Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48504 * 109.46813 * 270.00126 * 3 2 1 5 5 H 1.48496 * 109.47077 * 29.99717 * 3 2 1 6 6 H 1.48496 * 109.47178 * 150.00091 * 3 2 1 7 7 C 1.40050 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 195.50039 * 7 2 1 9 9 C 1.40844 * 119.99725 * 15.49984 * 7 2 1 10 10 C 1.40763 * 120.33713 * 25.27310 * 9 7 2 11 11 C 1.36415 * 119.98937 * 179.72111 * 10 9 7 12 12 C 1.38955 * 120.70213 * 0.30006 * 11 10 9 13 13 C 1.38033 * 120.68323 * 359.97438 * 12 11 10 14 14 C 1.39234 * 119.97950 * 359.97438 * 13 12 11 15 15 C 1.47752 * 120.34046 * 180.02562 * 14 13 12 16 16 C 1.39719 * 120.13316 * 64.72537 * 15 14 13 17 17 C 1.37822 * 119.94722 * 179.77013 * 16 15 14 18 18 C 1.38452 * 120.30382 * 0.57455 * 17 16 15 19 19 C 1.38741 * 120.39946 * 359.73691 * 18 17 16 20 20 C 1.38831 * 119.91093 * 359.87660 * 19 18 17 21 21 O 1.35953 * 120.86472 * 180.42636 * 20 19 18 22 22 C 1.43169 * 116.73887 * 342.68139 * 21 20 19 23 23 C 1.53472 * 108.24252 * 46.13281 * 22 21 20 24 24 O 1.36135 * 119.34993 * 179.70707 * 19 18 17 25 25 H 0.96995 * 119.99942 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00137 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.64484 * 180.27987 * 11 10 9 28 28 H 1.08001 * 119.65940 * 179.97438 * 12 11 10 29 29 H 1.08004 * 120.01042 * 179.97438 * 13 12 11 30 30 H 1.08004 * 120.02287 * 0.02562 * 16 15 14 31 31 H 1.07996 * 119.84672 * 180.32813 * 17 16 15 32 32 H 1.07999 * 119.79962 * 179.70546 * 18 17 16 33 33 H 1.09004 * 109.71202 * 286.44761 * 22 21 20 34 34 H 1.08998 * 109.71402 * 165.82301 * 22 21 20 35 35 H 1.08995 * 109.71596 * 180.68336 * 23 22 21 36 36 H 1.08998 * 109.74510 * 60.06426 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4894 2.0464 -1.4001 5 1 1.4394 2.6527 0.7000 6 1 3.5395 1.4402 0.7000 7 6 2.0082 -1.2129 0.0005 8 1 3.0587 -1.2298 0.2505 9 6 1.3424 -2.4105 -0.3249 10 6 0.1922 -2.3868 -1.1360 11 6 -0.4438 -3.5516 -1.4515 12 6 0.0274 -4.7689 -0.9750 13 6 1.1494 -4.8246 -0.1729 14 6 1.8213 -3.6531 0.1659 15 6 3.0234 -3.7035 1.0234 16 6 4.1801 -4.3447 0.5728 17 6 5.3008 -4.3853 1.3740 18 6 5.2830 -3.8034 2.6302 19 6 4.1396 -3.1689 3.0938 20 6 3.0061 -3.1134 2.2942 21 8 1.8781 -2.4892 2.7256 22 6 1.7765 -2.2419 4.1321 23 6 3.1111 -1.6578 4.6149 24 8 4.1438 -2.6092 4.3348 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1838 -1.4470 -1.5126 27 1 -1.3232 -3.5274 -2.0780 28 1 -0.4895 -5.6809 -1.2349 29 1 1.5061 -5.7766 0.1917 30 1 4.1973 -4.8045 -0.4043 31 1 6.1957 -4.8767 1.0219 32 1 6.1643 -3.8442 3.2531 33 1 1.5732 -3.1761 4.6558 34 1 0.9732 -1.5304 4.3233 35 1 3.0642 -1.4714 5.6877 36 1 3.3171 -0.7260 4.0884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242471042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -27.662239 kcal Electronic energy + Delta-G solvation = -22158.936647 eV Core-core repulsion = 18959.252987 eV Total energy + Delta-G solvation = -3199.683660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61447 -37.90723 -36.68681 -36.42548 -33.65007 -31.42162 -30.70049 -29.50180 -27.99165 -27.80301 -25.25358 -24.16439 -22.48778 -20.89533 -20.31060 -19.78505 -17.95211 -17.23443 -16.77410 -16.44074 -15.38224 -14.87031 -14.69743 -14.38198 -14.13357 -13.84126 -13.64148 -13.46600 -13.25763 -12.67502 -12.51307 -12.26219 -11.64811 -11.39379 -11.31787 -11.13474 -11.08015 -10.74324 -10.60530 -10.50682 -10.42180 -10.00556 -9.61715 -9.31905 -9.17641 -7.93826 -7.47210 -7.34712 -7.16175 -6.72700 -4.30813 1.86593 1.98134 2.78585 3.02524 3.05434 3.09141 3.26105 3.54138 3.87179 3.92285 4.35893 4.66595 4.68875 5.16507 5.20511 5.25043 5.52797 5.59241 5.71388 5.80891 5.90484 5.96016 6.03391 6.26085 6.38992 6.54295 6.62352 6.79062 6.92431 7.04579 7.11073 7.24402 7.27761 7.40619 7.54404 7.62269 7.92369 8.03356 8.13282 8.18103 8.31107 8.64803 8.90264 9.00527 10.18149 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.009235 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.241947 B = 3031.074581 C = 4138.720720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.079 3.921 3 Si 0.900 3.100 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.433 4.433 8 H 0.074 0.926 9 C 0.138 3.862 10 C -0.161 4.161 11 C -0.102 4.102 12 C -0.247 4.247 13 C -0.071 4.071 14 C -0.180 4.180 15 C 0.025 3.975 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.034 3.966 20 C 0.071 3.929 21 O -0.263 6.263 22 C 0.018 3.982 23 C 0.022 3.978 24 O -0.316 6.316 25 H 0.279 0.721 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -2.037 5.794 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.462 4.462 8 H 0.092 0.908 9 C 0.135 3.865 10 C -0.180 4.180 11 C -0.121 4.121 12 C -0.267 4.267 13 C -0.089 4.089 14 C -0.182 4.182 15 C 0.024 3.976 16 C -0.140 4.140 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.011 4.011 20 C 0.025 3.975 21 O -0.176 6.176 22 C -0.059 4.059 23 C -0.054 4.054 24 O -0.231 6.231 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.659 -1.821 5.859 7.704 hybrid contribution 0.167 0.985 0.295 1.042 sum 4.826 -0.836 6.154 7.865 Atomic orbital electron populations 1.69813 1.07465 1.28972 1.35019 1.25872 0.94636 1.01024 0.92347 0.86435 0.80658 0.80974 0.79480 1.19169 1.20288 1.18660 1.19399 0.97106 0.90716 1.38978 0.90781 1.17448 0.90452 0.90880 0.87689 1.21080 0.98866 0.96961 1.01122 1.20454 0.98478 0.93434 0.99719 1.20212 1.01371 0.96196 1.08872 1.20493 0.95495 0.95383 0.97523 1.18336 0.99338 0.94027 1.06476 1.18178 0.94567 0.94118 0.90728 1.21105 0.91850 1.01183 0.99849 1.20648 0.98422 1.01604 0.93643 1.20199 0.95667 1.02923 0.96744 1.18812 0.94284 1.01531 0.86434 1.19129 0.85347 0.98222 0.94773 1.86669 1.36093 1.73320 1.21491 1.23517 0.98198 1.01521 0.82649 1.23545 0.87660 0.91747 1.02468 1.86214 1.51238 1.56397 1.29247 0.90995 0.86257 0.89685 0.89609 0.89448 0.85749 0.86068 0.86061 0.91510 0.86817 0.87024 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.00 10.87 55.55 0.60 -19.40 16 2 C 0.08 1.97 5.18 -17.32 -0.09 1.88 16 3 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.43 -11.36 7.35 -37.92 -0.28 -11.64 16 8 H 0.07 1.98 7.10 -52.49 -0.37 1.60 16 9 C 0.14 3.64 5.39 -106.55 -0.57 3.07 16 10 C -0.16 -4.19 8.63 -39.29 -0.34 -4.53 16 11 C -0.10 -2.43 9.96 -39.97 -0.40 -2.83 16 12 C -0.25 -5.63 10.03 -39.39 -0.40 -6.03 16 13 C -0.07 -1.63 9.73 -39.29 -0.38 -2.01 16 14 C -0.18 -4.41 4.96 -104.23 -0.52 -4.93 16 15 C 0.02 0.55 4.39 -104.75 -0.46 0.09 16 16 C -0.12 -2.31 9.74 -39.18 -0.38 -2.70 16 17 C -0.12 -2.06 10.02 -39.65 -0.40 -2.46 16 18 C -0.14 -2.35 9.95 -39.32 -0.39 -2.75 16 19 C 0.03 0.65 6.49 -39.18 -0.25 0.40 16 20 C 0.07 1.55 5.81 -38.66 -0.22 1.32 16 21 O -0.26 -5.85 8.89 -32.46 -0.29 -6.14 16 22 C 0.02 0.29 7.26 37.40 0.27 0.56 16 23 C 0.02 0.32 7.26 37.40 0.27 0.59 16 24 O -0.32 -5.57 10.42 -33.04 -0.34 -5.92 16 25 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 26 H 0.12 3.18 6.12 -52.49 -0.32 2.85 16 27 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -29.20 305.68 -9.05 -38.25 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.06 Total: 6.78 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -4.54 Total: -31.95 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.60 Total: -19.40 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.63 Total: -12.06 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.20 -9.05 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242471042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.588 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds