Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37670 * 120.01683 * 2 1 4 4 C 1.39500 * 120.02918 * 180.02562 * 3 2 1 5 5 C 1.48252 * 119.96731 * 180.02562 * 4 3 2 6 6 C 1.39101 * 120.42280 * 130.00195 * 5 4 3 7 7 C 1.40935 * 118.11843 * 180.02562 * 6 5 4 8 8 C 1.41380 * 120.56930 * 179.97438 * 7 6 5 9 9 H 1.08007 * 120.00077 * 155.74179 * 8 7 6 10 10 C 1.39894 * 120.00240 * 335.74677 * 8 7 6 11 11 N 1.30866 * 119.99823 * 343.50589 * 10 8 7 12 12 Si 1.86800 * 120.00502 * 163.50384 * 10 8 7 13 13 H 1.48508 * 109.46891 * 60.00045 * 12 10 8 14 14 H 1.48498 * 109.47284 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47258 * 300.00235 * 12 10 8 16 16 C 1.40810 * 118.86189 * 0.02562 * 7 6 5 17 17 N 1.31506 * 120.71513 * 0.02562 * 16 7 6 18 18 C 1.32154 * 122.08264 * 359.97438 * 17 16 7 19 19 F 1.35101 * 119.46040 * 179.97438 * 18 17 16 20 20 C 1.39537 * 120.06120 * 0.27602 * 4 3 2 21 21 C 1.37630 * 120.02830 * 359.44683 * 20 4 3 22 22 C 1.39749 * 120.01628 * 180.02562 * 2 1 3 23 23 C 1.43201 * 120.02999 * 359.95581 * 22 2 1 24 24 N 3.48417 * 80.36482 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47389 * 89.99419 * 1 2 3 26 26 H 1.09005 * 109.47141 * 209.99747 * 1 2 3 27 27 H 1.09005 * 109.47148 * 329.99517 * 1 2 3 28 28 H 1.07994 * 119.98110 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.94296 * 0.04250 * 6 5 4 30 30 H 0.97006 * 119.99809 * 180.02562 * 11 10 8 31 31 H 1.07997 * 119.64494 * 179.72199 * 16 7 6 32 32 H 1.08003 * 119.98309 * 179.72287 * 20 4 3 33 33 H 1.07996 * 120.01375 * 180.27099 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.1921 0.0000 4 6 3.5906 1.1924 -0.0005 5 6 4.3309 2.4768 0.0000 6 6 5.3510 2.7015 0.9186 7 6 6.0222 3.9400 0.8761 8 6 7.0667 4.2234 1.7859 9 1 7.8203 4.9543 1.5322 10 6 7.1242 3.5570 3.0145 11 7 6.0705 2.9262 3.4667 12 14 8.7049 3.5675 4.0099 13 1 9.0703 4.9677 4.3437 14 1 8.5059 2.7961 5.2631 15 1 9.7949 2.9477 3.2143 16 6 5.6340 4.8908 -0.0872 17 7 4.6618 4.6308 -0.9338 18 6 4.0106 3.4810 -0.9232 19 9 3.0199 3.2702 -1.8173 20 6 4.2899 -0.0152 -0.0069 21 6 3.6039 -1.2083 -0.0011 22 6 2.2060 -1.2101 -0.0005 23 6 1.4910 -2.4508 -0.0001 24 7 0.9238 -3.4350 0.0015 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6556 2.1273 0.0004 29 1 5.6212 1.9481 1.6437 30 1 6.1103 2.4644 4.3188 31 1 6.1367 5.8458 -0.1281 32 1 5.3699 -0.0134 -0.0118 33 1 4.1453 -2.1427 -0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242769295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = 22.107638 kcal Electronic energy + Delta-G solvation = -20370.863106 eV Core-core repulsion = 17082.170076 eV Total energy + Delta-G solvation = -3288.693030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.68666 -39.59027 -38.27715 -36.34084 -34.29876 -33.32845 -32.09212 -30.53763 -29.05271 -27.10968 -25.62989 -23.90607 -22.47293 -21.41230 -20.69498 -18.51691 -17.63315 -16.75139 -16.15908 -15.58197 -15.46786 -14.90703 -14.66696 -14.28863 -14.25108 -13.61387 -13.19312 -13.05771 -12.99549 -12.74118 -12.61445 -12.42009 -12.31116 -12.15963 -11.89208 -11.76520 -11.52631 -11.35761 -11.25422 -10.94335 -10.77398 -10.24253 -9.58948 -9.11699 -8.66058 -8.55434 -8.16790 -7.64373 -7.11939 -4.73673 0.80848 1.51795 2.18274 2.54688 2.71429 2.89888 2.90816 2.96526 3.13041 3.67029 3.98622 3.99932 4.26489 4.79985 4.89439 4.92374 5.11296 5.25374 5.40285 5.54513 5.58287 5.66618 5.74407 5.94787 6.03133 6.17190 6.34129 6.40662 6.48607 6.52173 6.78725 6.80047 6.88468 6.99379 7.31207 7.49880 7.53529 7.64020 8.09186 8.34926 8.37719 9.10145 9.79608 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.005099 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.547876 B = 5489.910951 C = 6662.482976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 C -0.106 4.106 4 C 0.028 3.972 5 C -0.113 4.113 6 C -0.092 4.092 7 C 0.054 3.946 8 C -0.438 4.438 9 H 0.089 0.911 10 C 0.073 3.927 11 N -0.783 5.783 12 Si 0.916 3.084 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.260 1.260 16 C 0.014 3.986 17 N -0.488 5.488 18 C 0.166 3.834 19 F -0.144 7.144 20 C -0.116 4.116 21 C -0.064 4.064 22 C -0.056 4.056 23 C 0.269 3.731 24 N -0.439 5.439 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.289 0.711 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -4.091 -0.962 4.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.037 4.037 3 C -0.125 4.125 4 C 0.027 3.973 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.049 3.951 8 C -0.467 4.467 9 H 0.107 0.893 10 C -0.147 4.147 11 N -0.407 5.407 12 Si 0.740 3.260 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.185 1.185 16 C -0.148 4.148 17 N -0.200 5.200 18 C 0.012 3.988 19 F -0.124 7.124 20 C -0.134 4.134 21 C -0.085 4.085 22 C -0.060 4.060 23 C -0.045 4.045 24 N -0.115 5.115 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.248 -5.161 -1.387 6.254 hybrid contribution 0.960 -0.197 1.031 1.423 sum -2.288 -5.359 -0.355 5.837 Atomic orbital electron populations 1.20880 0.90795 1.03113 1.02875 1.19744 0.95865 0.91309 0.96808 1.21055 0.93311 0.97369 1.00720 1.19035 0.92677 0.92763 0.92835 1.19150 1.00378 0.92816 0.99343 1.21780 0.94759 0.97793 0.97373 1.18480 0.92821 0.90986 0.92795 1.19565 1.08467 1.19692 0.98989 0.89306 1.26021 0.97699 0.92956 0.98028 1.69751 1.28443 1.23643 1.18849 0.86205 0.81353 0.79827 0.78629 1.18619 1.20045 1.18462 1.22337 0.96611 0.99135 0.96669 1.66294 1.08461 1.19724 1.25508 1.17497 0.94128 0.92904 0.94272 1.91412 1.59118 1.94621 1.67214 1.21172 1.00541 0.90714 1.00944 1.20987 0.91583 0.98663 0.97263 1.15883 0.92267 0.86212 1.11606 1.25738 0.92989 0.92738 0.93048 1.81203 1.08994 1.11184 1.10110 0.90511 0.91830 0.90496 0.84932 0.84061 0.89983 0.84307 0.84750 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.60 36.00 0.35 -1.01 16 2 C -0.03 -0.48 5.91 -104.27 -0.62 -1.10 16 3 C -0.11 -1.70 8.49 -39.32 -0.33 -2.03 16 4 C 0.03 0.50 5.33 -104.83 -0.56 -0.06 16 5 C -0.11 -2.38 5.48 -104.76 -0.57 -2.95 16 6 C -0.09 -2.05 8.28 -38.24 -0.32 -2.37 16 7 C 0.05 1.25 5.59 -106.71 -0.60 0.65 16 8 C -0.44 -9.89 9.08 -37.77 -0.34 -10.23 16 9 H 0.09 1.88 7.90 -52.48 -0.41 1.47 16 10 C 0.07 1.57 5.19 -17.34 -0.09 1.48 16 11 N -0.78 -17.46 10.90 55.54 0.61 -16.86 16 12 Si 0.92 16.13 29.59 -169.99 -5.03 11.10 16 13 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 14 H -0.28 -4.79 7.11 56.52 0.40 -4.39 16 15 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 16 C 0.01 0.31 10.96 -16.72 -0.18 0.13 16 17 N -0.49 -11.43 10.33 -12.57 -0.13 -11.56 16 18 C 0.17 3.73 8.30 -16.71 -0.14 3.59 16 19 F -0.14 -3.07 15.89 2.25 0.04 -3.04 16 20 C -0.12 -1.76 9.51 -39.32 -0.37 -2.13 16 21 C -0.06 -0.85 9.74 -39.22 -0.38 -1.23 16 22 C -0.06 -0.77 5.74 -106.83 -0.61 -1.38 16 23 C 0.27 3.78 13.78 -22.47 -0.31 3.47 16 24 N -0.44 -6.78 18.54 41.84 0.78 -6.00 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 27 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.13 2.10 7.77 -52.49 -0.41 1.69 16 29 H 0.14 3.17 6.20 -52.49 -0.33 2.84 16 30 H 0.29 5.88 8.30 -40.82 -0.34 5.54 16 31 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 32 H 0.13 1.93 8.04 -52.48 -0.42 1.51 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -25.20 305.17 -6.99 -32.19 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -2.76 Total: 4.73 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -5.08 Total: -15.16 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 1.25 Total: -34.42 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.20 -6.99 -32.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242769295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.297 kcal (2) G-P(sol) polarization free energy of solvation -25.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds