Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38539 * 119.79109 * 2 1 4 4 C 1.38019 * 120.44296 * 180.30439 * 3 2 1 5 5 C 1.39218 * 120.02810 * 359.44344 * 4 3 2 6 6 C 1.48159 * 120.20783 * 180.30238 * 5 4 3 7 7 C 1.39131 * 120.43073 * 64.71765 * 6 5 4 8 8 C 1.40927 * 118.11374 * 179.78617 * 7 6 5 9 9 C 1.41380 * 120.56844 * 180.23517 * 8 7 6 10 10 H 1.08001 * 120.00345 * 203.74119 * 9 8 7 11 11 C 1.39907 * 119.99811 * 23.74074 * 9 8 7 12 12 N 1.30857 * 120.00021 * 17.42893 * 11 9 8 13 13 Si 1.86794 * 119.99946 * 197.42655 * 11 9 8 14 14 H 1.48504 * 109.47434 * 60.00129 * 13 11 9 15 15 H 1.48497 * 109.47254 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47497 * 300.00117 * 13 11 9 17 17 C 1.40821 * 118.86705 * 0.51430 * 8 7 6 18 18 N 1.31503 * 120.71792 * 359.72641 * 17 8 7 19 19 C 1.32156 * 122.09304 * 359.97438 * 18 17 8 20 20 F 1.35096 * 119.46652 * 180.02562 * 19 18 17 21 21 C 1.40686 * 119.58581 * 0.27711 * 5 4 3 22 22 C 1.43202 * 120.21530 * 179.97438 * 21 5 4 23 23 N 4.80198 * 134.52122 * 179.76989 * 2 1 3 24 24 C 1.37916 * 119.79832 * 179.75035 * 2 1 3 25 25 H 1.09000 * 109.47381 * 270.24651 * 1 2 3 26 26 H 1.08997 * 109.47586 * 30.25445 * 1 2 3 27 27 H 1.09007 * 109.47048 * 150.25152 * 1 2 3 28 28 H 1.08002 * 119.77593 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.98602 * 179.72567 * 4 3 2 30 30 H 1.08000 * 120.94423 * 0.03053 * 7 6 5 31 31 H 0.96998 * 119.99820 * 179.97438 * 12 11 9 32 32 H 1.07997 * 119.63978 * 179.75113 * 17 8 7 33 33 H 1.07999 * 120.01327 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2023 0.0000 4 6 3.5753 1.2180 -0.0063 5 6 4.2857 0.0207 -0.0010 6 6 5.7672 0.0330 -0.0010 7 6 6.4676 0.5559 1.0814 8 6 7.8759 0.5388 1.0320 9 6 8.6393 1.0522 2.1056 10 1 9.6500 1.3927 1.9353 11 6 8.0855 1.1190 3.3886 12 7 7.0215 0.4149 3.6795 13 14 8.8648 2.2134 4.6864 14 1 8.8542 3.6223 4.2173 15 1 8.0945 2.1066 5.9515 16 1 10.2658 1.7808 4.9225 17 6 8.5098 0.0071 -0.1075 18 7 7.8027 -0.4711 -1.1078 19 6 6.4812 -0.4771 -1.0939 20 9 5.8078 -0.9821 -2.1506 21 6 3.5879 -1.2009 0.0048 22 6 4.3051 -2.4404 0.0097 23 7 4.8739 -3.4237 0.0138 24 6 2.1923 -1.1968 0.0052 25 1 -0.3634 0.0044 1.0276 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3633 -0.8923 -0.5100 28 1 1.6481 2.1335 0.0004 29 1 4.1044 2.1595 -0.0108 30 1 5.9468 0.9598 1.9371 31 1 6.6378 0.4610 4.5692 32 1 9.5884 -0.0085 -0.1602 33 1 1.6492 -2.1303 0.0097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242593048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = 24.443048 kcal Electronic energy + Delta-G solvation = -20742.715323 eV Core-core repulsion = 17454.123563 eV Total energy + Delta-G solvation = -3288.591759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.61690 -39.53831 -38.13630 -35.98545 -34.26658 -33.54693 -31.13833 -30.65057 -29.95888 -26.40335 -25.59025 -23.69210 -22.67644 -21.70767 -20.75192 -18.08988 -17.40537 -16.69297 -16.08344 -15.83787 -15.49184 -14.98600 -14.54515 -14.16040 -13.91544 -13.66774 -13.17803 -13.11734 -12.82960 -12.59112 -12.48948 -12.34745 -12.06676 -12.04690 -11.82371 -11.59328 -11.47500 -11.29343 -11.22746 -11.02303 -10.75913 -10.21448 -9.54456 -8.84795 -8.75224 -8.53023 -8.11691 -7.67120 -7.08367 -4.68884 1.01281 1.41288 2.24409 2.59762 2.91649 2.93008 2.99669 3.17115 3.30340 3.69833 4.15098 4.27027 4.29373 4.85400 4.96997 4.99108 5.12709 5.21756 5.37007 5.40524 5.56090 5.69068 5.77625 5.95434 6.02337 6.18881 6.36712 6.43877 6.53055 6.58581 6.73725 6.83607 6.87959 7.00065 7.34429 7.53514 7.68374 7.97807 8.13276 8.39422 8.41451 9.15831 9.83511 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.006034 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.526641 B = 4639.365408 C = 5538.315053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.104 4.104 5 C 0.033 3.967 6 C -0.119 4.119 7 C -0.092 4.092 8 C 0.054 3.946 9 C -0.438 4.438 10 H 0.089 0.911 11 C 0.073 3.927 12 N -0.782 5.782 13 Si 0.917 3.083 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.262 1.262 17 C 0.014 3.986 18 N -0.487 5.487 19 C 0.168 3.832 20 F -0.145 7.145 21 C -0.013 4.013 22 C 0.260 3.740 23 N -0.416 5.416 24 C -0.074 4.074 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.289 0.711 32 H 0.140 0.860 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 4.711 -0.533 12.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.122 4.122 5 C 0.030 3.970 6 C -0.123 4.123 7 C -0.117 4.117 8 C 0.050 3.950 9 C -0.467 4.467 10 H 0.107 0.893 11 C -0.147 4.147 12 N -0.406 5.406 13 Si 0.741 3.259 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.186 1.186 17 C -0.148 4.148 18 N -0.198 5.198 19 C 0.014 3.986 20 F -0.124 7.124 21 C -0.016 4.016 22 C -0.055 4.055 23 N -0.091 5.091 24 C -0.094 4.094 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.949 2.742 -1.089 10.377 hybrid contribution -0.292 0.971 1.206 1.576 sum -10.241 3.712 0.118 10.894 Atomic orbital electron populations 1.20751 0.90825 1.02751 1.02324 1.19722 0.96107 0.92572 1.01722 1.21119 0.93901 0.97557 0.98523 1.21197 0.93672 0.97436 0.99877 1.18782 0.92494 0.91442 0.94277 1.19107 0.90773 1.06088 0.96309 1.21724 0.93941 0.99856 0.96149 1.18471 0.92348 0.90727 0.93489 1.19554 1.00787 1.34761 0.91608 0.89288 1.26039 0.94493 0.94074 1.00136 1.69766 1.18381 1.29667 1.22737 0.86197 0.80148 0.80940 0.78655 1.18436 1.20055 1.18633 1.22337 0.97949 1.03157 0.91314 1.66282 1.06176 1.16709 1.30681 1.17492 0.86878 1.08237 0.85990 1.91413 1.78623 1.86336 1.56064 1.16082 0.91873 0.86680 1.06996 1.25480 0.93443 0.92790 0.93800 1.81125 1.07325 1.12172 1.08481 1.20876 0.91412 0.98342 0.98805 0.91183 0.91473 0.91580 0.85474 0.84843 0.84106 0.90012 0.84313 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.00 36.00 0.36 -0.54 16 2 C -0.10 -1.20 5.88 -104.63 -0.61 -1.81 16 3 C -0.09 -1.13 9.67 -39.55 -0.38 -1.51 16 4 C -0.10 -1.60 9.72 -39.30 -0.38 -1.98 16 5 C 0.03 0.64 5.05 -104.54 -0.53 0.11 16 6 C -0.12 -2.71 4.69 -104.77 -0.49 -3.20 16 7 C -0.09 -2.19 8.51 -38.23 -0.33 -2.51 16 8 C 0.05 1.34 5.59 -106.71 -0.60 0.75 16 9 C -0.44 -10.40 9.08 -37.76 -0.34 -10.74 16 10 H 0.09 1.98 7.90 -52.49 -0.41 1.56 16 11 C 0.07 1.64 5.18 -17.34 -0.09 1.55 16 12 N -0.78 -18.36 10.92 55.55 0.61 -17.75 16 13 Si 0.92 16.75 29.59 -169.99 -5.03 11.72 16 14 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 15 H -0.28 -4.95 7.11 56.52 0.40 -4.55 16 16 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 17 C 0.01 0.34 10.96 -16.72 -0.18 0.16 16 18 N -0.49 -12.42 10.33 -12.56 -0.13 -12.55 16 19 C 0.17 4.14 7.78 -16.69 -0.13 4.01 16 20 F -0.14 -3.48 16.12 2.25 0.04 -3.45 16 21 C -0.01 -0.23 5.63 -106.55 -0.60 -0.83 16 22 C 0.26 5.38 13.33 -22.47 -0.30 5.08 16 23 N -0.42 -9.36 18.54 41.84 0.78 -8.59 16 24 C -0.07 -1.02 9.39 -39.20 -0.37 -1.39 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.07 0.48 8.08 -51.92 -0.42 0.06 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.14 3.35 6.19 -52.49 -0.33 3.03 16 31 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 32 H 0.14 3.04 8.06 -52.49 -0.42 2.62 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -28.62 306.20 -6.93 -35.55 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -2.83 Total: 3.32 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -4.97 Total: -12.86 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 1.25 Total: -38.88 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.62 -6.93 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242593048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.990 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds