Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38941 * 119.23702 * 2 1 4 4 C 1.36847 * 119.81850 * 180.02562 * 3 2 1 5 5 C 1.41166 * 118.39934 * 359.97438 * 4 3 2 6 6 C 1.40784 * 120.72457 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99751 * 149.06373 * 6 5 4 8 8 C 1.40114 * 120.00409 * 329.06327 * 6 5 4 9 9 N 1.30749 * 120.00478 * 163.15781 * 8 6 5 10 10 Si 1.86811 * 119.99768 * 343.15814 * 8 6 5 11 11 H 1.48501 * 109.46875 * 94.91047 * 10 8 6 12 12 H 1.48504 * 109.47210 * 214.91032 * 10 8 6 13 13 H 1.48490 * 109.46941 * 334.91037 * 10 8 6 14 14 C 1.41970 * 118.54639 * 0.02562 * 5 4 3 15 15 C 1.47533 * 120.00086 * 180.02562 * 14 5 4 16 16 C 1.39592 * 120.20297 * 309.63310 * 15 14 5 17 17 C 1.37862 * 120.01819 * 179.72394 * 16 15 14 18 18 C 1.38840 * 120.44801 * 0.55488 * 17 16 15 19 19 F 1.35103 * 119.78692 * 179.74303 * 18 17 16 20 20 C 1.38269 * 120.41955 * 359.72389 * 18 17 16 21 21 C 1.39412 * 119.96514 * 359.97438 * 20 18 17 22 22 C 1.43202 * 120.22106 * 179.97438 * 21 20 18 23 23 N 4.05598 * 96.04437 * 138.98310 * 2 1 3 24 24 N 1.31672 * 119.23814 * 179.73536 * 2 1 3 25 25 H 1.09008 * 109.46964 * 89.99452 * 1 2 3 26 26 H 1.09002 * 109.47068 * 330.00514 * 1 2 3 27 27 H 1.08993 * 109.47504 * 209.99806 * 1 2 3 28 28 H 1.07996 * 120.09225 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.80043 * 180.02562 * 4 3 2 30 30 H 0.97006 * 119.99705 * 179.97438 * 9 8 6 31 31 H 1.08002 * 119.98815 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.77471 * 180.25775 * 17 16 15 33 33 H 1.08001 * 120.02134 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2124 0.0000 4 6 3.5540 1.2263 -0.0005 5 6 4.2380 -0.0086 -0.0005 6 6 5.6452 -0.0514 -0.0005 7 1 6.1605 -0.8698 0.4803 8 6 6.3772 0.9675 -0.6243 9 7 7.6478 1.1184 -0.3554 10 14 5.5377 2.1105 -1.8403 11 1 5.0950 3.3417 -1.1377 12 1 6.4916 2.4722 -2.9194 13 1 4.3592 1.4263 -2.4302 14 6 3.4758 -1.2063 -0.0005 15 6 4.1576 -2.5146 0.0001 16 6 5.1649 -2.7820 -0.9286 17 6 5.8035 -4.0038 -0.9209 18 6 5.4443 -4.9796 -0.0010 19 9 6.0753 -6.1742 -0.0088 20 6 4.4451 -4.7365 0.9233 21 6 3.7922 -3.5048 0.9352 22 6 2.7562 -3.2474 1.8897 23 7 1.9341 -3.0433 2.6471 24 7 2.1501 -1.1490 0.0053 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8899 0.5138 28 1 1.6347 2.1413 0.0004 29 1 4.0976 2.1596 -0.0001 30 1 8.1546 1.8237 -0.7876 31 1 5.4469 -2.0299 -1.6506 32 1 6.5851 -4.2049 -1.6385 33 1 4.1711 -5.5001 1.6363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242582738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = 25.231346 kcal Electronic energy + Delta-G solvation = -20889.304411 eV Core-core repulsion = 17600.746835 eV Total energy + Delta-G solvation = -3288.557576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.63102 -39.54542 -38.13012 -35.77544 -34.43344 -32.47542 -31.78826 -31.08127 -29.36230 -28.10409 -24.74795 -23.68511 -22.74643 -21.58621 -20.50345 -18.75012 -17.70423 -16.40668 -16.20309 -15.76059 -15.73287 -15.33953 -14.81627 -14.02985 -13.76316 -13.66729 -13.43111 -13.25142 -13.12830 -12.84852 -12.59840 -12.24090 -12.14846 -11.92139 -11.72835 -11.58602 -11.39821 -11.26401 -11.03399 -10.84726 -10.48275 -10.16258 -9.69425 -8.84960 -8.73874 -8.48048 -8.24448 -7.65127 -7.30304 -4.80912 1.00504 1.38547 2.20114 2.47395 2.86548 2.97455 3.06352 3.23742 3.37002 3.67813 4.15574 4.20251 4.28303 4.70434 4.96982 5.01567 5.10259 5.29991 5.59194 5.69860 5.75453 5.93488 6.04407 6.10575 6.21189 6.22861 6.27157 6.39280 6.45145 6.55204 6.69607 6.78151 6.91440 7.08980 7.21019 7.36066 7.57339 7.95136 8.04925 8.16900 8.36259 9.17722 9.68274 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.008147 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.504649 B = 3435.829549 C = 5072.421808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.007 4.007 3 C -0.110 4.110 4 C -0.197 4.197 5 C 0.065 3.935 6 C -0.420 4.420 7 H 0.104 0.896 8 C 0.084 3.916 9 N -0.781 5.781 10 Si 0.906 3.094 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.242 1.242 14 C 0.009 3.991 15 C 0.068 3.932 16 C -0.063 4.063 17 C -0.127 4.127 18 C 0.076 3.924 19 F -0.144 7.144 20 C -0.113 4.113 21 C -0.004 4.004 22 C 0.276 3.724 23 N -0.425 5.425 24 N -0.430 5.430 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.292 0.708 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -3.872 -3.506 5.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C -0.130 4.130 4 C -0.223 4.223 5 C 0.060 3.940 6 C -0.447 4.447 7 H 0.122 0.878 8 C -0.139 4.139 9 N -0.402 5.402 10 Si 0.731 3.269 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.165 1.165 14 C -0.130 4.130 15 C 0.064 3.936 16 C -0.082 4.082 17 C -0.147 4.147 18 C 0.057 3.943 19 F -0.122 7.122 20 C -0.135 4.135 21 C -0.008 4.008 22 C -0.039 4.039 23 N -0.101 5.101 24 N -0.138 5.138 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.020 -4.257 -2.323 5.713 hybrid contribution 0.850 1.308 -0.726 1.721 sum -2.170 -2.949 -3.049 4.764 Atomic orbital electron populations 1.20302 0.90958 1.01308 1.00750 1.20261 0.95159 0.88075 1.11340 1.21243 0.94812 0.97755 0.99148 1.21166 0.94023 0.97525 1.09572 1.18350 0.94317 0.90818 0.90494 1.19523 0.89393 1.07273 1.28553 0.87836 1.26259 0.94807 0.96268 0.96559 1.69631 1.08844 1.27950 1.33808 0.86371 0.80295 0.80357 0.79874 1.19223 1.21009 1.16536 1.19207 0.88462 0.90691 1.14597 1.18449 0.92986 0.90655 0.91530 1.21198 0.93702 0.95551 0.97724 1.21198 1.01248 0.93121 0.99118 1.17378 0.95630 0.82164 0.99146 1.91472 1.81024 1.43583 1.96152 1.20812 0.96377 0.96731 0.99531 1.15821 0.95112 0.94676 0.95198 1.25203 0.92847 0.93243 0.92650 1.81079 1.10060 1.07582 1.11338 1.66881 1.09172 1.29551 1.08155 0.92830 0.92665 0.92308 0.87542 0.86947 0.89724 0.83296 0.84438 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.15 36.01 0.37 -0.92 16 2 C -0.01 -0.15 6.79 -82.40 -0.56 -0.71 16 3 C -0.11 -2.24 9.64 -39.82 -0.38 -2.62 16 4 C -0.20 -4.35 7.21 -38.97 -0.28 -4.63 16 5 C 0.07 1.50 5.09 -106.40 -0.54 0.96 16 6 C -0.42 -9.72 7.53 -37.92 -0.29 -10.01 16 7 H 0.10 2.50 7.07 -52.49 -0.37 2.13 16 8 C 0.08 1.89 5.43 -17.31 -0.09 1.80 16 9 N -0.78 -18.03 13.92 55.56 0.77 -17.26 16 10 Si 0.91 18.06 24.53 -169.99 -4.17 13.89 16 11 H -0.27 -5.22 6.71 56.52 0.38 -4.84 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.24 -5.00 6.84 56.52 0.39 -4.62 16 14 C 0.01 0.21 5.86 -82.28 -0.48 -0.27 16 15 C 0.07 1.31 5.09 -104.55 -0.53 0.78 16 16 C -0.06 -1.07 8.09 -39.21 -0.32 -1.39 16 17 C -0.13 -1.85 10.00 -39.50 -0.39 -2.24 16 18 C 0.08 1.11 7.29 -39.35 -0.29 0.83 16 19 F -0.14 -2.03 17.26 2.25 0.04 -1.99 16 20 C -0.11 -1.70 9.72 -39.13 -0.38 -2.08 16 21 C 0.00 -0.07 5.76 -106.48 -0.61 -0.68 16 22 C 0.28 5.44 13.61 -22.47 -0.31 5.14 16 23 N -0.43 -8.93 18.54 41.85 0.78 -8.16 16 24 N -0.43 -9.60 9.08 -5.48 -0.05 -9.65 16 25 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 26 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.11 2.40 4.86 -52.48 -0.26 2.14 16 30 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 31 H 0.15 2.54 7.33 -52.49 -0.38 2.16 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -25.76 297.33 -5.96 -31.72 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.72 Total: 3.02 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -5.09 Total: -16.06 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 1.50 Total: -35.06 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.17 Total: 13.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.76 -5.96 -31.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242582738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.952 kcal (2) G-P(sol) polarization free energy of solvation -25.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds