Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30802 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48494 * 109.47619 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46812 * 299.99829 * 3 2 1 6 6 H 1.48497 * 109.47062 * 59.99278 * 3 2 1 7 7 C 1.40049 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00391 * 160.07676 * 7 2 1 9 9 C 1.40754 * 119.99700 * 340.08491 * 7 2 1 10 10 C 1.41044 * 120.35121 * 323.30545 * 9 7 2 11 11 F 1.35106 * 120.09634 * 0.02562 * 10 9 7 12 12 C 1.37699 * 119.80655 * 180.02562 * 10 9 7 13 13 C 1.38851 * 120.53811 * 359.97438 * 12 10 9 14 14 C 1.38071 * 120.72343 * 0.04108 * 13 12 10 15 15 C 1.39147 * 120.17608 * 0.25688 * 14 13 12 16 16 C 1.47750 * 120.27714 * 179.72148 * 15 14 13 17 17 C 1.40183 * 119.94072 * 129.72000 * 16 15 14 18 18 C 1.36202 * 120.51597 * 179.69847 * 17 16 15 19 19 C 1.40027 * 120.08760 * 0.60080 * 18 17 16 20 20 N 1.35631 * 133.39015 * 179.67476 * 19 18 17 21 21 C 1.30193 * 109.70320 * 180.02562 * 20 19 18 22 22 N 1.35991 * 110.13161 * 0.02562 * 21 20 19 23 23 H 0.97000 * 126.36699 * 180.02562 * 22 21 20 24 24 C 1.38170 * 107.26528 * 359.97438 * 22 21 20 25 25 C 1.38447 * 134.00933 * 179.97438 * 24 22 21 26 26 H 0.97002 * 120.00192 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.72745 * 180.02562 * 12 10 9 28 28 H 1.07994 * 119.63781 * 180.02562 * 13 12 10 29 29 H 1.08006 * 119.90993 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.73670 * 0.02562 * 17 16 15 31 31 H 1.08009 * 119.95747 * 180.26302 * 18 17 16 32 32 H 1.08004 * 124.93328 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.21821 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7020 1.3465 0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8832 2.3965 1.2124 7 6 2.0084 -1.2128 0.0005 8 1 3.0398 -1.2409 -0.3181 9 6 1.3677 -2.3951 0.4163 10 6 0.4380 -2.3670 1.4765 11 9 0.1563 -1.2019 2.0999 12 6 -0.1818 -3.5305 1.8745 13 6 0.1004 -4.7328 1.2399 14 6 1.0070 -4.7858 0.1999 15 6 1.6553 -3.6292 -0.2225 16 6 2.6304 -3.6844 -1.3311 17 6 2.5248 -2.7851 -2.4012 18 6 3.4209 -2.8215 -3.4263 19 6 4.4511 -3.7699 -3.4247 20 7 5.4626 -4.0482 -4.2843 21 6 6.1664 -5.0432 -3.8265 22 7 5.6549 -5.4724 -2.6418 23 1 5.9962 -6.1991 -2.0975 24 6 4.5593 -4.6801 -2.3571 25 6 3.6495 -4.6354 -1.3145 26 1 -0.4850 0.8400 0.0004 27 1 -0.8938 -3.5074 2.6861 28 1 -0.3944 -5.6365 1.5636 29 1 1.2170 -5.7282 -0.2841 30 1 1.7297 -2.0542 -2.4102 31 1 3.3335 -2.1215 -4.2442 32 1 7.0310 -5.4663 -4.3164 33 1 3.7290 -5.3325 -0.4934 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241706599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = 42.946291 kcal Electronic energy + Delta-G solvation = -20978.418168 eV Core-core repulsion = 17690.628770 eV Total energy + Delta-G solvation = -3287.789399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.03819 -41.60096 -38.04760 -36.03664 -33.76569 -32.78364 -30.84606 -29.84456 -29.10797 -27.45444 -25.32736 -23.00695 -22.06454 -21.10440 -20.90976 -20.02289 -17.70552 -17.43767 -16.64720 -15.68264 -15.42754 -14.79913 -14.63418 -14.46116 -14.29666 -13.80947 -13.60880 -13.32082 -13.09145 -12.82001 -12.13520 -11.71698 -11.56952 -11.40853 -11.20229 -10.96991 -10.90647 -10.66336 -10.65970 -10.34223 -10.17199 -9.66837 -9.50549 -9.14157 -8.04046 -7.82150 -7.33283 -7.11966 -6.89924 -4.49690 1.38631 2.09725 2.56218 2.68717 3.07733 3.11155 3.14093 3.21581 3.27909 3.91082 4.42666 4.53214 4.62039 5.04313 5.29298 5.56631 5.63839 5.81601 5.93832 5.96845 5.99651 6.03722 6.21431 6.46282 6.49134 6.68803 6.84344 6.95966 7.03292 7.06382 7.28608 7.39467 7.41957 7.54030 7.64561 7.72339 7.79080 8.04636 8.21805 8.32756 8.63832 8.74463 10.06998 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.006527 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.821572 B = 4288.679153 C = 5602.352041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.454 4.454 8 H 0.089 0.911 9 C 0.107 3.893 10 C 0.041 3.959 11 F -0.143 7.143 12 C -0.131 4.131 13 C -0.216 4.216 14 C -0.080 4.080 15 C -0.157 4.157 16 C 0.046 3.954 17 C -0.090 4.090 18 C -0.078 4.078 19 C 0.025 3.975 20 N -0.497 5.497 21 C 0.234 3.766 22 N -0.607 5.607 23 H 0.418 0.582 24 C 0.051 3.949 25 C -0.137 4.137 26 H 0.285 0.715 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.207 0.793 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 -7.087 -2.675 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.481 4.481 8 H 0.107 0.893 9 C 0.103 3.897 10 C 0.021 3.979 11 F -0.121 7.121 12 C -0.151 4.151 13 C -0.236 4.236 14 C -0.098 4.098 15 C -0.159 4.159 16 C 0.044 3.956 17 C -0.110 4.110 18 C -0.098 4.098 19 C -0.092 4.092 20 N -0.217 5.217 21 C -0.053 4.053 22 N -0.220 5.220 23 H 0.255 0.745 24 C -0.058 4.058 25 C -0.158 4.158 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.224 0.776 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.422 -6.365 -3.464 9.683 hybrid contribution 0.317 0.099 1.158 1.205 sum 6.739 -6.266 -2.306 9.486 Atomic orbital electron populations 1.69745 1.07826 1.30101 1.31520 1.25833 0.94592 1.01281 0.92424 0.86302 0.81255 0.80990 0.78692 1.18164 1.19789 1.19576 1.19383 0.99299 0.90894 1.38558 0.89276 1.17454 0.90264 0.92458 0.89477 1.17760 1.03550 0.80485 0.96125 1.91339 1.92586 1.47402 1.80820 1.20657 1.00684 0.92660 1.01073 1.20056 1.05443 0.96123 1.01962 1.20627 0.96798 0.95964 0.96443 1.18350 1.04345 0.93751 0.99427 1.18472 0.92172 0.92042 0.92906 1.21025 0.99137 0.98746 0.92090 1.19910 0.93176 0.97322 0.99362 1.19030 0.97904 0.99449 0.92846 1.70283 1.06830 1.15072 1.29526 1.25083 1.00036 0.94779 0.85419 1.43067 1.25867 1.31466 1.21594 0.74452 1.18792 0.91962 0.95818 0.99203 1.19995 0.95541 1.02860 0.97391 0.90380 0.88101 0.88291 0.88499 0.84254 0.86084 0.77618 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.57 11.12 55.55 0.62 -18.95 16 2 C 0.08 1.97 4.51 -17.31 -0.08 1.89 16 3 Si 0.90 18.77 29.60 -169.99 -5.03 13.73 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.45 -11.39 6.64 -37.95 -0.25 -11.64 16 8 H 0.09 2.22 7.22 -52.49 -0.38 1.85 16 9 C 0.11 2.68 5.39 -106.48 -0.57 2.11 16 10 C 0.04 1.04 6.68 -38.72 -0.26 0.78 16 11 F -0.14 -3.75 14.27 2.25 0.03 -3.72 16 12 C -0.13 -2.93 9.99 -39.55 -0.40 -3.33 16 13 C -0.22 -4.44 10.02 -39.42 -0.40 -4.84 16 14 C -0.08 -1.65 9.48 -39.31 -0.37 -2.02 16 15 C -0.16 -3.54 5.51 -104.27 -0.57 -4.11 16 16 C 0.05 0.94 4.97 -104.85 -0.52 0.42 16 17 C -0.09 -1.83 8.12 -39.58 -0.32 -2.15 16 18 C -0.08 -1.48 10.03 -39.64 -0.40 -1.87 16 19 C 0.02 0.46 7.23 -84.58 -0.61 -0.15 16 20 N -0.50 -8.48 11.27 -11.95 -0.13 -8.61 16 21 C 0.23 2.92 12.97 -89.76 -1.16 1.76 16 22 N -0.61 -7.65 6.24 -11.77 -0.07 -7.72 16 23 H 0.42 3.60 8.96 -40.82 -0.37 3.24 16 24 C 0.05 0.87 7.29 -84.00 -0.61 0.26 16 25 C -0.14 -2.48 9.52 -39.07 -0.37 -2.85 16 26 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 27 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 28 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.10 1.75 8.03 -52.48 -0.42 1.33 16 30 H 0.14 2.99 7.28 -52.49 -0.38 2.61 16 31 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.21 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.12 1.91 8.03 -52.48 -0.42 1.49 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -29.56 292.24 -9.88 -39.44 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -2.80 Total: 7.18 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -6.90 Total: -25.75 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.41 Total: -35.28 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.03 Total: -3.72 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.56 -9.88 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241706599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.384 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds