Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38115 * 120.39690 * 2 1 4 4 C 1.40098 * 118.38787 * 179.97438 * 3 2 1 5 5 C 1.47794 * 120.45455 * 180.02562 * 4 3 2 6 6 C 1.40031 * 119.89821 * 309.72134 * 5 4 3 7 7 C 1.36180 * 120.13590 * 179.72125 * 6 5 4 8 8 C 1.41015 * 119.93568 * 0.55489 * 7 6 5 9 9 C 1.40962 * 120.09865 * 179.69764 * 8 7 6 10 10 H 1.07994 * 120.00217 * 24.73434 * 9 8 7 11 11 C 1.40068 * 120.00183 * 204.72471 * 9 8 7 12 12 N 1.30760 * 119.99827 * 17.96379 * 11 9 8 13 13 Si 1.86796 * 120.00297 * 197.95490 * 11 9 8 14 14 H 1.48499 * 109.47353 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46792 * 120.00686 * 13 11 9 16 16 H 1.48493 * 109.47391 * 240.00559 * 13 11 9 17 17 C 1.40892 * 119.80452 * 359.72026 * 8 7 6 18 18 C 1.36460 * 119.86129 * 359.97438 * 17 8 7 19 19 F 1.35098 * 119.96911 * 179.97438 * 18 17 8 20 20 C 1.39960 * 119.09176 * 359.97438 * 4 3 2 21 21 N 1.31305 * 120.70123 * 0.02562 * 20 4 3 22 22 C 1.32959 * 121.77152 * 359.73195 * 21 20 4 23 23 C 1.43200 * 119.58335 * 180.26286 * 22 21 20 24 24 N 3.47634 * 80.42325 * 179.73885 * 2 1 3 25 25 H 1.08999 * 109.47248 * 89.99795 * 1 2 3 26 26 H 1.09005 * 109.47121 * 329.99836 * 1 2 3 27 27 H 1.09000 * 109.46957 * 209.99816 * 1 2 3 28 28 H 1.08007 * 120.80795 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.92998 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.03555 * 180.27480 * 7 6 5 31 31 H 0.96994 * 120.00555 * 179.97438 * 12 11 9 32 32 H 1.07997 * 120.07192 * 180.02562 * 17 8 7 33 33 H 1.07994 * 119.64505 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2058 1.1913 0.0000 4 6 3.6059 1.1422 0.0006 5 6 4.3992 2.3892 0.0011 6 6 4.1197 3.3947 -0.9325 7 6 4.8439 4.5480 -0.9326 8 6 5.8851 4.7252 0.0017 9 6 6.6410 5.9150 0.0005 10 1 6.2167 6.8240 -0.3995 11 6 7.9425 5.9184 0.5183 12 7 8.5866 4.7913 0.6753 13 14 8.7581 7.5330 0.9845 14 1 7.8248 8.6556 0.7126 15 1 9.1024 7.5147 2.4290 16 1 9.9952 7.7122 0.1830 17 6 6.1679 3.7094 0.9362 18 6 5.4330 2.5596 0.9331 19 9 5.7026 1.5840 1.8278 20 6 4.2431 -0.1040 0.0016 21 7 3.5431 -1.2148 0.0016 22 6 2.2136 -1.2045 0.0059 23 6 1.4970 -2.4443 0.0114 24 7 0.9286 -3.4279 0.0156 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.6855 2.1378 0.0004 29 1 3.3255 3.2570 -1.6512 30 1 4.6240 5.3243 -1.6505 31 1 9.4879 4.7936 1.0335 32 1 6.9640 3.8408 1.6540 33 1 5.3219 -0.1522 0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242356539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = 13.079712 kcal Electronic energy + Delta-G solvation = -20125.647674 eV Core-core repulsion = 16836.563163 eV Total energy + Delta-G solvation = -3289.084511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.58344 -41.43439 -39.27317 -37.69415 -35.89984 -34.75467 -33.81023 -31.03250 -30.90787 -28.55505 -27.61810 -25.25998 -23.55377 -22.98181 -21.93946 -20.33968 -19.55112 -17.92801 -17.74184 -17.05619 -16.64822 -16.45928 -16.14453 -15.85610 -15.70876 -14.98934 -14.54121 -14.35771 -14.28514 -14.12701 -13.97487 -13.88016 -13.77336 -13.63047 -13.42412 -13.10613 -12.85350 -12.65711 -12.52487 -12.05162 -11.89498 -11.55893 -11.21771 -10.71797 -10.65565 -10.02430 -9.40950 -9.14399 -8.76752 -6.45787 -0.55917 0.21818 0.73793 1.01552 1.39354 1.41178 1.47109 1.56943 1.78601 2.16676 2.48959 2.57319 2.85716 3.52035 3.59922 3.69292 3.77890 3.91808 4.01326 4.22763 4.43845 4.45026 4.67885 4.76678 4.86478 4.99222 5.04259 5.08928 5.15179 5.21022 5.29073 5.50139 5.65158 5.74664 5.89024 5.97532 6.22498 6.23057 6.53381 6.73311 6.77305 6.84999 8.16280 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040647 B = 0.003692 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.691726 B = 7582.799032 C = 8026.970076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.060 4.060 3 C -0.077 4.077 4 C -0.012 4.012 5 C -0.240 4.240 6 C -0.028 4.028 7 C -0.240 4.240 8 C 0.111 3.889 9 C -0.468 4.468 10 H 0.095 0.905 11 C 0.034 3.966 12 N -0.804 5.804 13 Si 0.985 3.015 14 H -0.250 1.250 15 H -0.268 1.268 16 H -0.266 1.266 17 C -0.235 4.235 18 C 0.125 3.875 19 F -0.163 7.163 20 C 0.089 3.911 21 N -0.463 5.463 22 C 0.133 3.867 23 C 0.295 3.705 24 N -0.431 5.431 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.172 0.828 29 H 0.141 0.859 30 H 0.119 0.881 31 H 0.294 0.706 32 H 0.108 0.892 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.142 0.490 -1.445 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.102 4.102 4 C -0.015 4.015 5 C -0.242 4.242 6 C -0.046 4.046 7 C -0.259 4.259 8 C 0.107 3.893 9 C -0.495 4.495 10 H 0.113 0.887 11 C -0.185 4.185 12 N -0.428 5.428 13 Si 0.805 3.195 14 H -0.173 1.173 15 H -0.193 1.193 16 H -0.190 1.190 17 C -0.255 4.255 18 C 0.106 3.894 19 F -0.142 7.142 20 C -0.072 4.072 21 N -0.172 5.172 22 C -0.003 4.003 23 C -0.021 4.021 24 N -0.109 5.109 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.190 0.810 29 H 0.158 0.842 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.347 -2.002 -1.343 9.653 hybrid contribution 1.140 1.282 0.552 1.803 sum -8.207 -0.720 -0.791 8.276 Atomic orbital electron populations 1.20954 0.87072 1.04567 1.04618 1.20909 0.98926 0.90856 0.95818 1.21847 0.91865 0.99093 0.97398 1.19974 0.94327 0.93108 0.94078 1.17965 1.03425 0.97473 1.05380 1.20516 0.97466 0.91154 0.95501 1.20968 1.02678 0.99688 1.02573 1.17802 0.91067 0.91968 0.88418 1.20084 0.98130 0.96962 1.34331 0.88688 1.26950 0.97899 1.01626 0.91983 1.69834 1.12430 1.30313 1.30213 0.85099 0.78373 0.77336 0.78711 1.17287 1.19250 1.19047 1.20872 1.04319 0.95806 1.04543 1.17551 0.96413 0.86090 0.89328 1.91349 1.93543 1.62194 1.67140 1.22860 1.00012 0.86414 0.97905 1.67325 1.06710 1.32540 1.10619 1.16434 0.88896 0.87135 1.07883 1.25017 0.92355 0.91759 0.92957 1.81205 1.10323 1.09928 1.09429 0.88349 0.87904 0.91637 0.81043 0.84164 0.86310 0.89481 0.87438 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.62 71.23 0.69 -1.03 16 2 C -0.06 -1.37 5.92 -19.55 -0.12 -1.48 16 3 C -0.08 -1.89 9.34 22.69 0.21 -1.68 16 4 C -0.01 -0.39 5.32 -19.88 -0.11 -0.49 16 5 C -0.24 -9.04 5.52 -19.83 -0.11 -9.15 16 6 C -0.03 -1.00 9.46 22.23 0.21 -0.79 16 7 C -0.24 -9.68 9.73 22.47 0.22 -9.46 16 8 C 0.11 5.23 5.57 -21.28 -0.12 5.11 16 9 C -0.47 -21.91 9.03 23.38 0.21 -21.70 16 10 H 0.10 4.15 7.91 -2.91 -0.02 4.13 16 11 C 0.03 1.52 5.13 85.30 0.44 1.96 16 12 N -0.80 -38.47 10.96 21.85 0.24 -38.23 16 13 Si 0.98 33.74 29.60 68.60 2.03 35.77 16 14 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 15 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 16 H -0.27 -8.81 7.11 99.48 0.71 -8.10 16 17 C -0.24 -11.46 8.60 22.50 0.19 -11.26 16 18 C 0.13 5.55 7.11 22.34 0.16 5.71 16 19 F -0.16 -7.16 15.87 44.97 0.71 -6.45 16 20 C 0.09 2.99 10.03 85.19 0.85 3.84 16 21 N -0.46 -15.16 10.26 -187.95 -1.93 -17.09 16 22 C 0.13 3.76 6.59 40.56 0.27 4.02 16 23 C 0.30 8.33 13.98 88.33 1.23 9.57 16 24 N -0.43 -12.98 18.54 19.00 0.35 -12.63 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.11 8.09 -2.38 -0.02 1.09 16 27 H 0.06 1.04 7.08 -2.39 -0.02 1.02 16 28 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.14 3.83 8.04 -2.91 -0.02 3.81 16 30 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 32 H 0.11 5.64 6.16 -2.91 -0.02 5.62 16 33 H 0.15 5.31 7.78 -2.91 -0.02 5.29 16 Total: -1.00 -54.65 305.12 6.80 -47.84 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.16 Total: 17.62 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 4.23 Total: -26.84 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -1.34 Total: -67.95 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.71 Total: -6.45 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Total: -54.65 6.80 -47.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242356539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.922 kcal (2) G-P(sol) polarization free energy of solvation -54.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds