Wall clock time and date at job start Tue Mar 31 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86807 * 119.99788 * 2 1 4 4 H 1.48501 * 109.47026 * 270.00147 * 3 2 1 5 5 H 1.48499 * 109.46994 * 30.00342 * 3 2 1 6 6 H 1.48494 * 109.46763 * 150.00087 * 3 2 1 7 7 C 1.37871 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00137 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.50703 * 109.46793 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.86478 * 90.00498 * 10 9 7 12 12 C 1.37985 * 120.13335 * 179.97438 * 11 10 9 13 13 C 1.39443 * 119.86419 * 359.97438 * 12 11 10 14 14 C 1.48182 * 120.13129 * 179.97438 * 13 12 11 15 15 C 1.39197 * 120.20498 * 238.03275 * 14 13 12 16 16 C 1.38035 * 120.02245 * 179.71704 * 15 14 13 17 17 C 1.38536 * 120.44249 * 0.56113 * 16 15 14 18 18 C 1.37907 * 120.41001 * 359.71870 * 17 16 15 19 19 C 1.39574 * 119.96802 * 0.02562 * 18 17 16 20 20 C 1.47489 * 120.21747 * 179.97438 * 19 18 17 21 21 O 1.21495 * 119.99861 * 186.48537 * 20 19 18 22 22 O 1.34747 * 120.00313 * 6.47910 * 20 19 18 23 23 C 1.39441 * 119.73950 * 359.97438 * 13 12 11 24 24 C 1.37990 * 119.86549 * 0.05945 * 23 13 12 25 25 H 0.96997 * 119.99827 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46451 * 60.00487 * 9 7 2 27 27 H 1.08997 * 109.47158 * 300.00461 * 9 7 2 28 28 H 1.08008 * 119.93576 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.06840 * 179.70184 * 12 11 10 30 30 H 1.07996 * 119.98827 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.77787 * 180.30504 * 16 15 14 32 32 H 1.07997 * 119.79009 * 179.74349 * 17 16 15 33 33 H 1.08008 * 120.01443 * 179.97438 * 18 17 16 34 34 H 0.96698 * 117.00181 * 179.97438 * 22 20 19 35 35 H 1.07999 * 120.06561 * 180.02562 * 23 13 12 36 36 H 1.08004 * 119.93002 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 6 4.2432 -3.2645 -1.2006 12 6 4.7036 -4.5653 -1.2070 13 6 4.9383 -5.2247 -0.0009 14 6 5.4322 -6.6218 -0.0009 15 6 4.7041 -7.6219 0.6374 16 6 5.1647 -8.9231 0.6301 17 6 6.3566 -9.2423 0.0002 18 6 7.0953 -8.2647 -0.6326 19 6 6.6430 -6.9443 -0.6404 20 6 7.4289 -5.8944 -1.3151 21 8 7.0950 -4.7301 -1.2201 22 8 8.5173 -6.2264 -2.0368 23 6 4.7064 -4.5642 1.2050 24 6 4.2453 -3.2637 1.1986 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 4.0614 -2.7526 -2.1342 29 1 4.8776 -5.0731 -2.1441 30 1 3.7760 -7.3806 1.1341 31 1 4.5942 -9.6968 1.1223 32 1 6.7092 -10.2631 0.0046 33 1 8.0239 -8.5206 -1.1214 34 1 9.0000 -5.5037 -2.4609 35 1 4.8868 -5.0698 2.1422 36 1 4.0649 -2.7512 2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242878870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:38 Heat of formation + Delta-G solvation = -41.358214 kcal Electronic energy + Delta-G solvation = -20727.793958 eV Core-core repulsion = 17527.516396 eV Total energy + Delta-G solvation = -3200.277562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65046 -38.95912 -38.09568 -36.08496 -33.70637 -32.24019 -31.57626 -30.27831 -30.21548 -27.19966 -24.74251 -23.43521 -22.35184 -21.71935 -21.05293 -19.86677 -18.14875 -17.50186 -16.74227 -16.44367 -15.71324 -15.24241 -15.09362 -14.66468 -14.41589 -14.20192 -14.04944 -13.35556 -13.00248 -12.84094 -12.80305 -12.42480 -12.14881 -11.86193 -11.61702 -11.58707 -11.50221 -11.01126 -10.68582 -10.54898 -10.26701 -9.94807 -9.84671 -9.36000 -9.24075 -9.05547 -8.56160 -8.16902 -7.54392 -6.05455 -4.04224 0.51233 1.07195 2.10369 2.14547 2.54947 2.94232 3.30650 3.38095 3.41995 3.61907 4.43734 4.45585 4.59364 4.70987 4.78288 4.93408 5.20433 5.26707 5.31651 5.50713 5.53459 5.61444 5.76864 5.93384 6.00989 6.14155 6.20510 6.23567 6.33204 6.42805 6.59452 6.62060 6.70974 7.01994 7.06727 7.07376 7.16371 7.65113 7.66806 7.76600 7.88490 8.52057 8.99939 9.55105 11.07511 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.003975 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.473326 B = 7042.761433 C = 7706.132721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.012 3.988 10 C -0.015 4.015 11 C -0.125 4.125 12 C -0.056 4.056 13 C -0.095 4.095 14 C 0.041 3.959 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.144 4.144 18 C -0.063 4.063 19 C -0.126 4.126 20 C 0.512 3.488 21 O -0.478 6.478 22 O -0.521 6.521 23 C -0.097 4.097 24 C -0.129 4.129 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.679 -18.061 -0.850 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.025 4.025 10 C -0.015 4.015 11 C -0.143 4.143 12 C -0.074 4.074 13 C -0.095 4.095 14 C 0.041 3.959 15 C -0.141 4.141 16 C -0.100 4.100 17 C -0.162 4.162 18 C -0.081 4.081 19 C -0.127 4.127 20 C 0.355 3.645 21 O -0.365 6.365 22 O -0.333 6.333 23 C -0.115 4.115 24 C -0.147 4.147 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.135 0.865 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.270 0.730 35 H 0.129 0.871 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.205 -17.924 -0.631 23.513 hybrid contribution 0.653 1.334 -0.348 1.525 sum 15.858 -16.590 -0.979 22.971 Atomic orbital electron populations 1.69903 1.06240 1.26936 1.50863 1.24994 0.94734 0.98998 0.94518 0.86807 0.80429 0.83664 0.78653 1.20169 1.21256 1.18909 1.20934 0.88224 0.94671 1.51084 0.90787 1.18846 0.97438 0.88877 0.97364 1.20319 0.91366 0.97590 0.92193 1.20869 1.00994 0.94320 0.98151 1.20708 0.96606 0.94455 0.95658 1.18295 1.05204 0.91714 0.94240 1.18967 0.91031 0.93655 0.92245 1.21323 1.00519 0.92020 1.00229 1.21382 0.95506 0.96381 0.96719 1.21137 0.95719 0.99559 0.99790 1.21375 0.99338 0.91190 0.96188 1.19090 0.96225 0.92642 1.04752 1.20877 0.78686 0.88337 0.76557 1.91071 1.66964 1.20327 1.58139 1.84535 1.40486 1.45226 1.63086 1.20906 0.99728 0.95027 0.95875 1.20884 1.01230 0.94441 0.98192 0.92632 0.95388 0.95831 0.86468 0.87979 0.84614 0.85267 0.85345 0.84628 0.72981 0.87050 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.51 -14.78 9.65 -34.44 -0.33 -15.12 16 8 H 0.07 2.33 7.98 -52.48 -0.42 1.91 16 9 C 0.01 0.29 4.17 -29.03 -0.12 0.17 16 10 C -0.01 -0.33 5.07 -104.55 -0.53 -0.86 16 11 C -0.13 -2.59 9.68 -39.64 -0.38 -2.97 16 12 C -0.06 -1.03 6.82 -39.23 -0.27 -1.30 16 13 C -0.09 -1.62 4.16 -104.92 -0.44 -2.05 16 14 C 0.04 0.58 5.41 -104.53 -0.57 0.01 16 15 C -0.12 -1.42 9.64 -39.30 -0.38 -1.79 16 16 C -0.08 -0.73 10.03 -39.55 -0.40 -1.13 16 17 C -0.14 -1.21 10.02 -39.59 -0.40 -1.61 16 18 C -0.06 -0.62 9.61 -39.20 -0.38 -0.99 16 19 C -0.13 -1.61 5.88 -104.71 -0.62 -2.22 16 20 C 0.51 6.81 7.97 34.50 0.27 7.09 16 21 O -0.48 -8.00 13.13 -19.26 -0.25 -8.25 16 22 O -0.52 -4.97 12.70 -40.62 -0.52 -5.49 16 23 C -0.10 -1.71 9.65 -39.22 -0.38 -2.08 16 24 C -0.13 -2.60 9.68 -39.64 -0.38 -2.98 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 27 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 28 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 29 H 0.10 1.72 7.83 -52.49 -0.41 1.31 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 1.08 7.63 -52.48 -0.40 0.68 16 34 H 0.41 2.26 9.11 45.56 0.42 2.67 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -34.15 314.77 -8.59 -42.74 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.28 Total: 2.20 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -5.39 Total: -25.91 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.77 Total: -13.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.15 -8.59 -42.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242878870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.379 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds