Wall clock time and date at job start Tue Mar 31 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 119.99542 * 2 1 4 4 H 1.48504 * 109.47231 * 269.99676 * 3 2 1 5 5 H 1.48501 * 109.47582 * 30.00178 * 3 2 1 6 6 H 1.48509 * 109.47132 * 150.00117 * 3 2 1 7 7 C 1.38643 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99716 * 180.02562 * 7 2 1 9 9 O 1.34802 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.35680 * 117.00158 * 185.06326 * 9 7 2 11 11 C 1.38740 * 120.13472 * 354.39797 * 10 9 7 12 12 C 1.38115 * 120.05443 * 180.27838 * 11 10 9 13 13 C 1.38447 * 120.32655 * 359.72594 * 12 11 10 14 14 C 1.38011 * 120.27188 * 359.97438 * 13 12 11 15 15 C 1.39316 * 119.94246 * 359.97438 * 14 13 12 16 16 C 1.48233 * 120.16099 * 180.02562 * 15 14 13 17 17 C 1.39158 * 120.01308 * 64.97446 * 16 15 14 18 18 C 1.37996 * 120.20996 * 180.02562 * 17 16 15 19 19 C 1.38489 * 119.90835 * 0.15132 * 18 17 16 20 20 C 1.37816 * 120.24424 * 359.97438 * 19 18 17 21 21 C 1.38726 * 120.86642 * 359.71040 * 20 19 18 22 22 O 1.36067 * 111.31140 * 180.48344 * 21 20 19 23 23 C 1.43772 * 109.27959 * 341.38466 * 22 21 20 24 24 C 1.51673 * 132.10602 * 179.51219 * 20 19 18 25 25 H 0.96994 * 120.00416 * 359.97438 * 1 2 3 26 26 H 1.08011 * 119.97202 * 359.97438 * 11 10 9 27 27 H 1.08003 * 119.84105 * 179.74227 * 12 11 10 28 28 H 1.08002 * 119.86145 * 180.02562 * 13 12 11 29 29 H 1.07994 * 120.03051 * 180.02562 * 14 13 12 30 30 H 1.08002 * 119.89588 * 0.05853 * 17 16 15 31 31 H 1.07997 * 120.04413 * 180.12818 * 18 17 16 32 32 H 1.07993 * 119.88104 * 179.97438 * 19 18 17 33 33 H 1.08998 * 110.74822 * 145.85316 * 23 22 21 34 34 H 1.08996 * 110.75499 * 269.21298 * 23 22 21 35 35 H 1.08999 * 110.94425 * 313.99646 * 24 20 19 36 36 H 1.08993 * 110.94090 * 77.66287 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0698 -3.5036 0.1078 11 6 3.4557 -3.4403 0.0942 12 6 4.2021 -4.5978 0.1977 13 6 3.5744 -5.8256 0.3211 14 6 2.1967 -5.9037 0.3422 15 6 1.4328 -4.7431 0.2397 16 6 -0.0473 -4.8213 0.2625 17 6 -0.7036 -5.2613 1.4080 18 6 -2.0813 -5.3362 1.4335 19 6 -2.8132 -4.9753 0.3146 20 6 -2.1709 -4.5409 -0.8247 21 6 -0.7873 -4.4513 -0.8714 22 8 -0.3619 -3.9928 -2.0798 23 6 -1.4121 -4.1600 -3.0474 24 6 -2.6907 -4.0968 -2.1786 25 1 -0.4850 0.8400 0.0004 26 1 3.9513 -2.4854 -0.0022 27 1 5.2807 -4.5449 0.1826 28 1 4.1654 -6.7260 0.4019 29 1 1.7111 -6.8634 0.4390 30 1 -0.1329 -5.5446 2.2801 31 1 -2.5879 -5.6760 2.3246 32 1 -3.8914 -5.0344 0.3349 33 1 -1.3993 -3.3487 -3.7752 34 1 -1.3297 -5.1269 -3.5438 35 1 -3.4487 -4.7863 -2.5503 36 1 -3.0808 -3.0802 -2.1318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242009929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:32 Heat of formation + Delta-G solvation = -3.540992 kcal Electronic energy + Delta-G solvation = -21767.943826 eV Core-core repulsion = 18569.306142 eV Total energy + Delta-G solvation = -3198.637685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53952 -38.88292 -36.89300 -36.14561 -32.75039 -32.18788 -30.73084 -29.12699 -28.70282 -27.80124 -25.28080 -23.26928 -22.29783 -21.69737 -21.04059 -20.04774 -17.87876 -17.07342 -16.77112 -15.96526 -15.67321 -15.21498 -14.61589 -14.41989 -14.25709 -13.60338 -13.56534 -13.09926 -12.86366 -12.70492 -12.59631 -12.41938 -11.98947 -11.64949 -11.41306 -11.35920 -11.21595 -10.94518 -10.82449 -10.67667 -10.42473 -10.38543 -10.23157 -9.27106 -8.79306 -8.42508 -7.94233 -7.49558 -7.05316 -6.38542 -3.96217 1.71076 1.91842 2.29662 2.46556 3.15157 3.15872 3.20275 3.84791 4.00274 4.19805 4.61971 4.81818 4.99874 5.15068 5.22992 5.31005 5.34320 5.47018 5.61929 5.71728 5.75670 5.81572 5.91926 5.93251 6.08030 6.12816 6.15725 6.35567 6.53278 6.71819 6.76740 6.84415 6.97866 7.01789 7.13181 7.17411 7.31110 7.42426 7.46147 7.80844 7.87966 8.04704 9.06035 9.78646 10.78415 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.007841 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.101290 B = 3569.999128 C = 4807.846649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.090 0.910 9 O -0.159 6.159 10 C 0.171 3.829 11 C -0.237 4.237 12 C -0.071 4.071 13 C -0.218 4.218 14 C -0.060 4.060 15 C -0.131 4.131 16 C -0.029 4.029 17 C -0.078 4.078 18 C -0.156 4.156 19 C -0.079 4.079 20 C -0.182 4.182 21 C 0.142 3.858 22 O -0.282 6.282 23 C 0.050 3.950 24 C -0.105 4.105 25 H 0.268 0.732 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -9.161 -1.701 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.061 6.061 10 C 0.116 3.884 11 C -0.256 4.256 12 C -0.089 4.089 13 C -0.237 4.237 14 C -0.079 4.079 15 C -0.133 4.133 16 C -0.029 4.029 17 C -0.096 4.096 18 C -0.175 4.175 19 C -0.098 4.098 20 C -0.183 4.183 21 C 0.096 3.904 22 O -0.195 6.195 23 C -0.026 4.026 24 C -0.142 4.142 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.227 -8.817 -1.808 9.561 hybrid contribution 0.395 0.985 -0.065 1.063 sum -2.833 -7.832 -1.873 8.536 Atomic orbital electron populations 1.70071 1.05840 1.27344 1.45698 1.25240 0.95776 0.98632 0.96634 0.85776 0.78996 0.80375 0.78655 1.19955 1.20316 1.19221 1.21323 0.91736 0.81033 1.52704 0.89251 1.84007 1.33857 1.11068 1.77126 1.19325 0.89931 0.87551 0.91576 1.21103 0.93580 0.99056 1.11840 1.20785 0.98391 0.92408 0.97310 1.20478 0.94100 0.96910 1.12221 1.20669 0.93390 0.95799 0.98008 1.17721 0.90845 0.91290 1.13405 1.17800 0.91989 1.01612 0.91528 1.20892 0.94077 0.98570 0.96085 1.20780 0.93787 1.04813 0.98075 1.20137 0.99028 0.98919 0.91672 1.20651 0.93661 1.06801 0.97178 1.19507 0.91391 0.92430 0.87082 1.86981 1.39075 1.77079 1.16355 1.23758 0.85011 1.02020 0.91798 1.21734 0.98168 1.02600 0.91711 0.92235 0.85515 0.87575 0.87594 0.87066 0.85655 0.86076 0.86618 0.88132 0.91283 0.89889 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 8 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 9 O -0.16 -4.64 8.96 0.35 0.00 -4.63 16 10 C 0.17 4.35 6.62 -38.74 -0.26 4.09 16 11 C -0.24 -5.39 9.16 -39.44 -0.36 -5.75 16 12 C -0.07 -1.36 10.03 -39.55 -0.40 -1.75 16 13 C -0.22 -3.96 10.03 -39.59 -0.40 -4.36 16 14 C -0.06 -1.16 9.73 -39.26 -0.38 -1.54 16 15 C -0.13 -2.96 5.29 -104.73 -0.55 -3.52 16 16 C -0.03 -0.62 4.97 -104.65 -0.52 -1.14 16 17 C -0.08 -1.45 9.70 -39.33 -0.38 -1.83 16 18 C -0.16 -2.55 10.05 -39.58 -0.40 -2.95 16 19 C -0.08 -1.31 10.03 -39.64 -0.40 -1.71 16 20 C -0.18 -3.38 6.27 -104.12 -0.65 -4.03 16 21 C 0.14 3.09 6.46 -38.60 -0.25 2.84 16 22 O -0.28 -6.30 11.05 -19.95 -0.22 -6.52 16 23 C 0.05 0.79 8.01 38.06 0.30 1.10 16 24 C -0.11 -1.60 7.12 -26.51 -0.19 -1.79 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 27 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -33.20 313.06 -8.33 -41.53 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.93 Total: 5.82 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -4.63 Total: -32.16 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.66 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.22 Total: -11.16 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.20 -8.33 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242009929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.990 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds