Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.41477 * 2 1 4 4 C 1.39809 * 118.40636 * 180.02562 * 3 2 1 5 5 C 1.48250 * 120.42943 * 179.97438 * 4 3 2 6 6 C 1.38751 * 120.02298 * 129.71821 * 5 4 3 7 7 C 1.40536 * 119.64716 * 179.81549 * 6 5 4 8 8 C 1.41351 * 120.15011 * 180.20483 * 7 6 5 9 9 H 1.07997 * 119.99367 * 204.66395 * 8 7 6 10 10 C 1.39895 * 119.99926 * 24.66616 * 8 7 6 11 11 N 1.30861 * 120.00215 * 17.81411 * 10 8 7 12 12 Si 1.86804 * 119.99858 * 197.81508 * 10 8 7 13 13 H 1.48497 * 109.47075 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46949 * 120.00174 * 12 10 8 15 15 H 1.48499 * 109.46934 * 240.00189 * 12 10 8 16 16 C 1.40858 * 119.69432 * 0.42229 * 7 6 5 17 17 C 1.37555 * 120.04167 * 359.80755 * 16 7 6 18 18 C 1.38761 * 120.35451 * 0.02562 * 17 16 7 19 19 F 1.35105 * 119.84478 * 179.97438 * 18 17 16 20 20 C 1.39679 * 119.13928 * 359.97438 * 4 3 2 21 21 N 1.31364 * 120.74037 * 359.74112 * 20 4 3 22 22 C 1.32901 * 121.74791 * 0.52915 * 21 20 4 23 23 C 1.43201 * 119.61108 * 179.74717 * 22 21 20 24 24 N 3.47611 * 80.44235 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47620 * 269.98632 * 1 2 3 26 26 H 1.09009 * 109.46645 * 29.98149 * 1 2 3 27 27 H 1.08998 * 109.47267 * 149.98194 * 1 2 3 28 28 H 1.08004 * 120.79416 * 0.03710 * 3 2 1 29 29 H 1.07997 * 120.18018 * 0.02562 * 6 5 4 30 30 H 0.97001 * 120.00081 * 179.97438 * 11 10 8 31 31 H 1.07999 * 119.97799 * 179.79526 * 16 7 6 32 32 H 1.08000 * 119.82389 * 179.97438 * 17 16 7 33 33 H 1.08002 * 119.62387 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 6 3.6040 1.1430 -0.0005 5 6 4.3992 2.3942 -0.0011 6 6 5.4198 2.5686 0.9225 7 6 6.1712 3.7562 0.9123 8 6 7.2162 3.9431 1.8456 9 1 7.5236 4.9417 2.1190 10 6 7.8521 2.8348 2.4149 11 7 7.7427 1.6577 1.8536 12 14 8.8576 3.0350 3.9766 13 1 8.8236 4.4554 4.4084 14 1 8.2856 2.1789 5.0466 15 1 10.2623 2.6297 3.7162 16 6 5.8751 4.7611 -0.0292 17 6 4.8574 4.5769 -0.9360 18 6 4.1165 3.4037 -0.9299 19 9 3.1188 3.2338 -1.8249 20 6 4.2410 -0.1001 -0.0005 21 7 3.5424 -1.2125 0.0051 22 6 2.2134 -1.2037 0.0005 23 6 1.4976 -2.4440 0.0015 24 7 0.9298 -3.4279 0.0015 25 1 -0.3634 -0.0002 1.0276 26 1 -0.3633 0.8903 -0.5136 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6866 2.1386 0.0006 29 1 5.6380 1.7944 1.6432 30 1 8.1840 0.8893 2.2482 31 1 6.4475 5.6770 -0.0390 32 1 4.6331 5.3500 -1.6561 33 1 5.3200 -0.1471 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242358638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = 24.820664 kcal Electronic energy + Delta-G solvation = -20388.409039 eV Core-core repulsion = 17099.833654 eV Total energy + Delta-G solvation = -3288.575385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.70831 -40.27317 -37.63301 -36.44459 -33.97262 -33.66802 -32.77259 -29.60143 -29.01646 -27.57679 -25.28011 -24.38398 -22.67225 -21.19048 -20.41358 -19.14894 -17.58012 -16.63898 -16.37235 -15.59505 -15.07273 -14.84737 -14.67039 -14.48260 -14.29184 -13.56024 -13.20921 -13.07889 -13.04261 -12.93582 -12.65703 -12.56468 -12.51667 -12.14943 -12.11111 -11.70859 -11.42969 -11.24801 -10.96501 -10.70967 -10.13757 -9.98019 -9.61500 -9.43582 -9.28646 -8.83750 -7.72673 -7.54148 -7.03250 -4.61092 0.64223 1.36966 2.32332 2.54303 2.58929 2.93089 2.96902 3.01068 3.05253 3.66151 3.75447 4.01954 4.28505 4.63732 4.76746 5.04447 5.15514 5.27725 5.34865 5.47062 5.47685 5.55838 5.72799 5.88367 5.97464 6.14707 6.35992 6.44721 6.67099 6.74147 6.82700 6.94635 7.13103 7.40682 7.41781 7.50279 7.70759 7.87872 7.95575 8.26560 8.55987 8.59478 9.90993 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.005229 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.462854 B = 5353.538935 C = 6628.271174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.070 4.070 4 C -0.025 4.025 5 C -0.079 4.079 6 C -0.118 4.118 7 C 0.100 3.900 8 C -0.451 4.451 9 H 0.084 0.916 10 C 0.076 3.924 11 N -0.786 5.786 12 Si 0.910 3.090 13 H -0.259 1.259 14 H -0.270 1.270 15 H -0.272 1.272 16 C -0.195 4.195 17 C -0.115 4.115 18 C -0.029 4.029 19 F -0.167 7.167 20 C 0.115 3.885 21 N -0.447 5.447 22 C 0.155 3.845 23 C 0.283 3.717 24 N -0.413 5.413 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.145 0.855 29 H 0.133 0.867 30 H 0.286 0.714 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 0.757 -0.507 6.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.095 4.095 4 C -0.028 4.028 5 C -0.080 4.080 6 C -0.137 4.137 7 C 0.098 3.902 8 C -0.480 4.480 9 H 0.102 0.898 10 C -0.144 4.144 11 N -0.411 5.411 12 Si 0.734 3.266 13 H -0.182 1.182 14 H -0.195 1.195 15 H -0.198 1.198 16 C -0.215 4.215 17 C -0.134 4.134 18 C -0.049 4.049 19 F -0.147 7.147 20 C -0.045 4.045 21 N -0.155 5.155 22 C 0.018 3.982 23 C -0.034 4.034 24 N -0.090 5.090 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.151 0.849 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.578 -1.843 -0.509 6.850 hybrid contribution 0.334 1.193 0.457 1.320 sum -6.245 -0.650 -0.052 6.278 Atomic orbital electron populations 1.20826 0.89869 1.03467 1.03120 1.20611 0.97243 0.92147 0.98854 1.21561 0.93250 0.97807 0.96873 1.20207 0.93314 0.95008 0.94263 1.18306 0.98921 0.91440 0.99379 1.21377 0.93145 1.00250 0.98942 1.17577 0.91399 0.90721 0.90535 1.19642 1.14301 0.94177 1.19881 0.89794 1.25945 0.96025 0.94578 0.97816 1.69761 1.34772 1.00873 1.35684 0.86210 0.79292 0.80039 0.81048 1.18236 1.19486 1.19762 1.20947 1.00972 1.01367 0.98219 1.20471 0.97211 0.95420 1.00320 1.17175 0.94587 0.97186 0.95981 1.91300 1.59958 1.96103 1.67317 1.23096 1.00737 0.85534 0.95161 1.67485 1.05524 1.32254 1.10279 1.16256 0.89385 0.86351 1.06241 1.25045 0.92791 0.91975 0.93577 1.81187 1.09623 1.09638 1.08552 0.90253 0.90241 0.91449 0.83767 0.84949 0.90309 0.87686 0.87688 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.62 36.01 0.35 -0.86 16 2 C -0.08 -1.16 5.92 -104.13 -0.62 -1.78 16 3 C -0.07 -1.07 8.66 -39.00 -0.34 -1.41 16 4 C -0.03 -0.45 5.32 -104.66 -0.56 -1.00 16 5 C -0.08 -1.60 5.49 -104.91 -0.58 -2.18 16 6 C -0.12 -2.61 8.16 -38.53 -0.31 -2.93 16 7 C 0.10 2.32 5.57 -106.86 -0.60 1.72 16 8 C -0.45 -10.45 9.04 -37.78 -0.34 -10.79 16 9 H 0.08 1.87 7.91 -52.49 -0.41 1.45 16 10 C 0.08 1.67 5.13 -17.35 -0.09 1.58 16 11 N -0.79 -17.77 10.96 55.54 0.61 -17.16 16 12 Si 0.91 16.73 29.60 -169.99 -5.03 11.69 16 13 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 14 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 15 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 16 C -0.20 -4.14 9.78 -38.84 -0.38 -4.52 16 17 C -0.12 -2.31 9.99 -39.64 -0.40 -2.71 16 18 C -0.03 -0.60 7.20 -38.71 -0.28 -0.88 16 19 F -0.17 -3.28 15.92 2.25 0.04 -3.25 16 20 C 0.12 2.01 10.68 -17.21 -0.18 1.83 16 21 N -0.45 -7.66 10.26 -10.85 -0.11 -7.78 16 22 C 0.15 2.41 6.59 -84.98 -0.56 1.85 16 23 C 0.28 4.34 13.99 -22.48 -0.31 4.02 16 24 N -0.41 -6.65 18.54 41.83 0.78 -5.88 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.71 8.09 -51.92 -0.42 0.29 16 27 H 0.07 0.69 7.09 -51.93 -0.37 0.32 16 28 H 0.14 2.04 7.85 -52.48 -0.41 1.63 16 29 H 0.13 3.02 6.15 -52.49 -0.32 2.70 16 30 H 0.29 5.89 8.30 -40.82 -0.34 5.56 16 31 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.18 3.03 8.04 -52.49 -0.42 2.61 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -24.27 305.42 -7.08 -31.34 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -2.76 Total: 4.46 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -5.19 Total: -18.05 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 1.27 Total: -30.81 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.27 -7.08 -31.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242358638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.166 kcal (2) G-P(sol) polarization free energy of solvation -24.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds