Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38129 * 120.40112 * 2 1 4 4 C 1.40073 * 118.38791 * 180.28583 * 3 2 1 5 5 C 1.47844 * 120.45512 * 179.71337 * 4 3 2 6 6 C 1.40107 * 119.86293 * 359.74445 * 5 4 3 7 7 C 1.36149 * 120.18098 * 180.02562 * 6 5 4 8 8 C 1.40989 * 119.90483 * 359.97438 * 7 6 5 9 9 C 1.40873 * 120.12869 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99937 * 204.81561 * 9 8 7 11 11 C 1.40072 * 120.00151 * 24.82111 * 9 8 7 12 12 N 1.30774 * 120.00110 * 17.84300 * 11 9 8 13 13 Si 1.86797 * 120.00094 * 197.83956 * 11 9 8 14 14 H 1.48499 * 109.47367 * 60.00104 * 13 11 9 15 15 H 1.48502 * 109.47445 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47454 * 300.00351 * 13 11 9 17 17 C 1.41205 * 119.73465 * 359.73126 * 8 7 6 18 18 F 1.35104 * 120.08914 * 180.29451 * 17 8 7 19 19 C 1.36537 * 119.81871 * 0.54067 * 17 8 7 20 20 C 1.39929 * 119.09514 * 359.44108 * 4 3 2 21 21 N 1.31313 * 120.70685 * 0.29293 * 20 4 3 22 22 C 1.32953 * 121.76961 * 359.97438 * 21 20 4 23 23 C 1.43199 * 119.58524 * 179.97438 * 22 21 20 24 24 N 3.47641 * 80.42336 * 179.72114 * 2 1 3 25 25 H 1.09007 * 109.47037 * 270.28100 * 1 2 3 26 26 H 1.09000 * 109.47194 * 30.27865 * 1 2 3 27 27 H 1.09000 * 109.47459 * 150.28048 * 1 2 3 28 28 H 1.07994 * 120.80754 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.90871 * 0.02562 * 6 5 4 30 30 H 1.07997 * 120.04951 * 179.97438 * 7 6 5 31 31 H 0.96998 * 120.00305 * 179.97438 * 12 11 9 32 32 H 1.08001 * 119.94989 * 179.75626 * 19 17 8 33 33 H 1.07999 * 119.64145 * 180.27425 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2059 1.1914 0.0000 4 6 3.6058 1.1422 -0.0061 5 6 4.3994 2.3895 -0.0128 6 6 3.7488 3.6303 -0.0184 7 6 4.4733 4.7831 -0.0250 8 6 5.8821 4.7278 -0.0258 9 6 6.6364 5.9176 -0.0332 10 1 7.6422 5.9169 -0.4265 11 6 6.0819 7.1016 0.4696 12 7 5.0334 7.0528 1.2497 13 14 6.8402 8.7501 0.0261 14 1 6.8006 8.9328 -1.4471 15 1 6.0734 9.8400 0.6813 16 1 8.2498 8.7880 0.4918 17 6 6.5339 3.4753 -0.0138 18 9 7.8836 3.4141 -0.0084 19 6 5.7965 2.3262 -0.0128 20 6 4.2429 -0.1037 -0.0001 21 7 3.5430 -1.2147 0.0054 22 6 2.2135 -1.2045 0.0060 23 6 1.4969 -2.4443 0.0115 24 7 0.9286 -3.4279 0.0167 25 1 -0.3633 0.0050 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6858 2.1378 0.0004 29 1 2.6696 3.6725 -0.0174 30 1 3.9696 5.7383 -0.0297 31 1 4.6496 7.8727 1.5982 32 1 6.2929 1.3670 -0.0077 33 1 5.3218 -0.1519 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242356867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = 23.521515 kcal Electronic energy + Delta-G solvation = -19958.989464 eV Core-core repulsion = 16670.357743 eV Total energy + Delta-G solvation = -3288.631720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.49968 -40.18564 -37.76269 -36.34016 -34.52178 -33.61705 -32.30807 -29.70174 -29.43552 -27.46318 -26.06701 -23.89445 -22.66022 -20.81586 -20.67011 -19.07018 -17.85218 -16.55831 -16.46914 -15.52096 -15.08142 -14.72493 -14.66154 -14.27394 -14.08316 -14.00951 -13.21050 -13.10045 -13.03338 -12.82096 -12.69697 -12.58739 -12.48888 -12.17896 -12.14793 -11.74514 -11.40179 -11.30113 -11.13637 -10.87045 -10.19343 -10.11250 -9.80170 -9.41962 -9.27814 -8.85212 -7.84758 -7.52510 -7.27308 -4.77601 0.64725 1.45625 2.27919 2.60109 2.69525 2.80201 2.82090 2.85549 3.21947 3.56066 3.81270 4.01301 4.32747 4.67723 4.88395 5.12429 5.15534 5.19028 5.44240 5.50416 5.52250 5.61655 5.74474 5.84831 6.03559 6.10619 6.28919 6.35713 6.55056 6.68446 6.79491 6.82564 7.13245 7.24159 7.52829 7.56998 7.62255 7.68674 8.05838 8.09273 8.21795 8.41339 9.58555 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.003698 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.913673 B = 7570.527698 C = 8327.534207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.117 4.117 4 C 0.016 3.984 5 C -0.200 4.200 6 C -0.069 4.069 7 C -0.159 4.159 8 C 0.096 3.904 9 C -0.416 4.416 10 H 0.092 0.908 11 C 0.071 3.929 12 N -0.758 5.758 13 Si 0.921 3.079 14 H -0.257 1.257 15 H -0.273 1.273 16 H -0.259 1.259 17 C -0.029 4.029 18 F -0.160 7.160 19 C -0.082 4.082 20 C 0.069 3.931 21 N -0.436 5.436 22 C 0.114 3.886 23 C 0.287 3.713 24 N -0.427 5.427 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.142 0.858 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.293 0.707 32 H 0.110 0.890 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 -0.699 -1.456 4.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.141 4.141 4 C 0.014 3.986 5 C -0.202 4.202 6 C -0.088 4.088 7 C -0.178 4.178 8 C 0.092 3.908 9 C -0.442 4.442 10 H 0.110 0.890 11 C -0.153 4.153 12 N -0.380 5.380 13 Si 0.743 3.257 14 H -0.182 1.182 15 H -0.197 1.197 16 H -0.183 1.183 17 C -0.049 4.049 18 F -0.139 7.139 19 C -0.101 4.101 20 C -0.094 4.094 21 N -0.144 5.144 22 C -0.023 4.023 23 C -0.029 4.029 24 N -0.104 5.104 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.053 -2.880 -1.280 5.955 hybrid contribution 0.428 1.914 -0.023 1.962 sum -4.625 -0.965 -1.303 4.901 Atomic orbital electron populations 1.20830 0.90310 1.03257 1.03006 1.20532 0.96838 0.92286 0.97237 1.21401 0.93303 0.97535 1.01903 1.20088 0.93141 0.94451 0.90957 1.17564 0.91255 0.90548 1.20821 1.20556 0.97995 0.91914 0.98330 1.20831 0.92804 0.97619 1.06540 1.17804 0.93022 0.90905 0.89067 1.19843 1.01308 0.92238 1.30812 0.88973 1.26156 0.94335 1.02334 0.92438 1.69757 1.17357 1.32046 1.18821 0.86119 0.80334 0.78742 0.80471 1.18150 1.19721 1.18331 1.17380 0.76209 0.94274 1.17041 1.91310 1.30098 1.97232 1.95308 1.20357 0.93300 0.96252 1.00192 1.22776 0.99993 0.86140 1.00444 1.67291 1.05778 1.32387 1.08979 1.16048 0.89143 0.86215 1.10853 1.25110 0.92688 0.91964 0.93143 1.81181 1.09768 1.09819 1.09674 0.90372 0.90412 0.91589 0.84022 0.88078 0.85432 0.89570 0.87228 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.61 36.00 0.35 -0.85 16 2 C -0.06 -0.86 5.92 -104.14 -0.62 -1.48 16 3 C -0.12 -1.66 9.20 -38.93 -0.36 -2.02 16 4 C 0.02 0.27 5.90 -104.65 -0.62 -0.35 16 5 C -0.20 -3.73 5.90 -104.66 -0.62 -4.35 16 6 C -0.07 -1.33 9.37 -39.63 -0.37 -1.70 16 7 C -0.16 -3.44 8.63 -39.29 -0.34 -3.78 16 8 C 0.10 2.24 5.58 -106.73 -0.60 1.64 16 9 C -0.42 -9.64 8.76 -37.90 -0.33 -9.97 16 10 H 0.09 2.10 7.73 -52.49 -0.41 1.69 16 11 C 0.07 1.51 5.13 -17.31 -0.09 1.42 16 12 N -0.76 -16.48 10.96 55.55 0.61 -15.87 16 13 Si 0.92 15.90 29.60 -169.99 -5.03 10.87 16 14 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 15 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 16 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 17 C -0.03 -0.65 7.26 -39.07 -0.28 -0.93 16 18 F -0.16 -3.61 16.70 2.25 0.04 -3.57 16 19 C -0.08 -1.61 9.34 -39.59 -0.37 -1.98 16 20 C 0.07 1.10 10.60 -17.14 -0.18 0.92 16 21 N -0.44 -7.15 10.26 -10.77 -0.11 -7.26 16 22 C 0.11 1.73 6.59 -84.93 -0.56 1.17 16 23 C 0.29 4.41 13.98 -22.47 -0.31 4.09 16 24 N -0.43 -6.93 18.54 41.84 0.78 -6.16 16 25 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.07 0.68 7.09 -51.93 -0.37 0.31 16 28 H 0.14 1.77 6.28 -52.49 -0.33 1.44 16 29 H 0.10 1.64 6.23 -52.49 -0.33 1.32 16 30 H 0.13 2.80 6.16 -52.49 -0.32 2.48 16 31 H 0.29 5.69 8.29 -40.82 -0.34 5.35 16 32 H 0.11 1.87 6.19 -52.49 -0.32 1.55 16 33 H 0.16 2.32 6.19 -52.49 -0.32 2.00 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -24.36 299.53 -6.88 -31.24 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.38 Total: 4.41 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -5.30 Total: -18.17 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 1.27 Total: -29.29 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 15.90 SS G_CDS: -5.03 Total: 10.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -24.36 -6.88 -31.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242356867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.765 kcal (2) G-P(sol) polarization free energy of solvation -24.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds