Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38227 * 120.40700 * 2 1 4 4 C 1.39806 * 118.39903 * 180.23787 * 3 2 1 5 5 C 1.48273 * 120.42678 * 179.75691 * 4 3 2 6 6 C 1.39880 * 119.96906 * 359.74890 * 5 4 3 7 7 C 1.38215 * 120.41184 * 180.02562 * 6 5 4 8 8 C 1.38084 * 120.35640 * 359.96952 * 7 6 5 9 9 F 1.35103 * 120.03718 * 179.97438 * 8 7 6 10 10 C 1.41054 * 119.93065 * 359.73061 * 8 7 6 11 11 C 1.41324 * 120.20675 * 180.29939 * 10 8 7 12 12 H 1.08002 * 119.99588 * 24.88034 * 11 10 8 13 13 C 1.39913 * 120.00426 * 204.89024 * 11 10 8 14 14 N 1.30859 * 119.99750 * 17.79665 * 13 11 10 15 15 Si 1.86800 * 120.00163 * 197.80511 * 13 11 10 16 16 H 1.48494 * 109.47256 * 59.99761 * 15 13 11 17 17 H 1.48501 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99378 * 15 13 11 19 19 C 1.38759 * 119.96827 * 179.71902 * 5 4 3 20 20 C 1.39663 * 119.14218 * 359.48478 * 4 3 2 21 21 N 1.31374 * 120.74188 * 0.27077 * 20 4 3 22 22 C 1.32894 * 121.74326 * 359.97438 * 21 20 4 23 23 C 1.43204 * 119.60432 * 179.97438 * 22 21 20 24 24 N 3.47612 * 80.44375 * 179.73460 * 2 1 3 25 25 H 1.08994 * 109.47108 * 270.28424 * 1 2 3 26 26 H 1.09003 * 109.46760 * 30.28129 * 1 2 3 27 27 H 1.08996 * 109.47380 * 150.28025 * 1 2 3 28 28 H 1.08002 * 120.80048 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.79348 * 359.97340 * 6 5 4 30 30 H 1.08000 * 119.81877 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99888 * 180.02562 * 14 13 11 32 32 H 1.07995 * 120.17464 * 0.03014 * 19 5 4 33 33 H 1.08009 * 119.63046 * 180.25012 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2067 1.1921 0.0000 4 6 3.6039 1.1432 -0.0051 5 6 4.3991 2.3946 -0.0107 6 6 3.7511 3.6342 -0.0163 7 6 4.4834 4.8065 -0.0221 8 6 5.8637 4.7671 -0.0219 9 9 6.5730 5.9169 -0.0281 10 6 6.5323 3.5251 -0.0099 11 6 7.9447 3.4781 -0.0033 12 1 8.5109 4.3110 0.3868 13 6 8.6096 2.3526 -0.5021 14 7 7.9776 1.5101 -1.2787 15 14 10.3995 2.0527 -0.0595 16 1 10.5299 1.9225 1.4140 17 1 10.8673 0.8022 -0.7097 18 1 11.2239 3.1944 -0.5305 19 6 5.7854 2.3349 -0.0099 20 6 4.2409 -0.0997 0.0010 21 7 3.5424 -1.2123 0.0060 22 6 2.2134 -1.2035 0.0061 23 6 1.4978 -2.4439 0.0111 24 7 0.9300 -3.4278 0.0159 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5094 28 1 1.6865 2.1386 0.0004 29 1 2.6720 3.6756 -0.0169 30 1 3.9732 5.7583 -0.0268 31 1 8.4384 0.7297 -1.6243 32 1 6.2876 1.3788 -0.0056 33 1 5.3200 -0.1467 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242355834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = 14.411617 kcal Electronic energy + Delta-G solvation = -20200.565643 eV Core-core repulsion = 16911.538888 eV Total energy + Delta-G solvation = -3289.026755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.19712 -41.57497 -39.22947 -37.66419 -35.81228 -34.78184 -33.95073 -31.71234 -30.04615 -28.66270 -27.23244 -25.60798 -24.05801 -22.68914 -21.77942 -20.37906 -19.24899 -18.00419 -17.89289 -17.03803 -16.59603 -16.20804 -16.01385 -15.92259 -15.73512 -14.76816 -14.54313 -14.46833 -14.27133 -14.18676 -13.96413 -13.74029 -13.68809 -13.54460 -13.36842 -13.13880 -12.90899 -12.76649 -12.61309 -12.16957 -11.93184 -11.42049 -11.19621 -10.82988 -10.61359 -10.13528 -9.52041 -8.88215 -8.65107 -6.41874 -0.70856 0.19430 0.82018 0.92557 1.38529 1.39739 1.47932 1.51428 1.83376 2.19357 2.47012 2.60368 2.90940 3.52405 3.55866 3.64101 3.84335 3.92150 4.07757 4.09990 4.34722 4.47251 4.61570 4.71538 4.78331 4.94878 5.05659 5.09264 5.17074 5.20740 5.32250 5.47484 5.60669 5.71429 5.95795 5.99052 6.15958 6.21854 6.50264 6.73185 6.77106 6.84430 8.23944 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.004935 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.286383 B = 5672.903862 C = 7127.461042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.062 4.062 3 C -0.069 4.069 4 C -0.036 4.036 5 C -0.059 4.059 6 C -0.182 4.182 7 C -0.120 4.120 8 C -0.053 4.053 9 F -0.171 7.171 10 C 0.053 3.947 11 C -0.494 4.494 12 H 0.070 0.930 13 C 0.046 3.954 14 N -0.811 5.811 15 Si 0.976 3.024 16 H -0.260 1.260 17 H -0.263 1.263 18 H -0.265 1.265 19 C -0.137 4.137 20 C 0.095 3.905 21 N -0.464 5.464 22 C 0.142 3.858 23 C 0.294 3.706 24 N -0.429 5.429 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.181 0.819 29 H 0.152 0.848 30 H 0.136 0.864 31 H 0.294 0.706 32 H 0.125 0.875 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 -0.430 1.837 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.094 4.094 4 C -0.039 4.039 5 C -0.060 4.060 6 C -0.201 4.201 7 C -0.139 4.139 8 C -0.073 4.073 9 F -0.150 7.150 10 C 0.050 3.950 11 C -0.522 4.522 12 H 0.088 0.912 13 C -0.171 4.171 14 N -0.437 5.437 15 Si 0.797 3.203 16 H -0.184 1.184 17 H -0.187 1.187 18 H -0.189 1.189 19 C -0.156 4.156 20 C -0.066 4.066 21 N -0.174 5.174 22 C 0.005 3.995 23 C -0.022 4.022 24 N -0.106 5.106 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.198 0.802 29 H 0.170 0.830 30 H 0.154 0.846 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.847 -2.956 1.689 11.369 hybrid contribution 1.496 1.218 -0.024 1.929 sum -9.351 -1.738 1.665 9.656 Atomic orbital electron populations 1.20970 0.86860 1.04772 1.04662 1.20935 0.99063 0.90769 0.95934 1.21844 0.91731 0.99467 0.96385 1.20170 0.94639 0.93490 0.95563 1.18566 0.92408 0.91925 1.03075 1.20734 0.99770 0.89588 1.09970 1.20809 0.90860 0.99967 1.02280 1.18408 0.90346 0.81223 1.17328 1.91248 1.79867 1.48627 1.95263 1.17867 0.94482 0.90628 0.92062 1.19642 0.91895 1.03214 1.37489 0.91200 1.26562 1.04886 0.93998 0.91659 1.69784 1.40744 1.11334 1.21796 0.85330 0.76438 0.78725 0.79852 1.18392 1.18713 1.18924 1.21380 0.92079 0.98047 1.04111 1.22871 1.00425 0.86375 0.96890 1.67400 1.06772 1.32421 1.10758 1.16482 0.88949 0.87244 1.06867 1.25021 0.92377 0.91783 0.93051 1.81213 1.10337 1.09889 1.09195 0.88416 0.87531 0.91614 0.80157 0.83033 0.84629 0.89518 0.85702 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.62 71.24 0.69 -0.86 16 2 C -0.06 -1.33 5.92 -19.55 -0.12 -1.44 16 3 C -0.07 -1.57 9.20 22.65 0.21 -1.37 16 4 C -0.04 -1.12 5.90 -19.88 -0.12 -1.24 16 5 C -0.06 -2.20 5.87 -20.09 -0.12 -2.31 16 6 C -0.18 -6.08 9.44 22.66 0.21 -5.87 16 7 C -0.12 -4.57 9.99 22.23 0.22 -4.35 16 8 C -0.05 -2.49 7.31 22.92 0.17 -2.32 16 9 F -0.17 -8.25 16.70 44.97 0.75 -7.50 16 10 C 0.05 2.64 5.58 -21.27 -0.12 2.53 16 11 C -0.49 -25.64 8.77 23.44 0.21 -25.43 16 12 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 13 C 0.05 2.17 5.14 85.24 0.44 2.61 16 14 N -0.81 -38.83 10.96 21.82 0.24 -38.59 16 15 Si 0.98 36.55 29.60 68.60 2.03 38.58 16 16 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 17 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 C -0.14 -6.23 8.07 22.95 0.19 -6.04 16 20 C 0.09 3.18 10.59 85.11 0.90 4.08 16 21 N -0.46 -15.06 10.26 -188.25 -1.93 -16.99 16 22 C 0.14 3.87 6.59 40.55 0.27 4.14 16 23 C 0.29 8.12 13.99 88.33 1.24 9.35 16 24 N -0.43 -12.70 18.54 19.01 0.35 -12.35 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 27 H 0.06 0.96 7.09 -2.39 -0.02 0.94 16 28 H 0.18 2.84 6.29 -2.91 -0.02 2.82 16 29 H 0.15 3.58 6.23 -2.91 -0.02 3.56 16 30 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 31 H 0.29 12.74 8.30 -92.71 -0.77 11.97 16 32 H 0.13 5.82 4.31 -2.91 -0.01 5.81 16 33 H 0.16 5.69 6.20 -2.91 -0.02 5.67 16 Total: -1.00 -58.21 299.79 6.88 -51.33 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.18 Total: 14.06 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.26 Total: -28.53 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.34 Total: -67.93 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.75 Total: -7.50 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -58.21 6.88 -51.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242355834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.739 kcal (2) G-P(sol) polarization free energy of solvation -58.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds