Wall clock time and date at job start Tue Mar 31 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48503 * 109.47083 * 239.99536 * 3 2 1 5 5 H 1.48494 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46942 * 119.99795 * 3 2 1 7 7 C 1.40078 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 162.30988 * 7 2 1 9 9 C 1.40700 * 119.99853 * 342.30106 * 7 2 1 10 10 C 1.40911 * 120.59555 * 335.31477 * 9 7 2 11 11 C 1.36234 * 119.98618 * 179.97438 * 10 9 7 12 12 C 1.39096 * 121.31101 * 359.97438 * 11 10 9 13 13 F 1.35091 * 119.38656 * 180.02562 * 12 11 10 14 14 C 1.38192 * 121.23119 * 0.02562 * 12 11 10 15 15 C 1.39448 * 119.89676 * 0.28214 * 14 12 11 16 16 C 1.47163 * 120.61905 * 179.70306 * 15 14 12 17 17 C 1.31698 * 118.11385 * 104.99937 * 16 15 14 18 18 C 1.50091 * 123.77244 * 180.44039 * 17 16 15 19 19 C 1.53005 * 110.13285 * 342.80368 * 18 17 16 20 20 F 1.39898 * 109.63200 * 169.47833 * 19 18 17 21 21 F 1.39901 * 109.63220 * 290.06363 * 19 18 17 22 22 C 1.53362 * 108.51293 * 49.77214 * 19 18 17 23 23 C 1.50087 * 118.11311 * 284.73228 * 16 15 14 24 24 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00456 * 359.97261 * 10 9 7 26 26 H 1.08002 * 119.34228 * 179.97438 * 11 10 9 27 27 H 1.07995 * 120.05234 * 180.02562 * 14 12 11 28 28 H 1.08007 * 118.11456 * 0.42008 * 17 16 15 29 29 H 1.08993 * 109.36113 * 103.01046 * 18 17 16 30 30 H 1.09009 * 109.36278 * 222.60354 * 18 17 16 31 31 H 1.08998 * 109.63007 * 51.62958 * 22 19 18 32 32 H 1.08999 * 109.63172 * 172.02009 * 22 19 18 33 33 H 1.08999 * 109.36476 * 283.03813 * 23 16 15 34 34 H 1.08999 * 109.35920 * 42.63099 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0956 1.6965 -1.2125 5 1 1.2768 2.7465 -0.0006 6 1 3.0955 1.6965 1.2126 7 6 2.0083 -1.2131 0.0005 8 1 3.0500 -1.2353 -0.2837 9 6 1.3547 -2.4026 0.3715 10 6 0.2231 -2.3675 1.2104 11 6 -0.4004 -3.5268 1.5614 12 6 0.0564 -4.7596 1.1071 13 9 -0.5919 -5.8849 1.4790 14 6 1.1611 -4.8547 0.2823 15 6 1.8420 -3.7005 -0.1034 16 6 3.0241 -3.7838 -0.9759 17 6 2.8900 -3.4320 -2.2379 18 6 4.0069 -3.4763 -3.2396 19 6 5.3553 -3.5609 -2.5216 20 9 6.3647 -3.8416 -3.4486 21 9 5.6242 -2.3461 -1.8819 22 6 5.2835 -4.6859 -1.4817 23 6 4.3147 -4.2590 -0.3748 24 1 -0.4851 0.8399 -0.0004 25 1 -0.1498 -1.4218 1.5751 26 1 -1.2667 -3.4879 2.2053 27 1 1.4991 -5.8217 -0.0596 28 1 1.9205 -3.0924 -2.5714 29 1 3.8832 -4.3494 -3.8803 30 1 3.9794 -2.5747 -3.8517 31 1 4.9245 -5.5997 -1.9551 32 1 6.2733 -4.8571 -1.0586 33 1 4.7597 -3.4533 0.2091 34 1 4.1177 -5.1094 0.2779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242234029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:51 Heat of formation + Delta-G solvation = -133.101155 kcal Electronic energy + Delta-G solvation = -22057.543174 eV Core-core repulsion = 18311.430599 eV Total energy + Delta-G solvation = -3746.112575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.69536 -47.45702 -46.70784 -38.14052 -36.36847 -33.75705 -31.31387 -30.77085 -29.47347 -27.90715 -25.04688 -23.35913 -22.35714 -21.05428 -20.51272 -17.98890 -17.45745 -17.21666 -16.38711 -16.11554 -15.52308 -15.08461 -14.72855 -14.24961 -14.20437 -13.89552 -13.77664 -13.48044 -12.99619 -12.83170 -12.78806 -12.42623 -12.30003 -12.11473 -11.99781 -11.95913 -11.50891 -11.26030 -11.08862 -10.86405 -10.77288 -10.39363 -10.09027 -10.01126 -9.48271 -9.28182 -8.18911 -7.63442 -7.35518 -6.97850 -4.48885 2.43438 2.67224 2.92999 2.97502 3.01034 3.09045 3.78912 3.97123 4.29249 4.38309 4.61171 4.65275 5.25439 5.37002 5.41727 5.53373 5.62476 5.81695 5.85807 5.89157 5.98196 6.02538 6.08814 6.20932 6.34518 6.53771 6.83815 6.97583 7.05344 7.11618 7.33377 7.59928 7.61270 7.79464 7.87568 8.04975 8.40568 8.62547 8.75153 9.92626 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.008189 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.207817 B = 3418.546416 C = 5367.292532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.432 4.432 8 H 0.087 0.913 9 C 0.125 3.875 10 C -0.154 4.154 11 C -0.117 4.117 12 C -0.061 4.061 13 F -0.177 7.177 14 C -0.093 4.093 15 C -0.180 4.180 16 C -0.020 4.020 17 C -0.170 4.170 18 C -0.115 4.115 19 C 0.284 3.716 20 F -0.209 7.209 21 F -0.193 7.193 22 C -0.153 4.153 23 C -0.081 4.081 24 H 0.286 0.714 25 H 0.126 0.874 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -3.313 -3.301 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.105 0.895 9 C 0.122 3.878 10 C -0.173 4.173 11 C -0.136 4.136 12 C -0.081 4.081 13 F -0.157 7.157 14 C -0.112 4.112 15 C -0.181 4.181 16 C -0.020 4.020 17 C -0.188 4.188 18 C -0.152 4.152 19 C 0.248 3.752 20 F -0.190 7.190 21 F -0.174 7.174 22 C -0.191 4.191 23 C -0.118 4.118 24 H 0.097 0.903 25 H 0.144 0.856 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.447 -3.151 -3.313 7.904 hybrid contribution 0.203 0.746 -0.019 0.773 sum 6.650 -2.405 -3.332 7.817 Atomic orbital electron populations 1.69780 1.07770 1.30050 1.32558 1.26036 0.94741 1.01734 0.91988 0.86328 0.80250 0.79677 0.80521 1.18551 1.20159 1.18484 1.19540 0.98444 0.90675 1.37318 0.89545 1.18636 0.90436 0.90564 0.88190 1.20854 0.99051 0.96501 1.00876 1.20366 1.00003 0.91965 1.01257 1.17035 0.99251 0.81483 1.10336 1.91271 1.81715 1.51228 1.91472 1.20456 0.95291 0.97090 0.98387 1.19418 0.99821 0.92536 1.06373 1.19253 0.93076 0.96792 0.92855 1.22049 0.98416 1.04697 0.93662 1.21295 0.90763 1.04564 0.98615 1.21148 0.85986 0.82563 0.85481 1.92968 1.64090 1.93793 1.68182 1.93019 1.94800 1.47053 1.82533 1.22620 1.02197 0.97436 0.96880 1.20465 0.92704 1.01918 0.96737 0.90283 0.85647 0.88540 0.88182 0.86308 0.88760 0.89270 0.88933 0.89794 0.89715 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.60 10.98 55.55 0.61 -17.99 16 2 C 0.08 1.76 5.15 -17.31 -0.09 1.67 16 3 Si 0.91 17.72 29.60 -169.99 -5.03 12.69 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.43 -10.48 8.39 -37.96 -0.32 -10.80 16 8 H 0.09 2.08 7.38 -52.49 -0.39 1.69 16 9 C 0.12 3.06 5.73 -104.61 -0.60 2.46 16 10 C -0.15 -3.77 8.65 -39.29 -0.34 -4.11 16 11 C -0.12 -2.72 9.88 -39.98 -0.40 -3.12 16 12 C -0.06 -1.42 7.28 -39.28 -0.29 -1.71 16 13 F -0.18 -4.00 17.24 2.25 0.04 -3.96 16 14 C -0.09 -2.05 9.76 -39.15 -0.38 -2.43 16 15 C -0.18 -3.99 5.23 -102.48 -0.54 -4.53 16 16 C -0.02 -0.37 4.24 -103.17 -0.44 -0.81 16 17 C -0.17 -3.05 9.20 -36.48 -0.34 -3.38 16 18 C -0.11 -1.68 5.61 -28.17 -0.16 -1.84 16 19 C 0.28 4.27 2.14 -26.54 -0.06 4.21 16 20 F -0.21 -3.10 17.08 2.25 0.04 -3.06 16 21 F -0.19 -3.39 16.30 2.25 0.04 -3.36 16 22 C -0.15 -2.04 5.61 -26.46 -0.15 -2.19 16 23 C -0.08 -1.29 5.43 -28.09 -0.15 -1.45 16 24 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 25 H 0.13 3.13 6.19 -52.49 -0.32 2.80 16 26 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 27 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.12 2.32 7.95 -52.48 -0.42 1.90 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.09 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.42 7.91 -51.93 -0.41 1.01 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 299.35 15.07 4.51 4.51 Total: -1.00 -25.67 299.35 -7.66 -33.33 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -3.63 Total: 5.85 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -4.24 Total: -28.02 kcal Atomic # 7 Polarization: -18.60 SS G_CDS: 0.61 Total: -17.99 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 0.11 Total: -10.37 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.67 -7.66 -33.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242234029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.769 kcal (2) G-P(sol) polarization free energy of solvation -25.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds