Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38106 * 120.39528 * 2 1 4 4 C 1.40120 * 118.38400 * 180.02562 * 3 2 1 5 5 C 1.47722 * 120.45563 * 179.97438 * 4 3 2 6 6 C 1.39144 * 120.26719 * 309.99578 * 5 4 3 7 7 C 1.38107 * 120.17190 * 180.02562 * 6 5 4 8 8 C 1.38829 * 120.73128 * 359.97438 * 7 6 5 9 9 C 1.37732 * 120.53843 * 0.02562 * 8 7 6 10 10 F 1.35104 * 120.09998 * 179.97438 * 9 8 7 11 11 C 1.41066 * 119.79933 * 359.72157 * 9 8 7 12 12 C 1.40716 * 120.35087 * 180.27438 * 11 9 8 13 13 H 1.08002 * 119.99424 * 136.36678 * 12 11 9 14 14 C 1.40141 * 120.00329 * 316.37332 * 12 11 9 15 15 N 1.30741 * 119.99979 * 160.73528 * 14 12 11 16 16 Si 1.86802 * 119.99778 * 340.73995 * 14 12 11 17 17 H 1.48501 * 109.47293 * 95.27510 * 16 14 12 18 18 H 1.48509 * 109.46638 * 215.27348 * 16 14 12 19 19 H 1.48500 * 109.47057 * 335.27001 * 16 14 12 20 20 C 1.39979 * 119.08541 * 359.97438 * 4 3 2 21 21 N 1.31297 * 120.70534 * 0.02562 * 20 4 3 22 22 C 1.32961 * 121.76887 * 0.02562 * 21 20 4 23 23 C 1.43199 * 119.57657 * 179.97438 * 22 21 20 24 24 N 3.47635 * 80.42013 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46763 * 90.00298 * 1 2 3 26 26 H 1.09002 * 109.47063 * 209.99833 * 1 2 3 27 27 H 1.08999 * 109.47397 * 329.99754 * 1 2 3 28 28 H 1.07997 * 120.80844 * 359.74876 * 3 2 1 29 29 H 1.08002 * 119.91599 * 359.97438 * 6 5 4 30 30 H 1.08004 * 119.63561 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.73308 * 179.97438 * 8 7 6 32 32 H 0.97001 * 120.00148 * 179.97438 * 15 14 12 33 33 H 1.08000 * 119.64544 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1912 0.0000 4 6 3.6061 1.1421 -0.0006 5 6 4.3991 2.3884 -0.0011 6 6 4.1235 3.3945 -0.9219 7 6 4.8665 4.5587 -0.9211 8 6 5.8944 4.7437 -0.0064 9 6 6.1926 3.7673 0.9181 10 9 7.1952 3.9564 1.8038 11 6 5.4447 2.5715 0.9409 12 6 5.7356 1.5686 1.8841 13 1 4.9329 1.0697 2.4067 14 6 7.0669 1.2175 2.1455 15 7 7.3720 0.5868 3.2494 16 14 8.4056 1.6506 0.9168 17 1 9.0440 2.9320 1.3114 18 1 9.4277 0.5734 0.8982 19 1 7.8093 1.7906 -0.4360 20 6 4.2432 -0.1043 -0.0005 21 7 3.5432 -1.2151 -0.0005 22 6 2.2136 -1.2046 -0.0010 23 6 1.4970 -2.4444 -0.0015 24 7 0.9285 -3.4279 -0.0015 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6856 2.1377 -0.0041 29 1 3.3271 3.2644 -1.6397 30 1 4.6449 5.3343 -1.6394 31 1 6.4654 5.6603 -0.0204 32 1 8.2934 0.3434 3.4302 33 1 5.3221 -0.1528 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242357023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = 35.785827 kcal Electronic energy + Delta-G solvation = -20835.805785 eV Core-core repulsion = 17547.705885 eV Total energy + Delta-G solvation = -3288.099900 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.84097 -40.13824 -37.80379 -36.26570 -33.92157 -33.48053 -32.67088 -30.55474 -28.87589 -27.39822 -25.63912 -24.29830 -22.23142 -21.23846 -20.42716 -18.95867 -18.01189 -16.48882 -16.45331 -15.79084 -15.03624 -14.57907 -14.56947 -14.53776 -14.21632 -14.08929 -13.14747 -13.09290 -12.98331 -12.92224 -12.62070 -12.57476 -12.47038 -12.20941 -11.96149 -11.72747 -11.64645 -11.24758 -10.92812 -10.46051 -10.36234 -9.90556 -9.52350 -9.29788 -9.24684 -8.66477 -7.78608 -7.68922 -7.11961 -4.74279 0.79351 1.55251 2.13057 2.23741 2.73703 3.08278 3.10527 3.14786 3.16149 3.84392 3.86388 4.15357 4.26890 4.74219 4.87594 4.92348 5.22858 5.34763 5.36906 5.53677 5.54706 5.62210 5.64528 5.82832 5.99808 6.03231 6.16313 6.27928 6.45721 6.56393 6.83560 6.93086 6.99219 7.16487 7.28352 7.37107 7.56186 7.71332 8.06300 8.17601 8.27913 8.47642 9.87420 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.006275 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.880677 B = 4460.856764 C = 5486.417940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.093 4.093 4 C 0.005 3.995 5 C -0.155 4.155 6 C -0.065 4.065 7 C -0.213 4.213 8 C -0.108 4.108 9 C -0.013 4.013 10 F -0.144 7.144 11 C 0.086 3.914 12 C -0.450 4.450 13 H 0.101 0.899 14 C 0.092 3.908 15 N -0.785 5.785 16 Si 0.900 3.100 17 H -0.257 1.257 18 H -0.287 1.287 19 H -0.248 1.248 20 C 0.130 3.870 21 N -0.449 5.449 22 C 0.143 3.857 23 C 0.285 3.715 24 N -0.421 5.421 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.289 0.711 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 4.376 -6.525 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.118 4.118 4 C 0.002 3.998 5 C -0.157 4.157 6 C -0.083 4.083 7 C -0.232 4.232 8 C -0.127 4.127 9 C -0.033 4.033 10 F -0.123 7.123 11 C 0.082 3.918 12 C -0.477 4.477 13 H 0.118 0.882 14 C -0.130 4.130 15 N -0.407 5.407 16 Si 0.724 3.276 17 H -0.181 1.181 18 H -0.214 1.214 19 H -0.171 1.171 20 C -0.031 4.031 21 N -0.157 5.157 22 C 0.007 3.993 23 C -0.031 4.031 24 N -0.098 5.098 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.125 1.872 -6.262 8.957 hybrid contribution 0.812 1.407 -0.055 1.626 sum -5.313 3.279 -6.317 8.881 Atomic orbital electron populations 1.20803 0.90241 1.03308 1.02813 1.20526 0.96884 0.92303 0.99098 1.21531 0.93237 0.97458 0.99618 1.19928 0.92549 0.94654 0.92713 1.18305 1.03782 0.93725 0.99917 1.20767 0.97806 0.92708 0.97061 1.20188 1.00656 0.99040 1.03292 1.20766 0.98560 0.97757 0.95634 1.17957 0.94545 0.96251 0.94533 1.91248 1.58250 1.95046 1.67746 1.17579 0.90736 0.91665 0.91836 1.19235 0.93944 1.17158 1.17408 0.88171 1.26136 0.99690 0.92340 0.94866 1.69633 1.22000 1.28063 1.20962 0.86586 0.80227 0.78775 0.81982 1.18123 1.21390 1.17081 1.23083 1.00650 0.85593 0.93814 1.67484 1.05349 1.32545 1.10363 1.16249 0.89452 0.86220 1.07391 1.25121 0.92656 0.92008 0.93323 1.81170 1.09882 1.09712 1.09055 0.90533 0.91595 0.90474 0.84163 0.87611 0.87405 0.87250 0.89976 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.62 36.01 0.35 -0.85 16 2 C -0.08 -1.16 5.92 -104.14 -0.62 -1.78 16 3 C -0.09 -1.36 9.34 -38.92 -0.36 -1.73 16 4 C 0.00 0.08 5.04 -104.66 -0.53 -0.45 16 5 C -0.16 -2.97 5.54 -104.28 -0.58 -3.55 16 6 C -0.07 -1.10 9.51 -39.29 -0.37 -1.47 16 7 C -0.21 -3.58 10.02 -39.41 -0.40 -3.97 16 8 C -0.11 -2.03 9.99 -39.55 -0.40 -2.42 16 9 C -0.01 -0.28 5.65 -38.70 -0.22 -0.50 16 10 F -0.14 -3.35 12.90 2.25 0.03 -3.32 16 11 C 0.09 1.90 4.68 -106.48 -0.50 1.40 16 12 C -0.45 -10.84 6.93 -37.93 -0.26 -11.11 16 13 H 0.10 2.58 7.79 -52.49 -0.41 2.17 16 14 C 0.09 2.24 4.98 -17.30 -0.09 2.16 16 15 N -0.78 -19.75 13.92 55.56 0.77 -18.97 16 16 Si 0.90 19.66 24.72 -169.99 -4.20 15.46 16 17 H -0.26 -5.68 6.29 56.52 0.36 -5.33 16 18 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.25 -5.34 7.11 56.52 0.40 -4.94 16 20 C 0.13 2.43 9.57 -17.13 -0.16 2.26 16 21 N -0.45 -8.27 10.26 -10.75 -0.11 -8.38 16 22 C 0.14 2.34 6.59 -84.92 -0.56 1.78 16 23 C 0.29 4.65 13.98 -22.48 -0.31 4.33 16 24 N -0.42 -7.18 18.54 41.84 0.78 -6.40 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.71 7.09 -51.93 -0.37 0.35 16 27 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.11 1.47 8.04 -52.49 -0.42 1.05 16 30 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 33 H 0.17 3.31 7.33 -52.49 -0.38 2.93 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -25.74 297.18 -6.14 -31.88 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -2.88 Total: 1.16 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -5.01 Total: -15.89 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 1.44 Total: -33.76 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.03 Total: -3.32 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.20 Total: 15.46 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.74 -6.14 -31.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242357023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.668 kcal (2) G-P(sol) polarization free energy of solvation -25.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds