Wall clock time and date at job start Tue Mar 31 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48502 * 109.47049 * 274.65569 * 3 2 1 5 5 H 1.48503 * 109.46922 * 34.65211 * 3 2 1 6 6 H 1.48499 * 109.47428 * 154.65286 * 3 2 1 7 7 C 1.40013 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00076 * 162.13561 * 7 2 1 9 9 C 1.41034 * 119.99746 * 342.13664 * 7 2 1 10 10 C 1.40929 * 120.11510 * 155.02199 * 9 7 2 11 11 C 1.36257 * 119.87903 * 180.02562 * 10 9 7 12 12 C 1.39933 * 120.11713 * 0.02562 * 11 10 9 13 13 C 1.47987 * 119.88088 * 179.97438 * 12 11 10 14 14 C 1.39626 * 120.14263 * 0.02562 * 13 12 11 15 15 C 1.37919 * 119.85234 * 180.02562 * 14 13 12 16 16 C 1.38409 * 120.14330 * 0.02562 * 15 14 13 17 17 C 1.38365 * 120.29378 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.92409 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.47397 * 89.99913 * 18 17 16 20 20 O 1.20827 * 119.99414 * 359.97438 * 19 18 17 21 21 O 1.34228 * 120.00099 * 179.97438 * 19 18 17 22 22 C 1.37953 * 120.14326 * 0.27263 * 17 16 15 23 23 C 1.39933 * 120.24084 * 0.27584 * 12 11 10 24 24 C 1.36256 * 120.11836 * 359.44216 * 23 12 11 25 25 H 0.97002 * 120.00008 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.06234 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.94081 * 180.02562 * 11 10 9 28 28 H 1.07997 * 120.06982 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.92310 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.84912 * 180.02562 * 16 15 14 31 31 H 1.09000 * 109.47768 * 329.99762 * 18 17 16 32 32 H 1.09002 * 109.46950 * 209.99403 * 18 17 16 33 33 H 0.96696 * 116.99343 * 180.02562 * 21 19 18 34 34 H 1.08009 * 120.07049 * 179.70531 * 22 17 16 35 35 H 1.08002 * 119.94366 * 179.70268 * 23 12 11 36 36 H 1.08007 * 120.05973 * 180.25398 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3911 2.1032 -1.3955 5 1 1.4920 2.6222 0.7961 6 1 3.5853 1.4138 0.5994 7 6 2.0081 -1.2125 -0.0005 8 1 3.0490 -1.2350 -0.2875 9 6 1.3538 -2.4046 0.3736 10 6 1.8230 -3.6468 -0.0985 11 6 1.1870 -4.7955 0.2655 12 6 0.0695 -4.7432 1.1062 13 6 -0.6176 -5.9940 1.4979 14 6 -0.1530 -7.2251 1.0309 15 6 -0.7983 -8.3870 1.3992 16 6 -1.9044 -8.3345 2.2295 17 6 -2.3700 -7.1178 2.6958 18 6 -3.5748 -7.0703 3.5998 19 6 -3.1290 -7.1653 5.0363 20 8 -1.9536 -7.2621 5.2989 21 8 -4.0378 -7.1423 6.0239 22 6 -1.7368 -5.9478 2.3308 23 6 -0.4043 -3.5120 1.5728 24 6 0.2277 -2.3578 1.2195 25 1 -0.4850 0.8401 -0.0004 26 1 2.6851 -3.6883 -0.7478 27 1 1.5459 -5.7481 -0.0954 28 1 0.7093 -7.2672 0.3820 29 1 -0.4401 -9.3398 1.0383 30 1 -2.4059 -9.2473 2.5153 31 1 -4.2358 -7.9056 3.3686 32 1 -4.1076 -6.1319 3.4461 33 1 -3.7038 -7.2056 6.9292 34 1 -2.1041 -4.9983 2.6916 35 1 -1.2701 -3.4769 2.2176 36 1 -0.1364 -1.4083 1.5835 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242263665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:48 Heat of formation + Delta-G solvation = -61.012660 kcal Electronic energy + Delta-G solvation = -20309.833404 eV Core-core repulsion = 17108.703561 eV Total energy + Delta-G solvation = -3201.129843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34545 -38.90020 -37.32652 -36.10825 -34.09713 -32.76597 -31.36894 -29.65251 -28.83671 -27.69230 -25.24037 -22.79969 -22.30812 -21.35180 -20.11066 -19.48121 -18.11408 -17.55165 -16.63644 -16.21222 -16.00539 -15.37764 -15.05182 -14.56910 -14.14999 -13.39757 -13.32036 -13.09799 -12.91775 -12.76880 -12.33405 -12.24984 -12.02494 -11.85015 -11.52493 -11.35912 -11.21062 -10.99997 -10.79449 -10.59063 -10.57155 -10.42134 -9.77469 -9.43688 -9.32587 -8.59879 -8.40710 -7.64450 -7.08781 -6.91208 -4.45438 1.56079 1.78586 2.21265 2.73809 2.97929 3.01033 3.05366 3.06315 3.26163 3.79531 4.25685 4.66804 4.69766 4.96879 5.32736 5.37802 5.42720 5.47747 5.63848 5.69459 5.90632 6.00184 6.18450 6.19099 6.42757 6.50742 6.55694 6.79864 6.85809 6.91522 6.94093 6.99046 7.16532 7.33033 7.46990 7.50669 7.83906 7.87132 7.91932 8.06151 8.13737 8.47696 8.70452 8.82912 9.97125 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.003673 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.093601 B = 7621.210322 C = 8485.330836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.447 4.447 8 H 0.082 0.918 9 C 0.119 3.881 10 C -0.231 4.231 11 C -0.062 4.062 12 C -0.207 4.207 13 C 0.026 3.974 14 C -0.141 4.141 15 C -0.110 4.110 16 C -0.145 4.145 17 C -0.076 4.076 18 C -0.068 4.068 19 C 0.475 3.525 20 O -0.500 6.500 21 O -0.523 6.523 22 C -0.126 4.126 23 C -0.074 4.074 24 C -0.172 4.172 25 H 0.284 0.716 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.407 0.593 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 -9.291 5.491 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.117 3.883 10 C -0.250 4.250 11 C -0.080 4.080 12 C -0.208 4.208 13 C 0.026 3.974 14 C -0.159 4.159 15 C -0.128 4.128 16 C -0.163 4.163 17 C -0.076 4.076 18 C -0.105 4.105 19 C 0.316 3.684 20 O -0.386 6.386 21 O -0.336 6.336 22 C -0.144 4.144 23 C -0.092 4.092 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.266 0.734 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.875 -9.109 5.137 12.515 hybrid contribution 0.524 0.727 0.564 1.059 sum -6.351 -8.382 5.701 11.962 Atomic orbital electron populations 1.69818 1.07792 1.29767 1.32802 1.26032 0.94788 1.01721 0.92055 0.86249 0.80833 0.80197 0.79274 1.19334 1.19808 1.18188 1.19723 0.98324 0.91331 1.38125 0.89972 1.17733 0.90742 0.92100 0.87765 1.20692 1.04232 0.92894 1.07181 1.20398 0.94663 0.96703 0.96251 1.18062 1.01729 0.90824 1.10175 1.18960 0.92518 0.93075 0.92827 1.21225 1.00863 0.91919 1.01857 1.20872 0.95847 0.97753 0.98295 1.20677 0.98566 0.96122 1.00979 1.18997 0.96259 0.94084 0.98284 1.20247 0.98004 1.06197 0.86056 1.23555 0.84005 0.72274 0.88542 1.90774 1.19080 1.44182 1.84585 1.84533 1.43408 1.85811 1.19799 1.20999 0.96621 0.97024 0.99794 1.20514 0.97898 0.92418 0.98414 1.20988 0.99671 0.96953 1.01548 0.90445 0.88711 0.88904 0.86297 0.86827 0.87285 0.87133 0.86927 0.73410 0.86410 0.89098 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.28 10.97 55.55 0.61 -18.67 16 2 C 0.07 1.78 5.13 -17.33 -0.09 1.69 16 3 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.43 9.03 -37.86 -0.34 -11.77 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.12 3.11 5.57 -106.80 -0.59 2.52 16 10 C -0.23 -5.57 9.73 -39.28 -0.38 -5.95 16 11 C -0.06 -1.40 9.36 -39.66 -0.37 -1.77 16 12 C -0.21 -4.68 5.90 -104.63 -0.62 -5.30 16 13 C 0.03 0.52 5.88 -104.88 -0.62 -0.09 16 14 C -0.14 -2.50 9.43 -39.18 -0.37 -2.87 16 15 C -0.11 -1.69 10.03 -39.64 -0.40 -2.09 16 16 C -0.15 -2.14 9.69 -39.47 -0.38 -2.53 16 17 C -0.08 -1.17 4.37 -104.68 -0.46 -1.62 16 18 C -0.07 -0.77 5.94 -29.03 -0.17 -0.94 16 19 C 0.47 6.01 8.32 36.01 0.30 6.31 16 20 O -0.50 -8.43 16.79 -18.75 -0.31 -8.75 16 21 O -0.52 -4.93 13.42 -39.25 -0.53 -5.45 16 22 C -0.13 -2.28 9.07 -39.18 -0.36 -2.63 16 23 C -0.07 -1.74 9.36 -39.66 -0.37 -2.11 16 24 C -0.17 -4.40 8.63 -39.28 -0.34 -4.74 16 25 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 26 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 27 H 0.09 1.83 6.18 -52.49 -0.32 1.50 16 28 H 0.12 1.98 6.18 -52.49 -0.32 1.65 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.41 2.22 9.10 45.56 0.41 2.64 16 34 H 0.12 2.05 6.18 -52.48 -0.32 1.73 16 35 H 0.09 1.92 6.18 -52.49 -0.32 1.60 16 36 H 0.12 3.07 6.18 -52.48 -0.32 2.74 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -30.23 314.09 -8.95 -39.19 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -2.86 Total: 10.08 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -5.56 Total: -33.88 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.61 Total: -18.67 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.84 Total: -14.20 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.23 -8.95 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242263665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.827 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds