Wall clock time and date at job start Tue Mar 31 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86796 * 119.99744 * 2 1 4 4 H 1.48504 * 109.47266 * 270.00167 * 3 2 1 5 5 H 1.48500 * 109.47234 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47016 * 150.00246 * 3 2 1 7 7 C 1.40014 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99363 * 197.98523 * 7 2 1 9 9 C 1.40932 * 120.00511 * 17.98204 * 7 2 1 10 10 C 1.41036 * 120.07846 * 24.77251 * 9 7 2 11 11 C 1.36136 * 119.95010 * 179.97438 * 10 9 7 12 12 C 1.40189 * 120.12071 * 0.02562 * 11 10 9 13 13 C 1.47236 * 119.91861 * 179.97438 * 12 11 10 14 14 C 1.31672 * 118.10762 * 75.00487 * 13 12 11 15 15 C 1.50099 * 123.77215 * 180.43829 * 14 13 12 16 16 C 1.53005 * 110.13402 * 342.80593 * 15 14 13 17 17 F 1.39906 * 109.62753 * 169.47158 * 16 15 14 18 18 F 1.39893 * 109.62940 * 290.05648 * 16 15 14 19 19 C 1.53357 * 108.51279 * 49.76825 * 16 15 14 20 20 C 1.50094 * 118.11401 * 254.73870 * 13 12 11 21 21 C 1.40396 * 120.15803 * 359.97438 * 12 11 10 22 22 F 1.35101 * 119.96926 * 179.97438 * 21 12 11 23 23 C 1.36386 * 120.05233 * 0.02562 * 21 12 11 24 24 H 0.96997 * 120.00204 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.02433 * 359.95832 * 10 9 7 26 26 H 1.08005 * 119.93932 * 179.72649 * 11 10 9 27 27 H 1.07999 * 118.11870 * 0.41578 * 14 13 12 28 28 H 1.09007 * 109.36034 * 103.01296 * 15 14 13 29 29 H 1.09004 * 109.36510 * 222.59618 * 15 14 13 30 30 H 1.08999 * 109.63122 * 51.63511 * 19 16 15 31 31 H 1.08997 * 109.63037 * 172.02905 * 19 16 15 32 32 H 1.08999 * 109.35827 * 283.03088 * 20 13 12 33 33 H 1.08994 * 109.36297 * 42.62878 * 20 13 12 34 34 H 1.08001 * 120.06104 * 180.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0465 -1.4001 5 1 1.4393 2.6527 0.7000 6 1 3.5395 1.4402 0.7000 7 6 2.0080 -1.2126 -0.0005 8 1 3.0485 -1.2355 0.2883 9 6 1.3551 -2.4032 -0.3778 10 6 0.2280 -2.3535 -1.2243 11 6 -0.4004 -3.5052 -1.5875 12 6 0.0704 -4.7407 -1.1213 13 6 -0.6130 -5.9835 -1.5165 14 6 -0.4281 -6.4307 -2.7411 15 6 -1.0686 -7.6767 -3.2800 16 6 -1.5846 -8.5434 -2.1296 17 9 -2.3840 -9.5727 -2.6386 18 9 -0.5028 -9.0866 -1.4285 19 6 -2.4167 -7.6614 -1.1906 20 6 -1.4754 -6.6710 -0.4984 21 6 1.1919 -4.7957 -0.2785 22 9 1.6420 -5.9883 0.1689 23 6 1.8266 -3.6460 0.0896 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1363 -1.4026 -1.5838 26 1 -1.2661 -3.4667 -2.2322 27 1 0.2214 -5.8685 -3.3956 28 1 -1.9012 -7.4036 -3.9284 29 1 -0.3346 -8.2402 -3.8560 30 1 -3.1660 -7.1184 -1.7666 31 1 -2.9093 -8.2842 -0.4440 32 1 -0.8422 -7.2041 0.2107 33 1 -2.0663 -5.9272 0.0360 34 1 2.6896 -3.6882 0.7376 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242233729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:47 Heat of formation + Delta-G solvation = -134.482404 kcal Electronic energy + Delta-G solvation = -21640.753717 eV Core-core repulsion = 17894.581246 eV Total energy + Delta-G solvation = -3746.172471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.83345 -47.76291 -46.84775 -38.21610 -36.78367 -33.85124 -31.33299 -30.91105 -29.26322 -28.40965 -25.21170 -23.44834 -22.27130 -21.09630 -20.73424 -18.15296 -17.76066 -17.36083 -16.36948 -16.01135 -15.50711 -15.16654 -14.99570 -14.70326 -14.42288 -13.99559 -13.78616 -13.37159 -13.15374 -12.96366 -12.78263 -12.50306 -12.46671 -12.34365 -12.12230 -11.98351 -11.61105 -11.31876 -11.18552 -11.03213 -10.55894 -10.45110 -10.25741 -10.04378 -9.59774 -9.30590 -8.42133 -7.69988 -7.34588 -7.01438 -4.59849 2.35421 2.64209 2.81943 2.95739 2.99404 3.03354 3.76139 3.83581 4.14741 4.34478 4.47399 4.51883 5.18208 5.24313 5.38572 5.43042 5.47181 5.58552 5.63943 5.69921 5.81714 6.00206 6.13844 6.22647 6.27760 6.71160 6.77985 6.80762 6.96718 6.99799 7.34657 7.44534 7.53188 7.81552 7.85159 8.03230 8.39798 8.62793 8.70924 9.92030 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040123 B = 0.003953 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.687806 B = 7081.541060 C = 7384.591068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.083 0.917 9 C 0.135 3.865 10 C -0.176 4.176 11 C -0.058 4.058 12 C -0.243 4.243 13 C -0.020 4.020 14 C -0.184 4.184 15 C -0.114 4.114 16 C 0.284 3.716 17 F -0.207 7.207 18 F -0.195 7.195 19 C -0.153 4.153 20 C -0.084 4.084 21 C 0.140 3.860 22 F -0.163 7.163 23 C -0.268 4.268 24 H 0.285 0.715 25 H 0.122 0.878 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -7.290 -3.923 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.477 4.477 8 H 0.102 0.898 9 C 0.132 3.868 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.245 4.245 13 C -0.020 4.020 14 C -0.202 4.202 15 C -0.152 4.152 16 C 0.248 3.752 17 F -0.188 7.188 18 F -0.176 7.176 19 C -0.191 4.191 20 C -0.121 4.121 21 C 0.121 3.879 22 F -0.142 7.142 23 C -0.289 4.289 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.550 -7.202 -3.875 9.359 hybrid contribution 0.443 0.430 0.160 0.637 sum -4.107 -6.772 -3.715 8.748 Atomic orbital electron populations 1.69805 1.07779 1.29900 1.32675 1.26017 0.94793 1.01731 0.91891 0.86214 0.80546 0.79918 0.79603 1.18973 1.20065 1.18354 1.19650 0.98475 0.91131 1.38441 0.89841 1.17436 0.90509 0.91258 0.87625 1.21026 0.99741 0.97187 1.01613 1.20305 0.97927 0.91198 0.98214 1.18051 1.01875 0.92642 1.11907 1.19490 0.95228 0.93873 0.93381 1.22120 1.03618 0.96968 0.97515 1.21281 1.02118 0.95516 0.96282 1.21140 0.80085 0.82539 0.91416 1.92979 1.74531 1.62949 1.88377 1.93009 1.56580 1.87515 1.80462 1.22621 0.98853 0.98278 0.99370 1.20480 0.96739 0.97203 0.97671 1.17270 0.94706 0.79542 0.96395 1.91349 1.88912 1.45862 1.88116 1.20619 1.06265 0.91811 1.10162 0.90348 0.85980 0.88494 0.86497 0.88525 0.89273 0.88749 0.89613 0.89809 0.89457 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.62 10.96 55.55 0.61 -18.01 16 2 C 0.08 1.77 5.13 -17.33 -0.09 1.68 16 3 Si 0.91 17.34 29.60 -169.99 -5.03 12.31 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.45 -11.18 9.02 -37.90 -0.34 -11.53 16 8 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 9 C 0.13 3.41 5.57 -106.80 -0.60 2.81 16 10 C -0.18 -4.27 8.62 -39.28 -0.34 -4.61 16 11 C -0.06 -1.26 9.70 -39.60 -0.38 -1.65 16 12 C -0.24 -5.20 5.06 -104.70 -0.53 -5.73 16 13 C -0.02 -0.35 4.81 -103.13 -0.50 -0.85 16 14 C -0.18 -2.96 9.43 -36.47 -0.34 -3.30 16 15 C -0.11 -1.50 5.61 -28.17 -0.16 -1.66 16 16 C 0.28 3.97 2.14 -26.54 -0.06 3.91 16 17 F -0.21 -2.87 17.08 2.25 0.04 -2.83 16 18 F -0.19 -3.18 16.30 2.25 0.04 -3.14 16 19 C -0.15 -1.96 5.61 -26.46 -0.15 -2.11 16 20 C -0.08 -1.32 5.43 -28.09 -0.15 -1.47 16 21 C 0.14 3.24 7.23 -39.44 -0.29 2.95 16 22 F -0.16 -3.68 16.81 2.25 0.04 -3.64 16 23 C -0.27 -6.53 9.70 -39.24 -0.38 -6.91 16 24 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 25 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 26 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 27 H 0.12 1.92 7.95 -52.49 -0.42 1.50 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 300.17 15.07 4.52 4.52 Total: -1.00 -25.83 300.17 -7.74 -33.58 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.66 Total: 5.66 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -4.30 Total: -28.44 kcal Atomic # 7 Polarization: -18.62 SS G_CDS: 0.61 Total: -18.01 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 0.11 Total: -9.61 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.83 -7.74 -33.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242233729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.905 kcal (2) G-P(sol) polarization free energy of solvation -25.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds