Wall clock time and date at job start Tue Mar 31 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86802 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47149 * 275.41440 * 3 2 1 5 5 H 1.48498 * 109.47157 * 35.41125 * 3 2 1 6 6 H 1.48502 * 109.47179 * 155.41389 * 3 2 1 7 7 C 1.39981 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99376 * 341.73048 * 7 2 1 9 9 C 1.40992 * 120.00312 * 161.72758 * 7 2 1 10 10 C 1.40953 * 120.11292 * 330.11187 * 9 7 2 11 11 C 1.36209 * 119.88441 * 179.97438 * 10 9 7 12 12 C 1.40009 * 120.11585 * 359.97438 * 11 10 9 13 13 C 1.47862 * 119.88691 * 179.97438 * 12 11 10 14 14 C 1.39682 * 120.12643 * 310.02349 * 13 12 11 15 15 C 1.37835 * 119.94589 * 179.68850 * 14 13 12 16 16 C 1.38451 * 120.30149 * 0.60129 * 15 14 13 17 17 C 1.38729 * 120.38759 * 359.47657 * 16 15 14 18 18 C 1.38831 * 119.91043 * 0.12637 * 17 16 15 19 19 O 1.35955 * 120.87232 * 180.24584 * 18 17 16 20 20 C 1.43180 * 116.71072 * 342.62247 * 19 18 17 21 21 C 1.53484 * 108.21602 * 46.23335 * 20 19 18 22 22 O 1.36142 * 119.34866 * 179.87458 * 17 16 15 23 23 C 1.40002 * 120.22387 * 0.25900 * 12 11 10 24 24 C 1.36216 * 120.11864 * 359.47538 * 23 12 11 25 25 H 0.97000 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.05643 * 359.95653 * 10 9 7 27 27 H 1.07999 * 119.94514 * 180.02562 * 11 10 9 28 28 H 1.07999 * 120.02353 * 359.96314 * 14 13 12 29 29 H 1.07997 * 119.84602 * 180.32376 * 15 14 13 30 30 H 1.08004 * 119.80125 * 179.75763 * 16 15 14 31 31 H 1.08993 * 109.71840 * 165.91613 * 20 19 18 32 32 H 1.09005 * 109.71181 * 286.55416 * 20 19 18 33 33 H 1.08996 * 109.70694 * 60.03367 * 21 20 19 34 34 H 1.09002 * 109.70523 * 180.61173 * 21 20 19 35 35 H 1.07997 * 119.93544 * 179.72558 * 23 12 11 36 36 H 1.07999 * 120.06186 * 180.23146 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3752 2.1125 -1.3938 5 1 1.5014 2.6170 0.8112 6 1 3.5922 1.4099 0.5825 7 6 2.0081 -1.2122 0.0005 8 1 1.5089 -2.1238 0.2942 9 6 3.3647 -1.2432 -0.3823 10 6 3.8571 -0.3105 -1.3174 11 6 5.1686 -0.3443 -1.6835 12 6 6.0273 -1.3029 -1.1323 13 6 7.4500 -1.3354 -1.5338 14 6 7.7970 -1.3289 -2.8868 15 6 9.1246 -1.3528 -3.2568 16 6 10.1177 -1.3957 -2.2931 17 6 9.7880 -1.4043 -0.9455 18 6 8.4550 -1.3723 -0.5588 19 8 8.1100 -1.3749 0.7563 20 6 9.1167 -1.7923 1.6849 21 6 10.4281 -1.0822 1.3221 22 8 10.7815 -1.4493 -0.0158 23 6 5.5422 -2.2347 -0.2068 24 6 4.2335 -2.2059 0.1701 25 1 -0.4850 0.8400 -0.0004 26 1 3.1955 0.4294 -1.7430 27 1 5.5470 0.3701 -2.3996 28 1 7.0258 -1.3008 -3.6423 29 1 9.3911 -1.3424 -4.3033 30 1 11.1552 -1.4181 -2.5921 31 1 8.8188 -1.5196 2.6973 32 1 9.2526 -2.8718 1.6193 33 1 10.2906 -0.0027 1.3829 34 1 11.2158 -1.3916 2.0091 35 1 6.2077 -2.9749 0.2121 36 1 3.8611 -2.9228 0.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242467628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:42 Heat of formation + Delta-G solvation = -31.400650 kcal Electronic energy + Delta-G solvation = -21269.241166 eV Core-core repulsion = 18069.395396 eV Total energy + Delta-G solvation = -3199.845770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00422 -38.23170 -37.10843 -36.87815 -33.77434 -31.66813 -31.07956 -29.85552 -29.02898 -28.19349 -25.24216 -24.52632 -22.24691 -21.51571 -20.64641 -20.07779 -18.36297 -17.50790 -17.16984 -16.88916 -15.64124 -15.26323 -15.00271 -14.54115 -14.35787 -14.08579 -14.00477 -13.73862 -13.58441 -12.93451 -12.67770 -12.44507 -12.29611 -12.01906 -11.61916 -11.39397 -11.07614 -10.96234 -10.81242 -10.76397 -10.38727 -10.20508 -9.81649 -9.57467 -9.21723 -8.35960 -7.85233 -7.79037 -7.27809 -7.03835 -4.51343 1.45753 1.60957 2.59413 2.78188 3.08853 3.17734 3.20320 3.30921 3.44360 3.94679 4.01091 4.31265 4.48595 4.81384 4.85650 4.91592 5.22173 5.27918 5.42310 5.45771 5.57167 5.60320 5.73096 6.02778 6.09263 6.17204 6.38924 6.47443 6.57679 6.74203 6.82250 6.88617 6.93331 7.13341 7.15388 7.44480 7.56504 7.73883 7.80647 7.86492 8.09634 8.28893 8.62344 8.73770 9.97541 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.004787 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.117654 B = 5848.192180 C = 6238.658377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.438 4.438 8 H 0.092 0.908 9 C 0.100 3.900 10 C -0.244 4.244 11 C -0.050 4.050 12 C -0.196 4.196 13 C 0.017 3.983 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.046 3.954 18 C 0.042 3.958 19 O -0.288 6.288 20 C 0.018 3.982 21 C 0.021 3.979 22 O -0.313 6.313 23 C -0.040 4.040 24 C -0.215 4.215 25 H 0.287 0.713 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.481 -0.467 -0.016 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.466 4.466 8 H 0.110 0.890 9 C 0.096 3.904 10 C -0.263 4.263 11 C -0.068 4.068 12 C -0.197 4.197 13 C 0.016 3.984 14 C -0.142 4.142 15 C -0.132 4.132 16 C -0.159 4.159 17 C 0.002 3.998 18 C -0.003 4.003 19 O -0.202 6.202 20 C -0.058 4.058 21 C -0.054 4.054 22 O -0.228 6.228 23 C -0.059 4.059 24 C -0.234 4.234 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.190 -0.382 0.077 16.194 hybrid contribution 0.284 0.750 0.261 0.844 sum 16.474 0.368 0.338 16.482 Atomic orbital electron populations 1.69691 1.08206 1.30518 1.34057 1.26232 0.94715 1.01969 0.90684 0.86287 0.81432 0.79448 0.78969 1.19517 1.21796 1.16521 1.19542 0.93357 0.96140 1.37552 0.89005 1.17788 0.92841 0.90679 0.89046 1.20683 0.95609 1.05258 1.04711 1.20362 0.93193 0.96083 0.97184 1.17826 0.90180 1.03734 1.07978 1.18367 0.92190 0.97424 0.90429 1.21138 0.96056 1.02429 0.94606 1.20750 0.92277 1.01484 0.98669 1.20257 0.99966 1.06553 0.89092 1.18794 0.85973 1.05147 0.89880 1.19052 0.91237 1.05724 0.84333 1.86464 1.37774 1.82992 1.12957 1.23575 0.88451 0.99520 0.94282 1.23567 0.98657 1.00306 0.82899 1.86253 1.34257 1.84653 1.17659 1.20326 0.94915 0.96123 0.94509 1.20688 0.93227 1.04521 1.04968 0.90266 0.88159 0.88776 0.85281 0.85666 0.85699 0.86455 0.90943 0.90790 0.86623 0.88988 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.05 13.93 55.55 0.77 -20.28 16 2 C 0.08 2.18 5.40 -17.33 -0.09 2.09 16 3 Si 0.91 20.82 24.51 -169.99 -4.17 16.65 16 4 H -0.27 -5.95 6.70 56.52 0.38 -5.57 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.24 -5.75 6.87 56.52 0.39 -5.36 16 7 C -0.44 -11.76 9.55 -37.89 -0.36 -12.12 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.10 2.53 5.10 -106.80 -0.55 1.99 16 10 C -0.24 -5.90 7.10 -39.28 -0.28 -6.18 16 11 C -0.05 -1.11 9.43 -39.65 -0.37 -1.48 16 12 C -0.20 -4.22 5.28 -104.63 -0.55 -4.77 16 13 C 0.02 0.31 5.48 -104.73 -0.57 -0.26 16 14 C -0.12 -2.00 9.50 -39.19 -0.37 -2.38 16 15 C -0.11 -1.56 10.02 -39.65 -0.40 -1.96 16 16 C -0.14 -2.00 9.95 -39.32 -0.39 -2.39 16 17 C 0.05 0.74 6.49 -39.18 -0.25 0.49 16 18 C 0.04 0.74 6.41 -38.67 -0.25 0.50 16 19 O -0.29 -5.04 8.69 -32.45 -0.28 -5.32 16 20 C 0.02 0.22 7.26 37.41 0.27 0.49 16 21 C 0.02 0.23 7.26 37.41 0.27 0.51 16 22 O -0.31 -4.48 10.42 -33.05 -0.34 -4.82 16 23 C -0.04 -0.89 8.68 -39.65 -0.34 -1.23 16 24 C -0.21 -5.07 9.73 -39.28 -0.38 -5.45 16 25 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.10 2.41 4.73 -52.49 -0.25 2.16 16 27 H 0.09 1.86 8.03 -52.49 -0.42 1.43 16 28 H 0.13 1.94 8.04 -52.49 -0.42 1.52 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.87 7.67 -52.49 -0.40 1.46 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -29.29 302.44 -8.13 -37.43 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.05 Total: 3.94 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -4.63 Total: -32.16 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.77 Total: -20.28 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.63 Total: -10.14 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.29 -8.13 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242467628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.026 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds