80290 1.18484 1.20029 1.18667 1.19666 0.98480 0.91151 1.37789 0.89569 1.17433 0.89748 0.92388 0.87207 1.20700 1.04483 0.92628 1.07690 1.20172 0.93219 0.97074 0.95430 1.17891 1.03924 0.89313 1.13129 1.18523 0.92168 0.92158 0.93489 1.20914 0.94191 0.97333 1.01138 1.19872 0.99240 0.90806 0.98677 1.19007 0.90721 0.93558 1.06208 1.70292 1.28350 1.05170 1.17830 1.25138 0.80882 0.98118 1.00699 1.43096 1.10678 1.12640 1.55508 0.74240 1.18841 0.95370 0.88281 1.02863 1.20005 0.99372 0.90818 1.05003 1.17342 0.84873 0.94017 0.92051 1.91353 1.53611 1.97463 1.71525 1.20937 1.01631 0.96105 1.04339 0.90080 0.88143 0.88338 0.85464 0.85875 0.77407 0.86212 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.73 10.96 55.55 0.61 -18.12 16 2 C 0.07 1.70 5.13 -17.34 -0.09 1.61 16 3 Si 0.91 17.21 29.60 -169.99 -5.03 12.18 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.44 -10.82 9.03 -37.90 -0.34 -11.16 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.14 3.37 5.57 -106.81 -0.60 2.78 16 10 C -0.24 -5.32 9.73 -39.28 -0.38 -5.70 16 11 C -0.04 -0.85 9.42 -39.65 -0.37 -1.23 16 12 C -0.24 -5.26 5.49 -104.57 -0.57 -5.83 16 13 C 0.04 0.75 5.31 -104.83 -0.56 0.19 16 14 C -0.12 -2.15 8.77 -39.59 -0.35 -2.50 16 15 C -0.07 -1.15 10.03 -39.64 -0.40 -1.55 16 16 C 0.02 0.39 7.23 -84.58 -0.61 -0.22 16 17 N -0.50 -7.90 11.27 -11.95 -0.13 -8.03 16 18 C 0.24 2.74 12.97 -89.76 -1.16 1.58 16 19 N -0.61 -7.09 6.24 -11.77 -0.07 -7.16 16 20 H 0.42 3.28 8.96 -40.82 -0.37 2.91 16 21 C 0.06 0.89 7.29 -83.99 -0.61 0.28 16 22 C -0.13 -2.27 9.52 -39.08 -0.37 -2.64 16 23 C 0.14 3.25 7.09 -39.48 -0.28 2.97 16 24 F -0.16 -3.73 15.84 2.25 0.04 -3.69 16 25 C -0.21 -5.29 8.60 -39.23 -0.34 -5.63 16 26 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 27 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.10 1.81 8.03 -52.49 -0.42 1.39 16 29 H 0.13 2.35 7.75 -52.49 -0.41 1.95 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.90 8.03 -52.49 -0.42 1.48 16 33 H 0.13 3.38 6.16 -52.48 -0.32 3.06 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -28.80 295.72 -9.93 -38.73 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -2.76 Total: 8.70 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -7.04 Total: -27.05 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.40 Total: -33.32 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.80 -9.93 -38.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241697531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.729 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds