Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31206 * 119.79867 * 2 1 4 4 C 1.33117 * 121.72054 * 179.97438 * 3 2 1 5 5 C 1.47698 * 119.45746 * 180.02562 * 4 3 2 6 6 C 1.39515 * 120.19761 * 180.02562 * 5 4 3 7 7 C 1.37886 * 120.02490 * 179.97438 * 6 5 4 8 8 C 1.38827 * 120.44113 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.79317 * 179.97438 * 8 7 6 10 10 C 1.38257 * 120.40476 * 0.02562 * 8 7 6 11 11 C 1.39428 * 119.96294 * 359.74335 * 10 8 7 12 12 C 1.43202 * 120.21954 * 180.27501 * 11 10 8 13 13 N 3.65202 * 79.69118 * 359.75396 * 2 1 3 14 14 C 1.40016 * 121.08322 * 0.03940 * 4 3 2 15 15 C 1.36552 * 119.46538 * 359.97438 * 14 4 3 16 16 C 1.41018 * 119.79695 * 180.02562 * 2 1 3 17 17 C 1.40973 * 120.54104 * 0.27474 * 16 2 1 18 18 H 1.07999 * 120.00238 * 334.45317 * 17 16 2 19 19 C 1.40072 * 119.99530 * 154.45674 * 17 16 2 20 20 N 1.30763 * 120.00486 * 343.76464 * 19 17 16 21 21 Si 1.86804 * 119.99590 * 163.76485 * 19 17 16 22 22 H 1.48495 * 109.47155 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47181 * 120.00107 * 21 19 17 24 24 H 1.48503 * 109.46897 * 239.99495 * 21 19 17 25 25 H 1.09001 * 109.47377 * 269.98228 * 1 2 3 26 26 H 1.09003 * 109.47176 * 29.97775 * 1 2 3 27 27 H 1.09000 * 109.47106 * 149.98202 * 1 2 3 28 28 H 1.07999 * 119.98351 * 359.97438 * 6 5 4 29 29 H 1.07993 * 119.77396 * 180.02562 * 7 6 5 30 30 H 1.08002 * 120.02025 * 180.02562 * 10 8 7 31 31 H 1.08002 * 120.26239 * 180.02562 * 14 4 3 32 32 H 1.07992 * 120.79549 * 179.97438 * 15 14 4 33 33 H 0.96996 * 120.00403 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1590 1.1386 0.0000 4 6 3.4894 1.1832 0.0005 5 6 4.1722 2.4929 0.0011 6 6 5.5658 2.5577 0.0011 7 6 6.1996 3.7823 0.0010 8 6 5.4599 4.9571 0.0005 9 9 6.0944 6.1498 0.0010 10 6 4.0780 4.9139 0.0005 11 6 3.4197 3.6848 -0.0044 12 6 1.9887 3.6336 -0.0103 13 7 0.8534 3.5930 -0.0154 14 6 4.2521 0.0090 0.0002 15 6 3.6209 -1.2019 0.0000 16 6 2.2077 -1.2237 -0.0005 17 6 1.5100 -2.4487 -0.0069 18 1 0.5079 -2.5015 0.3921 19 6 2.1168 -3.5974 -0.5307 20 7 3.1757 -3.4891 -1.2903 21 14 1.4131 -5.2842 -0.1442 22 1 0.2224 -5.1352 0.7304 23 1 1.0188 -5.9574 -1.4078 24 1 2.4394 -6.1009 0.5522 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 6.1484 1.6483 0.0011 29 1 7.2786 3.8277 0.0006 30 1 3.5087 5.8316 -0.0004 31 1 5.3309 0.0607 0.0011 32 1 4.1880 -2.1209 -0.0006 33 1 3.5956 -4.2846 -1.6533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242581991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = 26.025533 kcal Electronic energy + Delta-G solvation = -20382.187735 eV Core-core repulsion = 17093.664597 eV Total energy + Delta-G solvation = -3288.523138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.67788 -39.43633 -38.06420 -35.53577 -34.49626 -32.43711 -31.35936 -30.87127 -29.58936 -27.13851 -25.40221 -23.64103 -22.86679 -21.13945 -20.21536 -18.77580 -17.67136 -16.43148 -16.04990 -15.85229 -15.45562 -15.40683 -14.73498 -14.25545 -13.59408 -13.56134 -13.35240 -13.08077 -12.95887 -12.55241 -12.35293 -11.98736 -11.81170 -11.74978 -11.69491 -11.56163 -11.22873 -11.13850 -10.99500 -10.93815 -10.74334 -9.98591 -9.70950 -8.88464 -8.72640 -8.43391 -8.19861 -7.43249 -7.15720 -4.72674 0.92006 1.24094 2.43597 2.78853 2.84913 2.90003 2.94666 3.46208 3.53168 3.60310 4.20162 4.26587 4.47885 4.69059 4.98522 5.00173 5.16698 5.37554 5.50069 5.73865 5.95451 6.07139 6.15325 6.22507 6.33104 6.38192 6.52386 6.57245 6.63481 6.74544 6.78142 6.96191 6.99677 7.14907 7.47209 7.59264 7.68800 8.12356 8.30445 8.35028 8.42505 9.38915 9.67389 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.004400 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.352318 B = 6362.357974 C = 7255.440953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.022 3.978 3 N -0.438 5.438 4 C -0.031 4.031 5 C 0.064 3.936 6 C -0.112 4.112 7 C -0.118 4.118 8 C 0.056 3.944 9 F -0.146 7.146 10 C -0.101 4.101 11 C -0.010 4.010 12 C 0.279 3.721 13 N -0.419 5.419 14 C -0.112 4.112 15 C -0.146 4.146 16 C 0.076 3.924 17 C -0.416 4.416 18 H 0.093 0.907 19 C 0.070 3.930 20 N -0.766 5.766 21 Si 0.917 3.083 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.267 1.267 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 4.578 1.485 7.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 N -0.146 5.146 4 C -0.162 4.162 5 C 0.060 3.940 6 C -0.131 4.131 7 C -0.137 4.137 8 C 0.036 3.964 9 F -0.124 7.124 10 C -0.122 4.122 11 C -0.015 4.015 12 C -0.036 4.036 13 N -0.095 5.095 14 C -0.133 4.133 15 C -0.170 4.170 16 C 0.071 3.929 17 C -0.443 4.443 18 H 0.111 0.889 19 C -0.152 4.152 20 N -0.388 5.388 21 Si 0.740 3.260 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.192 1.192 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.563 5.195 1.319 6.436 hybrid contribution 1.012 -1.489 0.022 1.800 sum 4.576 3.706 1.340 6.039 Atomic orbital electron populations 1.20275 0.90826 1.01442 1.00546 1.21003 0.95213 0.87696 1.08756 1.66679 1.08312 1.30489 1.09133 1.18561 0.89344 0.90224 1.18114 1.18793 0.91982 0.91027 0.92205 1.20990 0.93032 0.97482 1.01589 1.21099 1.00445 0.91077 1.01108 1.17302 0.89997 0.80755 1.08323 1.91461 1.82213 1.44208 1.94553 1.20888 0.92652 0.97646 1.01056 1.15659 0.85602 0.92560 1.07646 1.24787 0.91974 0.92399 0.94481 1.80979 1.12229 1.08768 1.07480 1.21252 0.98575 0.93176 1.00279 1.21286 0.94545 0.96736 1.04430 1.18495 0.92689 0.93158 0.88541 1.19875 1.01656 0.91974 1.30845 0.88904 1.26178 0.94180 1.02407 0.92473 1.69760 1.16390 1.32950 1.19713 0.86085 0.80393 0.79835 0.79677 1.17823 1.19431 1.19216 0.93254 0.92762 0.91509 0.84190 0.84722 0.84564 0.87701 0.85415 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 9.58 36.00 0.34 -1.21 16 2 C 0.02 0.52 6.86 -81.81 -0.56 -0.04 16 3 N -0.44 -10.37 6.99 -5.42 -0.04 -10.41 16 4 C -0.03 -0.67 6.71 -82.78 -0.56 -1.23 16 5 C 0.06 1.15 5.91 -104.53 -0.62 0.53 16 6 C -0.11 -1.61 9.40 -39.23 -0.37 -1.98 16 7 C -0.12 -1.48 10.00 -39.49 -0.39 -1.87 16 8 C 0.06 0.75 7.29 -39.36 -0.29 0.46 16 9 F -0.15 -1.92 17.26 2.25 0.04 -1.89 16 10 C -0.10 -1.44 9.72 -39.13 -0.38 -1.82 16 11 C -0.01 -0.18 5.77 -106.50 -0.61 -0.79 16 12 C 0.28 5.52 12.58 -22.47 -0.28 5.24 16 13 N -0.42 -8.93 18.20 41.84 0.76 -8.17 16 14 C -0.11 -2.37 9.38 -39.52 -0.37 -2.74 16 15 C -0.15 -3.40 8.72 -39.01 -0.34 -3.74 16 16 C 0.08 1.86 5.58 -106.63 -0.60 1.27 16 17 C -0.42 -9.69 8.14 -37.86 -0.31 -10.00 16 18 H 0.09 2.06 6.86 -52.49 -0.36 1.70 16 19 C 0.07 1.53 5.19 -17.32 -0.09 1.44 16 20 N -0.77 -17.30 10.94 55.55 0.61 -16.69 16 21 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 22 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 23 H -0.27 -4.75 7.11 56.52 0.40 -4.34 16 24 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.35 6.75 -51.93 -0.35 1.00 16 28 H 0.14 1.78 6.14 -52.49 -0.32 1.46 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.11 1.84 6.15 -52.49 -0.32 1.52 16 32 H 0.13 2.99 6.26 -52.49 -0.33 2.66 16 33 H 0.29 5.85 8.29 -40.82 -0.34 5.51 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -26.28 298.00 -7.10 -33.38 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.51 Total: 4.52 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -5.42 Total: -16.49 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 1.33 Total: -35.27 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.28 -7.10 -33.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242581991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.407 kcal (2) G-P(sol) polarization free energy of solvation -26.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds