Wall clock time and date at job start Tue Mar 31 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48503 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46963 * 299.99551 * 3 2 1 6 6 H 1.48492 * 109.47317 * 59.99968 * 3 2 1 7 7 C 1.37873 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00578 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.38344 * 119.94014 * 270.02526 * 10 9 7 12 12 C 1.38310 * 120.24775 * 179.97438 * 11 10 9 13 13 C 1.38032 * 120.12020 * 359.78886 * 12 11 10 14 14 C 1.39348 * 119.87851 * 0.44049 * 13 12 11 15 15 C 1.48335 * 120.12135 * 179.81500 * 14 13 12 16 16 C 1.39406 * 120.10919 * 129.70728 * 15 14 13 17 17 C 1.37973 * 120.00253 * 180.02562 * 16 15 14 18 18 C 1.38365 * 120.29112 * 0.02562 * 17 16 15 19 19 C 1.38576 * 120.28654 * 359.95606 * 18 17 16 20 20 C 1.39147 * 119.90148 * 0.04563 * 19 18 17 21 21 O 1.36425 * 108.70242 * 179.97438 * 20 19 18 22 22 C 1.43985 * 105.48223 * 342.72563 * 21 20 19 23 23 O 1.36532 * 131.47750 * 179.97438 * 19 18 17 24 24 C 1.37998 * 119.93232 * 90.00115 * 10 9 7 25 25 H 0.96999 * 120.00200 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46922 * 59.99762 * 9 7 2 27 27 H 1.08998 * 109.47379 * 300.00220 * 9 7 2 28 28 H 1.07997 * 119.87664 * 0.02562 * 11 10 9 29 29 H 1.07990 * 119.93742 * 180.02562 * 12 11 10 30 30 H 1.07998 * 120.05979 * 180.23434 * 13 12 11 31 31 H 1.07996 * 119.99925 * 0.03642 * 16 15 14 32 32 H 1.08007 * 119.85397 * 179.97438 * 17 16 15 33 33 H 1.07993 * 119.85767 * 179.97438 * 18 17 16 34 34 H 1.09005 * 110.57689 * 145.65131 * 22 21 20 35 35 H 1.08997 * 110.57855 * 268.53796 * 22 21 20 36 36 H 1.08000 * 120.06564 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6446 0.0005 11 6 2.6796 -4.1690 -1.1983 12 6 3.5787 -5.2199 -1.2057 13 6 4.0364 -5.7484 -0.0155 14 6 3.5837 -5.2272 1.1950 15 6 4.0688 -5.7938 2.4772 16 6 4.5646 -4.9511 3.4710 17 6 5.0158 -5.4805 4.6626 18 6 4.9794 -6.8469 4.8774 19 6 4.4886 -7.6955 3.8980 20 6 4.0311 -7.1724 2.6925 21 8 3.6042 -8.2002 1.9035 22 6 4.1821 -9.3889 2.4748 23 8 4.3492 -9.0533 3.8649 24 6 2.6779 -4.1680 1.1964 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 2.3273 -3.7558 -2.1318 29 1 3.9263 -5.6252 -2.1444 30 1 4.7414 -6.5665 -0.0225 31 1 4.5955 -3.8840 3.3082 32 1 5.3998 -4.8255 5.4307 33 1 5.3347 -7.2537 5.8126 34 1 3.5048 -10.2357 2.3636 35 1 5.1463 -9.6053 2.0148 36 1 2.3273 -3.7572 2.1317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242588552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:36 Heat of formation + Delta-G solvation = -20.464886 kcal Electronic energy + Delta-G solvation = -20736.762916 eV Core-core repulsion = 17537.391357 eV Total energy + Delta-G solvation = -3199.371560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.20192 -38.95149 -37.50598 -36.31779 -33.57263 -32.17667 -31.09566 -29.98513 -28.66825 -26.99748 -25.91115 -23.48323 -23.37745 -22.74323 -21.18897 -20.01809 -18.02791 -17.72359 -17.12095 -16.42231 -16.27893 -15.77502 -14.78636 -14.74809 -14.40449 -14.36332 -14.10129 -13.74821 -13.13004 -13.00544 -12.88333 -12.56907 -12.39296 -12.24395 -11.66219 -11.46816 -11.31631 -11.13720 -10.92173 -10.76584 -10.49329 -10.28250 -9.55819 -9.48396 -9.01961 -8.43963 -8.17378 -8.01720 -7.73694 -6.05497 -4.09453 0.97918 1.13684 2.04021 2.12619 2.71365 3.28452 3.36236 3.37235 3.40996 3.56680 4.32950 4.39527 4.52800 4.53915 4.74171 4.95361 5.05190 5.11407 5.24887 5.29286 5.38104 5.50382 5.58483 5.85206 5.93874 6.00243 6.12309 6.17418 6.29061 6.37376 6.44509 6.58439 6.74944 7.02173 7.08502 7.15485 7.17871 7.49302 7.69074 7.82716 7.90484 8.30364 8.96119 9.54587 11.04473 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.004058 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.346968 B = 6898.393300 C = 7598.019621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.035 4.035 11 C -0.116 4.116 12 C -0.124 4.124 13 C -0.122 4.122 14 C -0.064 4.064 15 C -0.009 4.009 16 C -0.097 4.097 17 C -0.109 4.109 18 C -0.108 4.108 19 C 0.026 3.974 20 C 0.040 3.960 21 O -0.299 6.299 22 C 0.211 3.789 23 O -0.313 6.313 24 C -0.102 4.102 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -15.852 6.273 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.035 4.035 11 C -0.134 4.134 12 C -0.142 4.142 13 C -0.140 4.140 14 C -0.064 4.064 15 C -0.009 4.009 16 C -0.115 4.115 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.018 4.018 20 C -0.004 4.004 21 O -0.215 6.215 22 C 0.099 3.901 23 O -0.229 6.229 24 C -0.120 4.120 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.981 -15.925 6.241 19.803 hybrid contribution 0.425 0.646 -0.130 0.784 sum 10.406 -15.279 6.111 19.470 Atomic orbital electron populations 1.69965 1.06049 1.26728 1.50524 1.25010 0.94865 0.99258 0.95175 0.86491 0.80150 0.83508 0.77644 1.19643 1.20949 1.20924 1.21093 0.93086 0.89811 1.50948 0.92368 1.18373 0.92553 0.89583 0.98467 1.20623 0.96144 0.95055 0.91672 1.21186 0.97667 0.96100 0.98423 1.20944 0.98550 0.97585 0.97149 1.20816 1.01163 1.00265 0.91722 1.18522 0.99326 0.97686 0.90882 1.17965 1.00057 0.87669 0.95253 1.21196 0.98116 1.00213 0.92017 1.20864 1.00608 0.93532 0.97686 1.20055 1.02043 0.92028 0.98501 1.19724 1.02975 0.82953 0.96123 1.19748 1.00433 0.90135 0.90126 1.87421 1.68613 1.14525 1.50942 1.25603 0.99204 0.89448 0.75820 1.87336 1.89334 1.18905 1.27330 1.21105 0.97168 0.95098 0.98658 0.92879 0.95244 0.95263 0.86306 0.86849 0.87347 0.83899 0.84334 0.85005 0.85379 0.90155 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.17 9.09 -34.44 -0.31 -14.48 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 10 C -0.03 -0.76 5.07 -104.67 -0.53 -1.29 16 11 C -0.12 -2.27 9.69 -39.52 -0.38 -2.65 16 12 C -0.12 -2.11 10.03 -39.63 -0.40 -2.51 16 13 C -0.12 -2.06 9.33 -39.24 -0.37 -2.42 16 14 C -0.06 -1.14 5.47 -104.90 -0.57 -1.72 16 15 C -0.01 -0.14 5.48 -104.81 -0.57 -0.71 16 16 C -0.10 -1.31 9.51 -39.24 -0.37 -1.68 16 17 C -0.11 -1.20 10.02 -39.63 -0.40 -1.59 16 18 C -0.11 -1.23 10.05 -39.41 -0.40 -1.62 16 19 C 0.03 0.35 7.15 -39.12 -0.28 0.07 16 20 C 0.04 0.60 6.66 -38.74 -0.26 0.34 16 21 O -0.30 -4.30 11.16 -45.44 -0.51 -4.80 16 22 C 0.21 2.13 8.89 101.05 0.90 3.03 16 23 O -0.31 -3.92 11.40 -45.80 -0.52 -4.44 16 24 C -0.10 -2.04 9.16 -39.24 -0.36 -2.40 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.11 1.63 8.05 -52.49 -0.42 1.21 16 31 H 0.14 1.84 8.04 -52.49 -0.42 1.42 16 32 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.12 2.34 8.04 -52.49 -0.42 1.92 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -31.51 317.74 -9.26 -40.77 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.18 Total: -0.06 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -4.55 Total: -27.04 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.03 Total: -9.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.51 -9.26 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242588552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.308 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds