Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86801 * 120.00039 * 2 1 4 4 H 1.48500 * 109.46974 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47305 * 299.99438 * 3 2 1 6 6 H 1.48497 * 109.47414 * 59.99767 * 3 2 1 7 7 C 1.40075 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00580 * 163.57997 * 7 2 1 9 9 C 1.40886 * 119.99764 * 343.57346 * 7 2 1 10 10 C 1.40748 * 120.33159 * 333.55580 * 9 7 2 11 11 C 1.36435 * 119.98806 * 180.24749 * 10 9 7 12 12 C 1.38921 * 120.68166 * 359.74407 * 11 10 9 13 13 C 1.38089 * 120.68059 * 359.97438 * 12 11 10 14 14 C 1.39161 * 119.97847 * 359.97438 * 13 12 11 15 15 C 1.47869 * 120.33606 * 179.97438 * 14 13 12 16 16 C 1.39670 * 120.15046 * 129.97638 * 15 14 13 17 17 C 1.37904 * 119.84855 * 180.02562 * 16 15 14 18 18 C 1.38418 * 120.15068 * 359.73343 * 17 16 15 19 19 C 1.38367 * 120.29927 * 0.54687 * 18 17 16 20 20 C 1.50703 * 119.92456 * 179.72552 * 19 18 17 21 21 C 1.50696 * 109.47097 * 269.72144 * 20 19 18 22 22 O 1.20822 * 120.00002 * 0.02562 * 21 20 19 23 23 O 1.34235 * 120.00130 * 179.97438 * 21 20 19 24 24 C 1.37949 * 120.15169 * 359.44898 * 19 18 17 25 25 H 0.97004 * 119.99817 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00771 * 359.97236 * 10 9 7 27 27 H 1.07998 * 119.66124 * 179.76289 * 11 10 9 28 28 H 1.08004 * 119.66442 * 180.02562 * 12 11 10 29 29 H 1.07998 * 120.01414 * 179.97438 * 13 12 11 30 30 H 1.08001 * 120.07129 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.92441 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.84622 * 180.26665 * 18 17 16 33 33 H 1.09003 * 109.47000 * 149.71969 * 20 19 18 34 34 H 1.09003 * 109.47060 * 29.72438 * 20 19 18 35 35 H 0.96695 * 116.99981 * 180.02562 * 23 21 20 36 36 H 1.07993 * 120.07970 * 180.25741 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3463 0.0006 5 1 1.8831 2.3964 -1.2126 6 1 1.8829 2.3965 1.2124 7 6 2.0081 -1.2131 0.0005 8 1 3.0551 -1.2323 -0.2638 9 6 1.3468 -2.4081 0.3461 10 6 0.2228 -2.3793 1.1929 11 6 -0.4092 -3.5413 1.5271 12 6 0.0413 -4.7600 1.0355 13 6 1.1377 -4.8201 0.1981 14 6 1.8028 -3.6518 -0.1617 15 6 2.9780 -3.7071 -1.0574 16 6 3.0487 -2.8715 -2.1743 17 6 4.1474 -2.9285 -3.0058 18 6 5.1812 -3.8074 -2.7324 19 6 5.1151 -4.6421 -1.6309 20 6 6.2426 -5.6001 -1.3447 21 6 5.9732 -6.9131 -2.0335 22 8 4.9689 -7.0561 -2.6898 23 8 6.8495 -7.9235 -1.9187 24 6 4.0219 -4.5954 -0.7907 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1365 -1.4379 1.5816 27 1 -1.2688 -3.5134 2.1803 28 1 -0.4717 -5.6698 1.3103 29 1 1.4790 -5.7734 -0.1775 30 1 2.2447 -2.1822 -2.3862 31 1 4.2031 -2.2832 -3.8700 32 1 6.0414 -3.8450 -3.3845 33 1 6.3174 -5.7625 -0.2694 34 1 7.1783 -5.1809 -1.7147 35 1 6.6337 -8.7462 -2.3788 36 1 3.9733 -5.2444 0.0710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242262507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = -60.682046 kcal Electronic energy + Delta-G solvation = -20916.201896 eV Core-core repulsion = 17715.086390 eV Total energy + Delta-G solvation = -3201.115507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27939 -38.76765 -37.19457 -36.04388 -33.75261 -32.84417 -31.32161 -29.69688 -28.30002 -27.41666 -25.32776 -22.49001 -22.42633 -20.99415 -20.48389 -19.24660 -18.06292 -17.33660 -16.48652 -15.94595 -15.86064 -15.41837 -14.85585 -14.44134 -14.20975 -13.43662 -13.36512 -13.19160 -12.68988 -12.58900 -12.25536 -12.20072 -11.78184 -11.60712 -11.47965 -11.24111 -11.12379 -10.92467 -10.60075 -10.54038 -10.50813 -10.37568 -9.67341 -9.42114 -9.25808 -8.28827 -8.13822 -7.43675 -7.19712 -6.81506 -4.40405 1.85283 1.99195 2.26625 2.74362 2.97812 3.04195 3.09943 3.19144 3.23863 3.87945 4.50305 4.58772 4.81340 5.07071 5.43819 5.47578 5.56979 5.59358 5.70600 5.93545 6.19159 6.20188 6.22058 6.38246 6.47486 6.56387 6.67365 6.77264 6.98791 7.05170 7.13810 7.18121 7.28058 7.47112 7.54762 7.65818 7.89394 7.92276 8.01083 8.06394 8.22053 8.55893 8.80301 8.89932 10.09316 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.005291 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.204590 B = 5290.989017 C = 6454.877474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.451 4.451 8 H 0.084 0.916 9 C 0.131 3.869 10 C -0.159 4.159 11 C -0.101 4.101 12 C -0.243 4.243 13 C -0.071 4.071 14 C -0.189 4.189 15 C 0.023 3.977 16 C -0.090 4.090 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.093 4.093 20 C -0.065 4.065 21 C 0.474 3.526 22 O -0.500 6.500 23 O -0.524 6.524 24 C -0.113 4.113 25 H 0.281 0.719 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.406 0.594 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.023 -6.010 -2.399 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.120 4.120 12 C -0.263 4.263 13 C -0.089 4.089 14 C -0.190 4.190 15 C 0.023 3.977 16 C -0.108 4.108 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.093 4.093 20 C -0.102 4.102 21 C 0.316 3.684 22 O -0.387 6.387 23 O -0.336 6.336 24 C -0.131 4.131 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.265 0.735 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.623 -5.505 -2.393 11.342 hybrid contribution 0.054 0.198 -0.332 0.390 sum 9.677 -5.307 -2.725 11.369 Atomic orbital electron populations 1.69804 1.07636 1.29334 1.34515 1.25945 0.94679 1.01328 0.92240 0.86314 0.81236 0.80983 0.78659 1.18194 1.19879 1.19671 1.19616 0.97897 0.90745 1.39707 0.89815 1.17532 0.90472 0.91045 0.88158 1.21036 0.99116 0.96927 1.00724 1.20479 0.98562 0.93400 0.99518 1.20279 1.01919 0.96291 1.07780 1.20585 0.95625 0.95662 0.97025 1.18610 1.00553 0.93970 1.05874 1.18775 0.92874 0.92964 0.93057 1.21484 0.97784 0.98160 0.93357 1.20952 0.94484 0.99291 0.99742 1.20722 0.99109 0.97788 0.97077 1.18941 0.95310 0.97767 0.97274 1.20224 0.99728 0.88155 1.02128 1.23637 0.80357 0.85743 0.78683 1.90765 1.27478 1.82287 1.38130 1.84543 1.51882 1.25560 1.71651 1.21069 0.93033 0.99762 0.99216 0.90762 0.86458 0.89497 0.89457 0.89247 0.85249 0.86830 0.87409 0.87082 0.87249 0.73541 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.58 11.00 55.55 0.61 -18.97 16 2 C 0.08 1.84 5.15 -17.32 -0.09 1.75 16 3 Si 0.90 18.13 29.59 -169.99 -5.03 13.10 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.45 -11.36 7.14 -37.89 -0.27 -11.63 16 8 H 0.08 2.09 6.65 -52.49 -0.35 1.74 16 9 C 0.13 3.36 5.56 -106.56 -0.59 2.77 16 10 C -0.16 -4.04 8.62 -39.28 -0.34 -4.37 16 11 C -0.10 -2.36 9.96 -39.98 -0.40 -2.75 16 12 C -0.24 -5.49 10.03 -39.38 -0.39 -5.88 16 13 C -0.07 -1.62 9.51 -39.29 -0.37 -2.00 16 14 C -0.19 -4.54 5.52 -104.22 -0.58 -5.12 16 15 C 0.02 0.51 4.92 -104.90 -0.52 -0.01 16 16 C -0.09 -1.87 8.02 -39.17 -0.31 -2.18 16 17 C -0.13 -2.24 10.03 -39.64 -0.40 -2.64 16 18 C -0.13 -2.09 9.69 -39.47 -0.38 -2.47 16 19 C -0.09 -1.52 4.37 -104.68 -0.46 -1.97 16 20 C -0.06 -0.78 5.94 -29.04 -0.17 -0.96 16 21 C 0.47 6.18 8.32 36.00 0.30 6.48 16 22 O -0.50 -8.59 16.79 -18.75 -0.31 -8.90 16 23 O -0.52 -5.07 13.42 -39.27 -0.53 -5.60 16 24 C -0.11 -2.15 9.17 -39.17 -0.36 -2.50 16 25 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 26 H 0.12 3.05 6.25 -52.49 -0.33 2.72 16 27 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.09 1.89 8.04 -52.49 -0.42 1.47 16 30 H 0.13 2.85 7.34 -52.49 -0.39 2.47 16 31 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.41 2.30 9.10 45.56 0.41 2.71 16 36 H 0.11 2.03 8.04 -52.49 -0.42 1.60 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -29.78 316.20 -8.99 -38.77 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.16 Total: 10.32 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -5.33 Total: -33.49 kcal Atomic # 7 Polarization: -19.58 SS G_CDS: 0.61 Total: -18.97 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.84 Total: -14.50 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.78 -8.99 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242262507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.913 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds