Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30769 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48502 * 109.46744 * 90.00259 * 3 2 1 5 5 H 1.48491 * 109.47215 * 210.00022 * 3 2 1 6 6 H 1.48498 * 109.47126 * 330.00261 * 3 2 1 7 7 C 1.40092 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99840 * 17.44126 * 7 2 1 9 9 C 1.40760 * 119.99957 * 197.43502 * 7 2 1 10 10 C 1.40833 * 120.60388 * 28.68888 * 9 7 2 11 11 C 1.37519 * 119.82306 * 180.02562 * 10 9 7 12 12 F 1.35102 * 119.42573 * 179.97438 * 11 10 9 13 13 C 1.39071 * 121.14770 * 359.97438 * 11 10 9 14 14 C 1.37804 * 121.27796 * 0.02562 * 13 11 10 15 15 C 1.39537 * 120.07189 * 359.70636 * 14 13 11 16 16 C 1.47115 * 120.55811 * 180.30578 * 15 14 13 17 17 C 1.31742 * 118.11769 * 105.26305 * 16 15 14 18 18 C 1.50101 * 123.76284 * 180.39755 * 17 16 15 19 19 C 1.53015 * 110.13227 * 342.82175 * 18 17 16 20 20 F 1.39896 * 109.62751 * 169.48914 * 19 18 17 21 21 F 1.39903 * 109.62850 * 290.06990 * 19 18 17 22 22 C 1.53355 * 108.51389 * 49.77657 * 19 18 17 23 23 C 1.50104 * 118.11225 * 284.99155 * 16 15 14 24 24 H 0.96995 * 120.00142 * 175.46753 * 1 2 3 25 25 H 1.08003 * 120.08928 * 359.97241 * 10 9 7 26 26 H 1.07998 * 119.36366 * 179.97438 * 13 11 10 27 27 H 1.08007 * 119.96354 * 179.97438 * 14 13 11 28 28 H 1.07999 * 118.11884 * 0.36847 * 17 16 15 29 29 H 1.08995 * 109.36439 * 103.02283 * 18 17 16 30 30 H 1.09001 * 109.35698 * 222.62166 * 18 17 16 31 31 H 1.09001 * 109.62544 * 51.62426 * 22 19 18 32 32 H 1.09003 * 109.62924 * 172.00348 * 22 19 18 33 33 H 1.09004 * 109.36003 * 283.05212 * 23 16 15 34 34 H 1.08994 * 109.35785 * 42.64689 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 2.4893 2.0462 1.4001 5 1 3.5392 1.4400 -0.7000 6 1 1.4393 2.6526 -0.7000 7 6 2.0081 -1.2133 0.0005 8 1 1.5052 -2.1272 -0.2794 9 6 3.3672 -1.2412 0.3658 10 6 3.8873 -0.2911 1.2659 11 6 5.2178 -0.3330 1.6113 12 9 5.7085 0.5827 2.4750 13 6 6.0670 -1.3015 1.0869 14 6 5.6072 -2.2532 0.2027 15 6 4.2651 -2.2626 -0.1791 16 6 3.7614 -3.2778 -1.1172 17 6 3.0288 -4.2604 -0.6341 18 6 2.4584 -5.3663 -1.4735 19 6 2.4770 -4.9691 -2.9511 20 9 2.1719 -6.0828 -3.7409 21 9 1.5385 -3.9566 -3.1774 22 6 3.8802 -4.4584 -3.3005 23 6 4.1066 -3.1311 -2.5706 24 1 -0.4850 -0.8374 -0.0664 25 1 3.2433 0.4688 1.6831 26 1 7.1071 -1.3073 1.3776 27 1 6.2855 -2.9954 -0.1919 28 1 2.8274 -4.2710 0.4269 29 1 3.0532 -6.2690 -1.3346 30 1 1.4314 -5.5614 -1.1647 31 1 4.6250 -5.1875 -2.9816 32 1 3.9563 -4.3042 -4.3769 33 1 3.4787 -2.3588 -3.0150 34 1 5.1532 -2.8422 -2.6660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242235116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = -135.762979 kcal Electronic energy + Delta-G solvation = -22151.027808 eV Core-core repulsion = 18404.799808 eV Total energy + Delta-G solvation = -3746.228000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.72913 -47.97117 -46.73921 -38.32449 -36.47699 -33.90293 -31.23543 -30.86394 -30.45555 -27.58614 -25.05390 -23.45299 -22.32379 -21.46374 -20.36856 -18.45378 -18.02889 -17.26958 -16.34057 -16.20367 -15.87568 -15.33733 -14.92744 -14.65191 -14.08378 -13.91028 -13.71689 -13.44996 -13.28872 -13.03394 -12.91665 -12.62890 -12.40754 -12.32012 -12.21363 -12.01982 -11.75968 -11.29180 -11.10189 -10.91355 -10.41241 -10.30887 -10.03777 -9.93965 -9.62319 -9.24257 -8.26129 -7.98910 -7.57728 -7.32957 -4.75449 2.17812 2.49070 2.73364 3.13381 3.25966 3.45571 3.88687 3.92393 4.22047 4.30193 4.55393 4.60378 5.04259 5.29148 5.31391 5.37988 5.49136 5.53439 5.73189 5.77614 5.86286 5.88440 6.00219 6.06426 6.30877 6.33489 6.45970 6.68124 6.90634 7.13774 7.27689 7.36281 7.40489 7.46359 7.57474 7.77314 8.22077 8.28779 8.54231 9.79366 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.006796 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.104926 B = 4119.000428 C = 5190.004074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.043 3.957 3 Si 1.069 2.931 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.286 1.286 7 C -0.483 4.483 8 H 0.090 0.910 9 C 0.130 3.870 10 C -0.294 4.294 11 C 0.145 3.855 12 F -0.164 7.164 13 C -0.293 4.293 14 C -0.036 4.036 15 C -0.192 4.192 16 C -0.013 4.013 17 C -0.182 4.182 18 C -0.114 4.114 19 C 0.284 3.716 20 F -0.209 7.209 21 F -0.191 7.191 22 C -0.153 4.153 23 C -0.081 4.081 24 H 0.291 0.709 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 -6.993 -4.494 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.179 4.179 3 Si 0.895 3.105 4 H -0.201 1.201 5 H -0.185 1.185 6 H -0.214 1.214 7 C -0.510 4.510 8 H 0.108 0.892 9 C 0.127 3.873 10 C -0.314 4.314 11 C 0.125 3.875 12 F -0.143 7.143 13 C -0.313 4.313 14 C -0.054 4.054 15 C -0.193 4.193 16 C -0.013 4.013 17 C -0.200 4.200 18 C -0.151 4.151 19 C 0.248 3.752 20 F -0.190 7.190 21 F -0.172 7.172 22 C -0.191 4.191 23 C -0.118 4.118 24 H 0.102 0.898 25 H 0.135 0.865 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.151 -5.370 -4.447 8.669 hybrid contribution -0.075 -1.613 0.154 1.622 sum 5.076 -6.983 -4.293 9.642 Atomic orbital electron populations 1.70498 1.08126 1.33545 1.29368 1.27419 0.95633 1.04660 0.90231 0.83627 0.75704 0.72990 0.78204 1.20108 1.18460 1.21355 1.20721 0.94561 0.97179 1.38511 0.89197 1.18445 0.92282 0.88786 0.87819 1.20964 0.94065 1.07876 1.08483 1.17551 0.92433 0.87724 0.89747 1.91362 1.88725 1.65752 1.68457 1.20021 0.98674 1.02334 1.10254 1.20399 0.93810 0.95926 0.95294 1.19705 0.92764 1.02148 1.04703 1.19301 0.95778 0.93090 0.93128 1.22038 1.01943 0.96260 0.99751 1.21267 1.03610 0.99673 0.90559 1.21131 0.88107 0.74916 0.91047 1.92970 1.94538 1.54375 1.77101 1.93040 1.67850 1.60677 1.95679 1.22620 0.93986 1.00032 1.02488 1.20450 1.02926 0.95725 0.92671 0.89753 0.86524 0.87856 0.87886 0.86715 0.88728 0.89385 0.88930 0.89673 0.89406 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.41 13.65 55.56 0.76 -19.65 16 2 C 0.04 1.08 5.43 -17.31 -0.09 0.99 16 3 Si 1.07 23.84 24.90 -169.99 -4.23 19.61 16 4 H -0.27 -5.97 6.44 56.52 0.36 -5.60 16 5 H -0.26 -5.78 7.01 56.52 0.40 -5.38 16 6 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.48 -12.10 8.88 -37.93 -0.34 -12.44 16 8 H 0.09 2.32 6.93 -52.48 -0.36 1.96 16 9 C 0.13 3.13 5.30 -104.63 -0.55 2.57 16 10 C -0.29 -7.04 7.24 -38.86 -0.28 -7.32 16 11 C 0.14 3.27 7.25 -39.53 -0.29 2.98 16 12 F -0.16 -3.57 17.24 2.25 0.04 -3.54 16 13 C -0.29 -6.02 9.95 -39.43 -0.39 -6.42 16 14 C -0.04 -0.71 9.78 -39.26 -0.38 -1.09 16 15 C -0.19 -4.06 5.23 -102.48 -0.54 -4.60 16 16 C -0.01 -0.24 4.47 -103.19 -0.46 -0.70 16 17 C -0.18 -3.14 8.53 -36.48 -0.31 -3.45 16 18 C -0.11 -1.63 5.61 -28.16 -0.16 -1.79 16 19 C 0.28 4.27 2.14 -26.54 -0.06 4.22 16 20 F -0.21 -3.09 17.08 2.25 0.04 -3.05 16 21 F -0.19 -3.49 16.30 2.25 0.04 -3.45 16 22 C -0.15 -2.00 5.61 -26.46 -0.15 -2.15 16 23 C -0.08 -1.27 5.43 -28.09 -0.15 -1.42 16 24 H 0.29 7.27 8.72 -40.82 -0.36 6.91 16 25 H 0.12 2.81 4.39 -52.48 -0.23 2.58 16 26 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.11 2.10 7.95 -52.49 -0.42 1.69 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.51 7.91 -51.93 -0.41 1.10 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -25.92 293.29 -6.67 -32.59 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.57 Total: 3.68 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -4.15 Total: -30.62 kcal Atomic # 7 Polarization: -20.41 SS G_CDS: 0.76 Total: -19.65 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 0.11 Total: -10.04 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.23 Total: 19.61 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.92 -6.67 -32.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242235116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.171 kcal (2) G-P(sol) polarization free energy of solvation -25.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds