Wall clock time and date at job start Tue Mar 31 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86806 * 119.99778 * 2 1 4 4 H 1.48509 * 109.47096 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.47198 * 30.00310 * 3 2 1 6 6 H 1.48495 * 109.46906 * 150.00403 * 3 2 1 7 7 C 1.39924 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00484 * 197.79996 * 7 2 1 9 9 C 1.41326 * 119.99665 * 17.80892 * 7 2 1 10 10 C 1.40812 * 120.20591 * 24.62928 * 9 7 2 11 11 C 1.37614 * 120.02906 * 180.02562 * 10 9 7 12 12 C 1.38506 * 120.45806 * 359.95216 * 11 10 9 13 13 C 1.39597 * 120.40985 * 0.02850 * 12 11 10 14 14 C 1.48273 * 120.02199 * 179.97438 * 13 12 11 15 15 C 1.35483 * 126.71524 * 64.70300 * 14 13 12 16 16 N 1.36684 * 109.73413 * 179.87068 * 15 14 13 17 17 H 0.97002 * 124.86324 * 180.20410 * 16 15 14 18 18 C 1.37515 * 110.28274 * 0.41528 * 16 15 14 19 19 N 1.32699 * 132.99505 * 179.75820 * 18 16 15 20 20 C 1.31586 * 121.67874 * 180.02562 * 19 18 16 21 21 C 1.38638 * 121.55771 * 359.95562 * 20 19 18 22 22 C 1.38262 * 119.36930 * 0.02562 * 21 20 19 23 23 C 1.39497 * 118.05745 * 0.02562 * 22 21 20 24 24 C 1.39161 * 119.95974 * 359.97438 * 13 12 11 25 25 F 1.35099 * 120.22613 * 179.72484 * 24 13 12 26 26 H 0.97008 * 120.00325 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.98813 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.77278 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.79674 * 180.02562 * 12 11 10 30 30 H 1.08003 * 125.13847 * 0.02592 * 15 14 13 31 31 H 1.08000 * 119.22370 * 179.97438 * 20 19 18 32 32 H 1.08003 * 120.31556 * 180.02562 * 21 20 19 33 33 H 1.08004 * 120.97268 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0465 -1.4002 5 1 1.4399 2.6527 0.7001 6 1 3.5400 1.4402 0.6999 7 6 2.0081 -1.2117 -0.0005 8 1 3.0493 -1.2343 0.2853 9 6 1.3523 -2.4062 -0.3754 10 6 0.2228 -2.3607 -1.2150 11 6 -0.4133 -3.5259 -1.5774 12 6 0.0499 -4.7494 -1.1224 13 6 1.1682 -4.8163 -0.2896 14 6 1.6563 -6.1306 0.1928 15 6 2.1639 -7.1335 -0.5636 16 7 2.5084 -8.1864 0.2370 17 1 2.8956 -9.0185 -0.0773 18 6 2.2232 -7.8993 1.5512 19 7 2.3669 -8.5840 2.6788 20 6 2.0106 -8.0824 3.8420 21 6 1.4673 -6.8114 3.9483 22 6 1.2939 -6.0504 2.8070 23 6 1.6778 -6.6033 1.5852 24 6 1.8246 -3.6486 0.0876 25 9 2.9041 -3.7067 0.8978 26 1 -0.4851 0.8401 0.0004 27 1 -0.1444 -1.4109 -1.5748 28 1 -1.2796 -3.4862 -2.2212 29 1 -0.4573 -5.6573 -1.4138 30 1 2.2813 -7.1044 -1.6368 31 1 2.1449 -8.6747 4.7350 32 1 1.1822 -6.4193 4.9134 33 1 0.8727 -5.0573 2.8598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242860435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:49 Heat of formation + Delta-G solvation = 37.872918 kcal Electronic energy + Delta-G solvation = -20772.382813 eV Core-core repulsion = 17484.373417 eV Total energy + Delta-G solvation = -3288.009397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.18509 -41.15757 -37.68362 -37.09207 -33.98919 -32.66974 -30.71405 -29.66674 -29.27582 -27.51398 -25.34115 -23.40685 -22.26114 -22.03214 -20.69971 -19.26381 -18.10825 -16.89089 -16.38298 -15.99371 -15.69737 -15.28405 -14.78322 -14.45576 -14.33701 -13.99798 -13.94422 -12.98770 -12.87496 -12.62567 -12.62024 -12.06405 -11.91115 -11.77988 -11.62686 -11.26975 -11.12952 -10.70596 -10.46712 -10.07494 -9.88710 -9.62090 -9.29072 -9.15248 -8.19467 -7.87596 -7.48668 -7.14627 -6.86336 -4.45467 1.28979 1.63875 2.50605 2.64718 3.00638 3.03295 3.07797 3.08444 3.16802 3.87461 4.18659 4.47006 4.72814 5.06669 5.08533 5.26120 5.40727 5.50191 5.64068 5.84311 5.91378 6.02636 6.17953 6.26064 6.52192 6.57702 6.70371 6.78000 6.91036 7.07619 7.11796 7.22835 7.48323 7.52776 7.59099 7.88621 7.93963 8.04688 8.23888 8.48259 8.69177 8.78591 10.07101 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.004930 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.978962 B = 5678.552619 C = 6208.380510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.085 3.915 10 C -0.144 4.144 11 C -0.112 4.112 12 C -0.202 4.202 13 C -0.034 4.034 14 C -0.088 4.088 15 C 0.054 3.946 16 N -0.582 5.582 17 H 0.416 0.584 18 C 0.280 3.720 19 N -0.507 5.507 20 C 0.130 3.870 21 C -0.211 4.211 22 C -0.013 4.013 23 C -0.132 4.132 24 C -0.008 4.008 25 F -0.158 7.158 26 H 0.283 0.717 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.178 0.822 31 H 0.156 0.844 32 H 0.134 0.866 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -9.108 1.246 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.082 3.918 10 C -0.164 4.164 11 C -0.131 4.131 12 C -0.222 4.222 13 C -0.036 4.036 14 C -0.095 4.095 15 C -0.071 4.071 16 N -0.189 5.189 17 H 0.253 0.747 18 C 0.047 3.953 19 N -0.221 5.221 20 C -0.036 4.036 21 C -0.233 4.233 22 C -0.039 4.039 23 C -0.139 4.139 24 C -0.028 4.028 25 F -0.137 7.137 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.195 0.805 31 H 0.173 0.827 32 H 0.152 0.848 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.328 -9.873 1.110 10.024 hybrid contribution 0.284 1.215 0.080 1.250 sum 1.612 -8.658 1.191 8.887 Atomic orbital electron populations 1.69815 1.07597 1.29544 1.34494 1.25890 0.94745 1.01418 0.92067 0.86247 0.80579 0.80169 0.79449 1.19111 1.20177 1.18465 1.19511 0.98423 0.90939 1.39466 0.89950 1.17558 0.92681 0.90655 0.90954 1.21232 0.98154 0.97367 0.99607 1.20643 0.99140 0.92856 1.00416 1.20240 0.99325 0.96631 1.05965 1.17607 0.97176 0.88186 1.00624 1.18991 1.05641 0.94721 0.90162 1.21878 1.02350 0.86634 0.96260 1.41349 1.56723 1.17279 1.03547 0.74725 1.18347 0.99454 0.91637 0.85826 1.66443 1.21513 1.37301 0.96861 1.22310 0.94484 0.93408 0.93354 1.21807 1.05821 0.96495 0.99141 1.21067 0.93340 0.99253 0.90250 1.19822 1.04719 0.95005 0.94399 1.17853 0.90663 0.93623 1.00668 1.91280 1.53597 1.97208 1.71596 0.90614 0.85696 0.88621 0.88507 0.80455 0.82709 0.84843 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.64 10.96 55.55 0.61 -19.04 16 2 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.34 29.60 -169.99 -5.03 13.30 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.45 -11.98 8.78 -37.78 -0.33 -12.31 16 8 H 0.08 2.17 7.74 -52.49 -0.41 1.77 16 9 C 0.08 2.22 5.57 -106.80 -0.60 1.62 16 10 C -0.14 -3.55 8.69 -38.84 -0.34 -3.89 16 11 C -0.11 -2.45 10.01 -39.71 -0.40 -2.84 16 12 C -0.20 -4.26 9.78 -38.98 -0.38 -4.64 16 13 C -0.03 -0.76 5.77 -104.92 -0.61 -1.37 16 14 C -0.09 -1.72 5.34 -103.18 -0.55 -2.27 16 15 C 0.05 0.84 11.79 -16.37 -0.19 0.64 16 16 N -0.58 -8.42 6.03 -11.92 -0.07 -8.49 16 17 H 0.42 4.49 8.96 -40.82 -0.37 4.12 16 18 C 0.28 4.86 8.41 -155.62 -1.31 3.55 16 19 N -0.51 -8.31 10.39 -12.28 -0.13 -8.43 16 20 C 0.13 1.82 11.15 -17.51 -0.20 1.63 16 21 C -0.21 -3.05 10.10 -39.42 -0.40 -3.44 16 22 C -0.01 -0.23 10.22 -39.10 -0.40 -0.63 16 23 C -0.13 -2.53 6.37 -104.94 -0.67 -3.20 16 24 C -0.01 -0.19 7.28 -38.29 -0.28 -0.47 16 25 F -0.16 -4.02 16.26 2.25 0.04 -3.99 16 26 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 27 H 0.13 3.14 6.16 -52.49 -0.32 2.82 16 28 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 29 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 30 H 0.18 2.19 8.06 -52.48 -0.42 1.76 16 31 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -29.56 298.45 -9.58 -39.14 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.77 Total: 8.82 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -6.73 Total: -25.82 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.41 Total: -35.96 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.56 -9.58 -39.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242860435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.013 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds