Wall clock time and date at job start Tue Mar 31 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47301 * 300.00406 * 3 2 1 6 6 H 1.48498 * 109.46969 * 60.00288 * 3 2 1 7 7 C 1.40105 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 199.65103 * 7 2 1 9 9 C 1.40678 * 119.99911 * 19.64725 * 7 2 1 10 10 C 1.41149 * 120.63226 * 36.41446 * 9 7 2 11 11 F 1.35104 * 120.11295 * 359.97438 * 10 9 7 12 12 C 1.37615 * 119.77333 * 180.23071 * 10 9 7 13 13 C 1.38702 * 121.16601 * 359.78084 * 12 10 9 14 14 C 1.37940 * 121.34381 * 359.97438 * 13 12 10 15 15 C 1.39443 * 120.11037 * 359.97438 * 14 13 12 16 16 C 1.47163 * 120.56485 * 179.97438 * 15 14 13 17 17 C 1.31697 * 118.11438 * 105.00262 * 16 15 14 18 18 C 1.50092 * 123.77581 * 180.42319 * 17 16 15 19 19 C 1.53006 * 110.13301 * 342.82829 * 18 17 16 20 20 F 1.39902 * 109.63065 * 169.48186 * 19 18 17 21 21 F 1.39904 * 109.62815 * 289.86800 * 19 18 17 22 22 C 1.53359 * 108.51353 * 49.77320 * 19 18 17 23 23 C 1.50095 * 118.11964 * 285.01153 * 16 15 14 24 24 H 0.97004 * 119.99668 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.41549 * 179.75336 * 12 10 9 26 26 H 1.08007 * 119.32473 * 179.97438 * 13 12 10 27 27 H 1.08001 * 119.94065 * 180.02562 * 14 13 12 28 28 H 1.08004 * 118.11214 * 0.41902 * 17 16 15 29 29 H 1.09006 * 109.35925 * 222.62562 * 18 17 16 30 30 H 1.09000 * 109.36280 * 103.03477 * 18 17 16 31 31 H 1.08995 * 109.63099 * 51.62711 * 22 19 18 32 32 H 1.08999 * 109.63404 * 172.22150 * 22 19 18 33 33 H 1.09001 * 109.36024 * 42.61472 * 23 16 15 34 34 H 1.09010 * 109.24729 * 282.96236 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7018 1.3464 -0.0006 5 1 1.8830 2.3965 -1.2124 6 1 1.8831 2.3964 1.2125 7 6 2.0083 -1.2133 -0.0005 8 1 3.0412 -1.2407 0.3140 9 6 1.3663 -2.3960 -0.4107 10 6 0.4262 -2.3761 -1.4634 11 9 0.1333 -1.2148 -2.0887 12 6 -0.1948 -3.5426 -1.8471 13 6 0.0887 -4.7467 -1.2198 14 6 1.0029 -4.8212 -0.1895 15 6 1.6650 -3.6726 0.2427 16 6 2.6417 -3.7404 1.3413 17 6 3.9215 -3.6671 1.0394 18 6 5.0237 -3.7321 2.0560 19 6 4.4659 -3.4649 3.4555 20 9 5.4406 -3.7609 4.4144 21 9 4.0928 -2.1209 3.5639 22 6 3.2415 -4.3627 3.6712 23 6 2.1221 -3.8894 2.7416 24 1 -0.4850 0.8401 0.0004 25 1 -0.9161 -3.5201 -2.6506 26 1 -0.4165 -5.6444 -1.5447 27 1 1.2067 -5.7709 0.2827 28 1 4.1935 -3.5537 0.0003 29 1 5.7788 -2.9826 1.8188 30 1 5.4799 -4.7218 2.0317 31 1 3.4991 -5.3957 3.4376 32 1 2.9119 -4.2899 4.7077 33 1 1.3121 -4.6187 2.7507 34 1 1.7460 -2.9273 3.0896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242236726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:33 Heat of formation + Delta-G solvation = -136.384224 kcal Electronic energy + Delta-G solvation = -22360.175107 eV Core-core repulsion = 18613.920168 eV Total energy + Delta-G solvation = -3746.254940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89303 -48.92128 -47.91168 -39.62596 -37.74172 -35.53783 -32.77396 -31.99170 -31.31128 -29.24537 -27.01225 -24.60954 -23.70314 -22.73304 -21.98885 -19.37002 -19.25293 -18.42245 -17.73301 -17.33046 -17.18752 -16.50196 -16.26638 -15.99036 -15.66349 -15.47753 -15.03919 -14.82289 -14.53476 -14.22195 -14.04743 -13.79417 -13.64283 -13.49074 -13.29780 -13.22854 -13.09617 -12.95847 -12.55142 -12.38163 -12.26764 -12.19184 -11.77294 -11.28487 -11.09063 -10.97821 -9.64506 -9.15249 -9.03982 -8.72066 -6.36917 0.69514 0.95034 1.32458 1.40757 1.42807 1.46059 2.16708 2.69974 2.83355 3.16087 3.41628 3.43521 3.54080 4.08957 4.18201 4.21742 4.28661 4.39510 4.50388 4.58961 4.64446 4.72889 4.83339 4.86788 4.93288 5.02644 5.16884 5.17972 5.30297 5.55128 5.66260 5.82438 6.00481 6.04248 6.21436 6.26040 6.51577 6.81694 6.96512 8.27839 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.007690 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.674550 B = 3640.119632 C = 4986.476321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.039 3.961 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.073 3.927 10 C -0.016 4.016 11 F -0.162 7.162 12 C -0.138 4.138 13 C -0.210 4.210 14 C -0.086 4.086 15 C -0.160 4.160 16 C -0.034 4.034 17 C -0.171 4.171 18 C -0.110 4.110 19 C 0.277 3.723 20 F -0.206 7.206 21 F -0.215 7.215 22 C -0.143 4.143 23 C -0.075 4.075 24 H 0.287 0.713 25 H 0.112 0.888 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -8.213 5.330 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.506 4.506 8 H 0.100 0.900 9 C 0.070 3.930 10 C -0.037 4.037 11 F -0.141 7.141 12 C -0.157 4.157 13 C -0.230 4.230 14 C -0.104 4.104 15 C -0.161 4.161 16 C -0.034 4.034 17 C -0.189 4.189 18 C -0.147 4.147 19 C 0.241 3.759 20 F -0.187 7.187 21 F -0.196 7.196 22 C -0.181 4.181 23 C -0.112 4.112 24 H 0.097 0.903 25 H 0.130 0.870 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.037 -7.987 5.347 11.350 hybrid contribution -0.154 1.647 -0.387 1.698 sum 5.883 -6.340 4.960 9.971 Atomic orbital electron populations 1.69796 1.09093 1.30668 1.33784 1.26592 0.95228 1.04177 0.91805 0.85412 0.79981 0.77353 0.78744 1.17870 1.19392 1.18992 1.19438 0.99103 0.91859 1.40172 0.89952 1.18916 0.91042 0.93553 0.89457 1.18131 1.06289 0.81018 0.98233 1.91262 1.92800 1.48925 1.81162 1.20849 1.00598 0.92598 1.01627 1.20422 1.04528 0.96320 1.01683 1.21018 0.95714 0.96946 0.96772 1.20022 1.03940 0.92623 0.99526 1.19394 0.92601 0.97944 0.93467 1.22101 0.92784 1.05022 0.99042 1.21305 0.97902 1.06139 0.89344 1.21419 0.87827 0.78193 0.88471 1.92973 1.65540 1.93121 1.67052 1.92998 1.92158 1.37584 1.96863 1.22588 0.92480 1.00708 1.02301 1.20321 0.98209 1.01957 0.90712 0.90288 0.86961 0.84956 0.84813 0.88051 0.88919 0.85242 0.85975 0.88048 0.88607 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.43 11.09 21.86 0.24 -44.19 16 2 C 0.04 2.06 4.54 85.30 0.39 2.45 16 3 Si 0.96 40.84 29.60 68.60 2.03 42.87 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.48 -25.60 8.28 23.32 0.19 -25.40 16 8 H 0.08 4.34 7.01 -2.91 -0.02 4.32 16 9 C 0.07 3.85 5.56 -19.82 -0.11 3.74 16 10 C -0.02 -0.87 6.69 22.84 0.15 -0.72 16 11 F -0.16 -9.19 14.28 44.97 0.64 -8.55 16 12 C -0.14 -6.26 9.94 22.23 0.22 -6.04 16 13 C -0.21 -8.27 9.98 22.31 0.22 -8.05 16 14 C -0.09 -3.33 9.78 22.49 0.22 -3.11 16 15 C -0.16 -6.99 5.23 -18.49 -0.10 -7.09 16 16 C -0.03 -1.25 4.52 -18.39 -0.08 -1.34 16 17 C -0.17 -5.75 8.60 24.81 0.21 -5.53 16 18 C -0.11 -2.87 5.61 29.66 0.17 -2.71 16 19 C 0.28 7.77 2.13 30.72 0.07 7.84 16 20 F -0.21 -5.54 17.08 44.97 0.77 -4.77 16 21 F -0.21 -7.72 16.34 44.97 0.73 -6.99 16 22 C -0.14 -3.43 5.60 30.72 0.17 -3.26 16 23 C -0.08 -2.37 5.44 29.66 0.16 -2.20 16 24 H 0.29 14.49 8.29 -92.71 -0.77 13.72 16 25 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 27 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 28 H 0.10 3.66 7.95 -2.91 -0.02 3.64 16 29 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.12 2.23 8.12 -2.39 -0.02 2.21 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.06 2.21 7.93 -2.38 -0.02 2.19 16 Total: -1.00 -62.23 297.63 7.42 -54.81 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.12 Total: 18.25 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 1.88 Total: -51.43 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.24 Total: -44.19 kcal Atomic # 9 Polarization: -22.46 SS G_CDS: 2.14 Total: -20.31 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -62.23 7.42 -54.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242236726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.579 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds