Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38115 * 120.39690 * 2 1 4 4 C 1.40098 * 118.38787 * 179.97438 * 3 2 1 5 5 C 1.47794 * 120.45455 * 180.02562 * 4 3 2 6 6 C 1.40031 * 119.89821 * 309.72134 * 5 4 3 7 7 C 1.36180 * 120.13590 * 179.72125 * 6 5 4 8 8 C 1.41015 * 119.93568 * 0.55489 * 7 6 5 9 9 C 1.40962 * 120.09865 * 179.69764 * 8 7 6 10 10 H 1.07994 * 120.00217 * 24.73434 * 9 8 7 11 11 C 1.40068 * 120.00183 * 204.72471 * 9 8 7 12 12 N 1.30760 * 119.99827 * 17.96379 * 11 9 8 13 13 Si 1.86796 * 120.00297 * 197.95490 * 11 9 8 14 14 H 1.48499 * 109.47353 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46792 * 120.00686 * 13 11 9 16 16 H 1.48493 * 109.47391 * 240.00559 * 13 11 9 17 17 C 1.40892 * 119.80452 * 359.72026 * 8 7 6 18 18 C 1.36460 * 119.86129 * 359.97438 * 17 8 7 19 19 F 1.35098 * 119.96911 * 179.97438 * 18 17 8 20 20 C 1.39960 * 119.09176 * 359.97438 * 4 3 2 21 21 N 1.31305 * 120.70123 * 0.02562 * 20 4 3 22 22 C 1.32959 * 121.77152 * 359.73195 * 21 20 4 23 23 C 1.43200 * 119.58335 * 180.26286 * 22 21 20 24 24 N 3.47634 * 80.42325 * 179.73885 * 2 1 3 25 25 H 1.08999 * 109.47248 * 89.99795 * 1 2 3 26 26 H 1.09005 * 109.47121 * 329.99836 * 1 2 3 27 27 H 1.09000 * 109.46957 * 209.99816 * 1 2 3 28 28 H 1.08007 * 120.80795 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.92998 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.03555 * 180.27480 * 7 6 5 31 31 H 0.96994 * 120.00555 * 179.97438 * 12 11 9 32 32 H 1.07997 * 120.07192 * 180.02562 * 17 8 7 33 33 H 1.07994 * 119.64505 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2058 1.1913 0.0000 4 6 3.6059 1.1422 0.0006 5 6 4.3992 2.3892 0.0011 6 6 4.1197 3.3947 -0.9325 7 6 4.8439 4.5480 -0.9326 8 6 5.8851 4.7252 0.0017 9 6 6.6410 5.9150 0.0005 10 1 6.2167 6.8240 -0.3995 11 6 7.9425 5.9184 0.5183 12 7 8.5866 4.7913 0.6753 13 14 8.7581 7.5330 0.9845 14 1 7.8248 8.6556 0.7126 15 1 9.1024 7.5147 2.4290 16 1 9.9952 7.7122 0.1830 17 6 6.1679 3.7094 0.9362 18 6 5.4330 2.5596 0.9331 19 9 5.7026 1.5840 1.8278 20 6 4.2431 -0.1040 0.0016 21 7 3.5431 -1.2148 0.0016 22 6 2.2136 -1.2045 0.0059 23 6 1.4970 -2.4443 0.0114 24 7 0.9286 -3.4279 0.0156 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.6855 2.1378 0.0004 29 1 3.3255 3.2570 -1.6512 30 1 4.6240 5.3243 -1.6505 31 1 9.4879 4.7936 1.0335 32 1 6.9640 3.8408 1.6540 33 1 5.3219 -0.1522 0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242356539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = 23.154308 kcal Electronic energy + Delta-G solvation = -20125.210806 eV Core-core repulsion = 16836.563163 eV Total energy + Delta-G solvation = -3288.647643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.88418 -40.17909 -37.69109 -36.41961 -34.34126 -33.64130 -32.38746 -29.41410 -29.36981 -27.52866 -26.13367 -23.87041 -22.24967 -21.37291 -20.47285 -19.09424 -17.91669 -16.61952 -16.14776 -15.62057 -15.08049 -14.91651 -14.60573 -14.58321 -14.36355 -13.57119 -13.20753 -13.16922 -13.04456 -12.86888 -12.73837 -12.62111 -12.49680 -12.27673 -12.09100 -11.82331 -11.39193 -11.24766 -11.01621 -10.59509 -10.28337 -10.00373 -9.71661 -9.42457 -9.36468 -8.73925 -7.77624 -7.54968 -7.17518 -4.77270 0.70179 1.41122 2.28999 2.62858 2.67812 2.83773 2.88103 2.92793 3.08725 3.63192 3.72726 4.03580 4.22631 4.66266 4.83269 5.08915 5.18305 5.24496 5.40646 5.45667 5.46565 5.55839 5.74878 5.94066 5.99089 6.20504 6.36300 6.49336 6.62094 6.69202 6.78479 6.87804 7.25895 7.36303 7.45486 7.50348 7.61443 7.86787 8.00345 8.19163 8.42214 8.49273 9.72311 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040647 B = 0.003692 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.691726 B = 7582.799032 C = 8026.970076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.094 4.094 4 C 0.008 3.992 5 C -0.256 4.256 6 C -0.034 4.034 7 C -0.233 4.233 8 C 0.136 3.864 9 C -0.432 4.432 10 H 0.090 0.910 11 C 0.071 3.929 12 N -0.764 5.764 13 Si 0.915 3.085 14 H -0.256 1.256 15 H -0.268 1.268 16 H -0.270 1.270 17 C -0.210 4.210 18 C 0.141 3.859 19 F -0.160 7.160 20 C 0.097 3.903 21 N -0.443 5.443 22 C 0.136 3.864 23 C 0.284 3.716 24 N -0.419 5.419 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.290 0.710 32 H 0.131 0.869 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 0.186 -0.710 6.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.119 4.119 4 C 0.005 3.995 5 C -0.259 4.259 6 C -0.053 4.053 7 C -0.253 4.253 8 C 0.132 3.868 9 C -0.459 4.459 10 H 0.108 0.892 11 C -0.151 4.151 12 N -0.386 5.386 13 Si 0.738 3.262 14 H -0.179 1.179 15 H -0.192 1.192 16 H -0.195 1.195 17 C -0.230 4.230 18 C 0.122 3.878 19 F -0.139 7.139 20 C -0.064 4.064 21 N -0.152 5.152 22 C -0.001 4.001 23 C -0.032 4.032 24 N -0.097 5.097 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.746 -2.295 -0.603 7.151 hybrid contribution 0.545 1.635 0.350 1.758 sum -6.202 -0.660 -0.253 6.242 Atomic orbital electron populations 1.20824 0.90112 1.03358 1.03015 1.20591 0.97010 0.92292 0.98247 1.21575 0.93271 0.97511 0.99521 1.20057 0.93061 0.94479 0.91883 1.17734 1.04715 0.96529 1.06882 1.20150 0.97173 0.92367 0.95563 1.20713 1.03213 0.98428 1.02929 1.17483 0.89827 0.91714 0.87740 1.19836 0.97203 0.96618 1.32276 0.89214 1.26145 0.97671 0.98619 0.92675 1.69774 1.11821 1.28298 1.28733 0.86123 0.79398 0.81323 0.79314 1.17937 1.19245 1.19515 1.20950 1.03713 0.94395 1.03905 1.17318 0.95523 0.86466 0.88535 1.91369 1.93388 1.62229 1.66908 1.23002 1.00178 0.86057 0.97211 1.67378 1.05611 1.32470 1.09731 1.16180 0.89252 0.86293 1.08337 1.25087 0.92736 0.91983 0.93370 1.81184 1.09720 1.09704 1.09069 0.90343 0.90348 0.91555 0.83936 0.88072 0.87884 0.89902 0.85134 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.62 36.00 0.35 -0.80 16 2 C -0.08 -1.02 5.92 -104.14 -0.62 -1.63 16 3 C -0.09 -1.33 9.34 -38.93 -0.36 -1.70 16 4 C 0.01 0.14 5.32 -104.65 -0.56 -0.42 16 5 C -0.26 -4.97 5.52 -104.57 -0.58 -5.55 16 6 C -0.03 -0.64 9.46 -39.65 -0.38 -1.01 16 7 C -0.23 -4.80 9.73 -39.27 -0.38 -5.18 16 8 C 0.14 3.13 5.57 -106.81 -0.60 2.53 16 9 C -0.43 -9.83 9.03 -37.86 -0.34 -10.17 16 10 H 0.09 1.92 7.91 -52.49 -0.42 1.50 16 11 C 0.07 1.55 5.13 -17.32 -0.09 1.46 16 12 N -0.76 -17.40 10.96 55.55 0.61 -16.79 16 13 Si 0.92 16.14 29.60 -169.99 -5.03 11.11 16 14 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 15 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 16 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 17 C -0.21 -4.88 8.60 -39.22 -0.34 -5.22 16 18 C 0.14 3.05 7.11 -39.48 -0.28 2.77 16 19 F -0.16 -3.40 15.87 2.25 0.04 -3.36 16 20 C 0.10 1.66 10.03 -17.13 -0.17 1.49 16 21 N -0.44 -7.53 10.26 -10.76 -0.11 -7.64 16 22 C 0.14 2.08 6.59 -84.93 -0.56 1.52 16 23 C 0.28 4.34 13.98 -22.47 -0.31 4.03 16 24 N -0.42 -6.74 18.54 41.84 0.78 -5.97 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.07 0.67 7.08 -51.93 -0.37 0.30 16 28 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.10 1.61 8.04 -52.49 -0.42 1.18 16 30 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.29 5.93 8.29 -40.82 -0.34 5.59 16 32 H 0.13 3.19 6.16 -52.49 -0.32 2.86 16 33 H 0.16 2.75 7.78 -52.49 -0.41 2.34 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -24.39 305.12 -7.10 -31.48 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.76 Total: 4.44 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -5.21 Total: -17.88 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 1.27 Total: -30.40 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.39 -7.10 -31.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242356539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.637 kcal (2) G-P(sol) polarization free energy of solvation -24.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds