Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47204 * 269.99438 * 3 2 1 5 5 H 1.48503 * 109.47074 * 29.99681 * 3 2 1 6 6 H 1.48509 * 109.47204 * 149.99365 * 3 2 1 7 7 C 1.37883 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.38358 * 119.93953 * 270.25795 * 10 9 7 12 12 C 1.38311 * 120.26603 * 180.29897 * 11 10 9 13 13 C 1.38014 * 120.13316 * 359.44790 * 12 11 10 14 14 C 1.39417 * 119.86437 * 0.27086 * 13 12 11 15 15 C 1.48175 * 120.13075 * 180.02562 * 14 13 12 16 16 C 1.39211 * 120.20468 * 238.18187 * 15 14 13 17 17 C 1.38033 * 120.02443 * 179.97438 * 16 15 14 18 18 C 1.38533 * 120.44381 * 0.02562 * 17 16 15 19 19 C 1.37916 * 120.40991 * 0.02562 * 18 17 16 20 20 C 1.39569 * 119.96457 * 359.70146 * 19 18 17 21 21 C 1.47497 * 120.22020 * 180.30209 * 20 19 18 22 22 O 1.21488 * 120.00544 * 186.51236 * 21 20 19 23 23 O 1.34747 * 119.99718 * 6.50445 * 21 20 19 24 24 C 1.37967 * 119.93136 * 90.00296 * 10 9 7 25 25 H 0.96996 * 120.00189 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46852 * 60.00091 * 9 7 2 27 27 H 1.08997 * 109.47122 * 300.00134 * 9 7 2 28 28 H 1.07999 * 119.86505 * 0.02562 * 11 10 9 29 29 H 1.08005 * 119.93552 * 179.72046 * 12 11 10 30 30 H 1.07998 * 120.06471 * 180.25788 * 13 12 11 31 31 H 1.07998 * 119.98352 * 359.97438 * 16 15 14 32 32 H 1.07995 * 119.77863 * 179.97438 * 17 16 15 33 33 H 1.07995 * 119.79459 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.01032 * 179.97438 * 19 18 17 35 35 H 0.96697 * 117.00493 * 180.02562 * 23 21 20 36 36 H 1.08005 * 120.06669 * 359.95607 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6832 -4.1659 -1.1984 12 6 3.5773 -5.2211 -1.2063 13 6 4.0319 -5.7530 -0.0167 14 6 3.5837 -5.2281 1.1947 15 6 4.0684 -5.7942 2.4754 16 6 3.1642 -6.3094 3.4001 17 6 3.6198 -6.8364 4.5917 18 6 4.9752 -6.8569 4.8775 19 6 5.8867 -6.3504 3.9749 20 6 5.4453 -5.8187 2.7624 21 6 6.4158 -5.2816 1.7901 22 8 6.0233 -4.7135 0.7905 23 8 7.7377 -5.4209 2.0107 24 6 2.6777 -4.1678 1.1962 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 2.3338 -3.7500 -2.1318 29 1 3.9239 -5.6269 -2.1453 30 1 4.7333 -6.5742 -0.0242 31 1 2.1059 -6.2967 3.1850 32 1 2.9149 -7.2346 5.3064 33 1 5.3201 -7.2713 5.8133 34 1 6.9419 -6.3693 4.2046 35 1 8.3351 -5.0523 1.3456 36 1 2.3273 -3.7569 2.1315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242879290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = -44.827865 kcal Electronic energy + Delta-G solvation = -20936.070374 eV Core-core repulsion = 17735.642357 eV Total energy + Delta-G solvation = -3200.428018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56445 -38.87407 -37.99590 -35.99065 -33.52927 -32.31481 -31.49202 -30.97603 -28.84404 -26.92642 -24.71496 -23.25506 -23.15550 -21.49406 -21.00829 -19.64713 -18.04542 -17.31874 -16.34417 -16.09449 -15.73649 -15.33124 -15.14034 -14.64147 -14.44761 -14.29448 -13.88788 -13.28076 -12.99190 -12.72676 -12.49376 -12.31360 -11.88545 -11.76564 -11.46384 -11.33362 -11.25803 -10.98537 -10.73815 -10.45783 -10.37509 -10.15418 -9.54430 -9.35352 -9.14919 -9.00878 -8.38402 -7.99051 -7.54095 -6.00224 -4.03240 0.60129 1.15121 2.12140 2.26942 2.64921 3.02886 3.33218 3.38953 3.44564 3.70599 4.41502 4.57801 4.66807 4.79907 4.86599 5.01251 5.28937 5.34333 5.40217 5.57425 5.64259 5.69773 5.85111 6.03002 6.09116 6.21635 6.27926 6.29343 6.45292 6.51977 6.64314 6.74878 6.85504 7.15549 7.22792 7.28198 7.55284 7.80837 7.91166 7.96526 7.97861 8.37971 9.02477 9.60327 11.09645 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.004633 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.209957 B = 6041.601107 C = 6128.797623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.049 3.951 10 C -0.041 4.041 11 C -0.112 4.112 12 C -0.128 4.128 13 C -0.083 4.083 14 C -0.071 4.071 15 C 0.038 3.962 16 C -0.121 4.121 17 C -0.082 4.082 18 C -0.143 4.143 19 C -0.063 4.063 20 C -0.123 4.123 21 C 0.511 3.489 22 O -0.475 6.475 23 O -0.521 6.521 24 C -0.098 4.098 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.411 0.589 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.005 -15.738 7.592 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.013 3.987 10 C -0.041 4.041 11 C -0.130 4.130 12 C -0.146 4.146 13 C -0.102 4.102 14 C -0.071 4.071 15 C 0.038 3.962 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.161 4.161 19 C -0.081 4.081 20 C -0.124 4.124 21 C 0.354 3.646 22 O -0.362 6.362 23 O -0.334 6.334 24 C -0.116 4.116 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.269 0.731 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.471 -15.615 7.603 20.280 hybrid contribution 0.999 1.301 -0.420 1.693 sum 11.470 -14.314 7.183 19.699 Atomic orbital electron populations 1.69955 1.05994 1.26719 1.50826 1.24997 0.94859 0.99172 0.95270 0.86561 0.79881 0.83245 0.78190 1.20576 1.21167 1.19850 1.21096 0.93116 0.89921 1.50574 0.92485 1.18334 0.92518 0.89635 0.98256 1.20523 0.96638 0.95262 0.91687 1.21116 0.97703 0.95926 0.98236 1.20829 0.98957 0.97828 0.96970 1.20538 0.98356 0.99640 0.91636 1.18454 0.99550 0.98278 0.90797 1.18993 0.90671 0.92820 0.93709 1.21311 1.00075 0.99075 0.93438 1.21367 0.95851 0.96529 0.96282 1.21132 0.93188 1.01848 0.99973 1.21366 1.00425 0.94359 0.91995 1.19073 0.91472 1.06526 0.95379 1.20882 0.81231 0.77350 0.85170 1.91085 1.79138 1.38126 1.27803 1.84531 1.18195 1.76305 1.54361 1.20979 0.96868 0.95321 0.98450 0.92914 0.95341 0.95423 0.86588 0.87214 0.88239 0.84588 0.85260 0.85359 0.84640 0.73058 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.76 9.09 -34.44 -0.31 -15.08 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.05 1.31 5.10 -29.04 -0.15 1.16 16 10 C -0.04 -0.94 5.06 -104.68 -0.53 -1.47 16 11 C -0.11 -2.33 9.69 -39.51 -0.38 -2.71 16 12 C -0.13 -2.34 10.03 -39.64 -0.40 -2.74 16 13 C -0.08 -1.49 6.80 -39.22 -0.27 -1.76 16 14 C -0.07 -1.30 4.18 -104.92 -0.44 -1.73 16 15 C 0.04 0.59 5.41 -104.53 -0.57 0.02 16 16 C -0.12 -1.53 9.64 -39.30 -0.38 -1.91 16 17 C -0.08 -0.82 10.02 -39.55 -0.40 -1.22 16 18 C -0.14 -1.35 10.02 -39.59 -0.40 -1.75 16 19 C -0.06 -0.70 9.61 -39.20 -0.38 -1.07 16 20 C -0.12 -1.74 5.88 -104.71 -0.62 -2.35 16 21 C 0.51 7.49 7.96 34.50 0.27 7.76 16 22 O -0.48 -8.67 13.08 -19.26 -0.25 -8.92 16 23 O -0.52 -5.58 12.70 -40.62 -0.52 -6.09 16 24 C -0.10 -2.04 9.30 -39.22 -0.36 -2.41 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.10 1.61 7.78 -52.49 -0.41 1.20 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.14 1.23 7.63 -52.49 -0.40 0.83 16 35 H 0.41 2.71 9.11 45.56 0.42 3.12 16 36 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -33.86 318.27 -8.96 -42.83 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.31 Total: 2.07 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -5.39 Total: -25.66 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.77 Total: -15.01 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.86 -8.96 -42.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242879290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.002 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds