Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38055 * 119.85872 * 2 1 4 4 C 1.39676 * 120.09005 * 180.02562 * 3 2 1 5 5 C 1.43204 * 120.08682 * 179.97438 * 4 3 2 6 6 N 4.80332 * 134.43019 * 359.97438 * 2 1 3 7 7 C 1.39460 * 119.81638 * 359.68572 * 4 3 2 8 8 C 1.39056 * 119.72039 * 0.60945 * 7 4 3 9 9 C 1.48401 * 120.04350 * 179.68759 * 8 7 4 10 10 C 1.39002 * 120.41489 * 309.72058 * 9 8 7 11 11 C 1.40966 * 118.12530 * 180.02562 * 10 9 8 12 12 C 1.41376 * 120.57046 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99656 * 155.74248 * 12 11 10 14 14 C 1.39897 * 120.00404 * 335.74688 * 12 11 10 15 15 N 1.30863 * 119.99730 * 343.51311 * 14 12 11 16 16 Si 1.86802 * 120.00315 * 163.50892 * 14 12 11 17 17 H 1.48498 * 109.46674 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47108 * 120.00013 * 16 14 12 19 19 H 1.48502 * 109.47167 * 240.00130 * 16 14 12 20 20 C 1.40796 * 118.85451 * 0.02562 * 11 10 9 21 21 N 1.31509 * 120.69562 * 0.27753 * 20 11 10 22 22 C 1.32163 * 122.07383 * 359.43320 * 21 20 11 23 23 F 1.35097 * 119.46007 * 180.29646 * 22 21 20 24 24 C 1.38125 * 119.86128 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47028 * 269.97346 * 1 2 3 26 26 H 1.08993 * 109.47535 * 29.97938 * 1 2 3 27 27 H 1.09007 * 109.47237 * 149.97900 * 1 2 3 28 28 H 1.07992 * 119.95097 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.13533 * 180.29509 * 7 4 3 30 30 H 1.07994 * 120.94126 * 0.05163 * 10 9 8 31 31 H 0.97003 * 119.99657 * 179.97438 * 15 14 12 32 32 H 1.07994 * 119.65194 * 180.02562 * 20 11 10 33 33 H 1.08000 * 119.90668 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.1973 0.0000 4 6 3.5910 1.2029 -0.0005 5 6 4.3039 2.4449 -0.0011 6 7 4.8695 3.4301 -0.0015 7 6 4.2893 -0.0042 0.0056 8 6 3.5892 -1.2057 -0.0007 9 6 4.3251 -2.4944 -0.0013 10 6 5.3431 -2.7231 -0.9198 11 6 6.0097 -3.9644 -0.8775 12 6 7.0525 -4.2519 -1.7878 13 1 7.8034 -4.9856 -1.5345 14 6 7.1118 -3.5859 -3.0167 15 7 6.0604 -2.9510 -3.4682 16 14 8.6919 -3.6028 -4.0130 17 1 9.7260 -4.3837 -3.2877 18 1 8.4364 -4.2273 -5.3357 19 1 9.1696 -2.2101 -4.2071 20 6 5.6184 -4.9134 0.0861 21 7 4.6444 -4.6509 0.9299 22 6 4.0015 -3.4962 0.9224 23 9 3.0128 -3.2804 1.8174 24 6 2.1947 -1.1979 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6512 2.1307 -0.0004 29 1 5.3693 -0.0059 0.0100 30 1 5.6159 -1.9708 -1.6450 31 1 6.1017 -2.4889 -4.3201 32 1 6.1206 -5.8684 0.1302 33 1 1.6509 -2.1310 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242479850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = 21.641586 kcal Electronic energy + Delta-G solvation = -20402.469225 eV Core-core repulsion = 17113.755985 eV Total energy + Delta-G solvation = -3288.713240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.67160 -39.54927 -38.21953 -36.38491 -34.28071 -33.37988 -32.14550 -30.50879 -28.88357 -26.90550 -25.62049 -23.78820 -23.09480 -21.71423 -20.29094 -18.26865 -17.22543 -16.69351 -16.19229 -16.04872 -15.41817 -15.14655 -14.59416 -14.30396 -14.06118 -13.51903 -13.33106 -13.15188 -12.93868 -12.82705 -12.55633 -12.39717 -12.19488 -12.06583 -11.86624 -11.69362 -11.47235 -11.35727 -11.18402 -11.11006 -10.75103 -10.18886 -9.58732 -9.14540 -8.61021 -8.53493 -8.16974 -7.63263 -7.10427 -4.71730 0.92864 1.33504 2.25133 2.56603 2.74151 2.91732 2.94593 2.97561 3.11592 3.68855 3.96348 4.00005 4.28653 4.86390 4.88522 5.03930 5.16822 5.25503 5.38613 5.43315 5.57868 5.62838 5.81937 5.96664 5.97807 6.18336 6.34799 6.42061 6.48028 6.56403 6.77331 6.81256 6.89166 6.98666 7.33809 7.52133 7.55503 7.66268 8.11731 8.37195 8.39827 9.12102 9.81093 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.005858 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.907921 B = 4778.907048 C = 6050.238073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.082 4.082 4 C -0.033 4.033 5 C 0.266 3.734 6 N -0.432 5.432 7 C -0.062 4.062 8 C -0.007 4.007 9 C -0.107 4.107 10 C -0.095 4.095 11 C 0.054 3.946 12 C -0.437 4.437 13 H 0.089 0.911 14 C 0.072 3.928 15 N -0.782 5.782 16 Si 0.915 3.085 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.269 1.269 20 C 0.013 3.987 21 N -0.488 5.488 22 C 0.164 3.836 23 F -0.144 7.144 24 C -0.070 4.070 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.288 0.712 32 H 0.139 0.861 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 4.292 0.985 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.102 4.102 4 C -0.036 4.036 5 C -0.049 4.049 6 N -0.107 5.107 7 C -0.083 4.083 8 C -0.008 4.008 9 C -0.111 4.111 10 C -0.120 4.120 11 C 0.049 3.951 12 C -0.466 4.466 13 H 0.108 0.892 14 C -0.148 4.148 15 N -0.406 5.406 16 Si 0.738 3.262 17 H -0.180 1.180 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.148 4.148 21 N -0.200 5.200 22 C 0.010 3.990 23 F -0.124 7.124 24 C -0.089 4.089 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.500 5.358 1.414 7.807 hybrid contribution 0.536 0.212 -1.043 1.192 sum -4.964 5.570 0.370 7.470 Atomic orbital electron populations 1.20772 0.90621 1.02916 1.02494 1.19674 0.96271 0.92288 1.00748 1.20908 0.91610 0.98157 0.99541 1.15832 0.92256 0.86603 1.08947 1.25747 0.93184 0.92802 0.93185 1.81200 1.08569 1.11323 1.09651 1.21257 1.00255 0.89802 0.96951 1.18633 0.92675 0.92183 0.97318 1.19061 1.00299 0.92604 0.99099 1.21761 0.95030 0.97765 0.97444 1.18496 0.92787 0.90975 0.92798 1.19622 1.08593 1.19485 0.98918 0.89247 1.26026 0.97681 0.92971 0.98080 1.69765 1.28439 1.23636 1.18772 0.86126 0.81324 0.79383 0.79323 1.18018 1.19628 1.19416 1.22322 0.96537 0.99172 0.96812 1.66294 1.08574 1.19595 1.25494 1.17475 0.94385 0.92849 0.94248 1.91405 1.59325 1.94540 1.67159 1.21391 0.93309 0.97939 0.96261 0.91009 0.91535 0.91201 0.85472 0.84911 0.84171 0.90125 0.84323 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.00 36.00 0.36 -0.69 16 2 C -0.09 -1.14 5.87 -104.73 -0.61 -1.76 16 3 C -0.08 -1.01 9.39 -39.11 -0.37 -1.38 16 4 C -0.03 -0.47 5.73 -106.98 -0.61 -1.08 16 5 C 0.27 3.99 15.32 -22.47 -0.34 3.64 16 6 N -0.43 -7.15 18.54 41.84 0.78 -6.38 16 7 C -0.06 -1.01 9.24 -38.82 -0.36 -1.37 16 8 C -0.01 -0.13 5.32 -104.95 -0.56 -0.69 16 9 C -0.11 -2.28 5.48 -104.75 -0.57 -2.85 16 10 C -0.09 -2.16 8.28 -38.27 -0.32 -2.48 16 11 C 0.05 1.28 5.59 -106.70 -0.60 0.68 16 12 C -0.44 -10.06 9.08 -37.77 -0.34 -10.40 16 13 H 0.09 1.94 7.90 -52.49 -0.41 1.53 16 14 C 0.07 1.59 5.19 -17.34 -0.09 1.50 16 15 N -0.78 -17.78 10.90 55.54 0.61 -17.17 16 16 Si 0.91 16.57 29.59 -169.99 -5.03 11.54 16 17 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 18 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 20 C 0.01 0.30 10.96 -16.72 -0.18 0.12 16 21 N -0.49 -11.53 10.34 -12.59 -0.13 -11.66 16 22 C 0.16 3.73 8.30 -16.73 -0.14 3.59 16 23 F -0.14 -3.10 15.90 2.25 0.04 -3.06 16 24 C -0.07 -1.10 8.51 -39.17 -0.33 -1.43 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.13 2.13 8.05 -52.49 -0.42 1.71 16 30 H 0.14 3.24 6.20 -52.49 -0.33 2.92 16 31 H 0.29 5.94 8.30 -40.82 -0.34 5.61 16 32 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.13 2.02 7.78 -52.49 -0.41 1.61 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -25.74 307.47 -6.99 -32.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.81 Total: 3.98 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -5.07 Total: -14.61 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 1.25 Total: -35.22 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.03 Total: 11.54 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.74 -6.99 -32.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242479850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.375 kcal (2) G-P(sol) polarization free energy of solvation -25.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds