Wall clock time and date at job start Tue Mar 31 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36232 * 119.94038 * 2 1 4 4 C 1.40947 * 119.88472 * 179.70116 * 3 2 1 5 5 C 1.40973 * 120.11449 * 180.29612 * 4 3 2 6 6 H 1.07999 * 120.00436 * 204.84104 * 5 4 3 7 7 C 1.40098 * 119.99738 * 24.84351 * 5 4 3 8 8 N 1.30745 * 119.99666 * 17.78666 * 7 5 4 9 9 Si 1.86791 * 120.00001 * 197.79323 * 7 5 4 10 10 H 1.48508 * 109.47047 * 59.99657 * 9 7 5 11 11 H 1.48504 * 109.47212 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47392 * 299.99842 * 9 7 5 13 13 C 1.40982 * 119.78082 * 0.54661 * 4 3 2 14 14 C 1.36202 * 119.88618 * 359.44976 * 13 4 3 15 15 C 1.40014 * 119.94469 * 179.97438 * 2 1 3 16 16 C 1.47761 * 119.89031 * 0.04594 * 15 2 1 17 17 C 1.39471 * 120.22498 * 244.70492 * 16 15 2 18 18 C 1.37959 * 119.99619 * 179.72019 * 17 16 15 19 19 C 1.38593 * 120.46711 * 0.55222 * 18 17 16 20 20 C 1.37976 * 120.45915 * 359.72660 * 19 18 17 21 21 C 1.39512 * 119.98436 * 359.97438 * 20 19 18 22 22 C 1.47468 * 120.22738 * 180.02562 * 21 20 19 23 23 O 1.21508 * 119.99806 * 179.97438 * 22 21 20 24 24 O 1.34760 * 120.00287 * 359.97438 * 22 21 20 25 25 H 1.08997 * 109.47139 * 270.02551 * 1 2 3 26 26 H 1.09002 * 109.47126 * 30.03008 * 1 2 3 27 27 H 1.09003 * 109.46745 * 150.02537 * 1 2 3 28 28 H 1.07997 * 120.06132 * 359.97012 * 3 2 1 29 29 H 0.97001 * 119.99572 * 180.02562 * 8 7 5 30 30 H 1.08000 * 120.06231 * 179.72372 * 13 4 3 31 31 H 1.07994 * 119.94749 * 180.25275 * 14 13 4 32 32 H 1.07998 * 120.00439 * 359.97252 * 17 16 15 33 33 H 1.08002 * 119.76926 * 180.29552 * 18 17 16 34 34 H 1.08006 * 119.76886 * 179.74102 * 19 18 17 35 35 H 1.08001 * 120.01053 * 179.97438 * 20 19 18 36 36 H 0.96701 * 117.00270 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5964 1.1792 0.0064 5 6 4.3048 2.3979 0.0127 6 1 5.3118 2.4393 -0.3755 7 6 3.7026 3.5555 0.5227 8 7 2.6527 3.4597 1.2959 9 14 4.3997 5.2356 0.0979 10 1 4.3612 5.4298 -1.3739 11 1 3.5875 6.2896 0.7572 12 1 5.8041 5.3232 0.5721 13 6 4.2954 -0.0451 0.0010 14 6 3.6065 -1.2201 0.0011 15 6 2.2059 -1.2132 0.0005 16 6 1.4634 -2.4907 0.0001 17 6 1.5550 -3.3565 1.0897 18 6 0.8552 -4.5454 1.0868 19 6 0.0673 -4.8944 0.0014 20 6 -0.0326 -4.0549 -1.0891 21 6 0.6621 -2.8451 -1.1036 22 6 0.5588 -1.9436 -2.2660 23 8 1.1652 -0.8907 -2.2741 24 8 -0.2082 -2.2875 -3.3194 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6470 2.1158 -0.0005 29 1 2.2355 4.2612 1.6488 30 1 5.3754 -0.0514 0.0014 31 1 4.1410 -2.1584 0.0012 32 1 2.1706 -3.0943 1.9375 33 1 0.9251 -5.2108 1.9346 34 1 -0.4724 -5.8299 0.0093 35 1 -0.6483 -4.3343 -1.9312 36 1 -0.2449 -1.6642 -4.0578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242879796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:58 Heat of formation + Delta-G solvation = -46.086813 kcal Electronic energy + Delta-G solvation = -21586.453638 eV Core-core repulsion = 18385.971028 eV Total energy + Delta-G solvation = -3200.482610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20341 -38.36412 -37.33169 -35.58578 -33.90535 -31.78726 -31.18755 -30.90935 -28.71940 -25.81880 -25.42977 -23.89468 -22.33590 -20.97664 -20.33927 -19.34125 -17.64733 -17.06384 -16.90128 -15.78337 -15.34873 -15.15448 -14.70279 -14.28812 -13.86987 -13.70952 -13.48127 -12.94303 -12.64012 -12.45473 -12.26582 -11.93872 -11.73001 -11.40516 -11.35929 -11.22859 -11.08830 -10.93983 -10.72411 -10.57249 -10.35749 -9.93802 -9.52756 -9.41352 -9.04598 -8.76252 -8.45463 -7.25874 -7.07775 -6.74930 -4.31550 1.04031 1.61282 2.77743 3.00647 3.05752 3.08795 3.22590 3.25341 3.42070 3.91839 4.12504 4.60001 5.08860 5.18344 5.20680 5.53183 5.62806 5.75450 5.82513 6.05965 6.14355 6.21215 6.30362 6.38056 6.49651 6.54457 6.65127 6.70801 6.83007 6.90901 6.98618 7.06212 7.15002 7.36328 7.42841 7.69431 7.94802 8.09527 8.19403 8.33560 8.40151 8.66553 8.90075 9.03437 10.15365 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.026319 B = 0.005015 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.614373 B = 5581.916010 C = 5988.845071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.008 4.008 3 C -0.165 4.165 4 C 0.124 3.876 5 C -0.456 4.456 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.785 5.785 9 Si 0.908 3.092 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.265 1.265 13 C -0.237 4.237 14 C -0.060 4.060 15 C -0.204 4.204 16 C 0.082 3.918 17 C -0.136 4.136 18 C -0.086 4.086 19 C -0.161 4.161 20 C -0.066 4.066 21 C -0.136 4.136 22 C 0.506 3.494 23 O -0.462 6.462 24 O -0.529 6.529 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.282 0.718 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 -10.286 -2.631 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.008 4.008 3 C -0.184 4.184 4 C 0.122 3.878 5 C -0.485 4.485 6 H 0.096 0.904 7 C -0.142 4.142 8 N -0.410 5.410 9 Si 0.732 3.268 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.189 1.189 13 C -0.256 4.256 14 C -0.079 4.079 15 C -0.205 4.205 16 C 0.082 3.918 17 C -0.154 4.154 18 C -0.104 4.104 19 C -0.179 4.179 20 C -0.084 4.084 21 C -0.137 4.137 22 C 0.348 3.652 23 O -0.347 6.347 24 O -0.341 6.341 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.008 -10.093 -2.143 11.940 hybrid contribution 0.238 1.156 -0.622 1.334 sum -5.770 -8.937 -2.765 10.991 Atomic orbital electron populations 1.20802 0.94596 1.00530 1.00115 1.18865 0.92993 0.92489 0.96490 1.20735 0.94129 0.95928 1.07624 1.17629 0.92032 0.91955 0.86204 1.19591 1.01108 0.92644 1.35176 0.90399 1.25965 0.94190 1.01497 0.92570 1.69799 1.17869 1.31684 1.21627 0.86375 0.79847 0.80528 0.80044 1.18757 1.20286 1.18933 1.20563 0.97492 0.92555 1.14993 1.20130 0.92198 0.96342 0.99209 1.17660 0.92251 0.89380 1.21204 1.19079 0.89857 0.93156 0.89748 1.21406 1.01203 0.94326 0.98489 1.21286 0.95207 0.96133 0.97753 1.20989 1.02033 1.00341 0.94542 1.21311 0.96607 0.92478 0.98039 1.19202 1.05211 0.95658 0.93629 1.20896 0.76621 0.85473 0.82198 1.91123 1.41344 1.23120 1.79142 1.84547 1.66320 1.53716 1.29562 0.93101 0.92960 0.93670 0.86671 0.90728 0.89123 0.89700 0.85266 0.86061 0.86069 0.85298 0.73629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 8.70 36.00 0.31 -1.87 16 2 C -0.01 -0.19 3.98 -104.68 -0.42 -0.61 16 3 C -0.16 -4.43 8.26 -39.28 -0.32 -4.76 16 4 C 0.12 3.41 5.57 -106.80 -0.60 2.82 16 5 C -0.46 -12.31 9.03 -37.85 -0.34 -12.65 16 6 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 7 C 0.08 1.94 5.13 -17.32 -0.09 1.85 16 8 N -0.79 -20.42 10.96 55.56 0.61 -19.81 16 9 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 10 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 13 C -0.24 -6.01 9.73 -39.28 -0.38 -6.39 16 14 C -0.06 -1.41 9.66 -39.63 -0.38 -1.80 16 15 C -0.20 -4.65 3.96 -104.65 -0.41 -5.07 16 16 C 0.08 1.57 4.63 -104.53 -0.48 1.08 16 17 C -0.14 -2.21 9.73 -39.22 -0.38 -2.59 16 18 C -0.09 -1.12 10.02 -39.55 -0.40 -1.51 16 19 C -0.16 -2.00 10.02 -39.55 -0.40 -2.39 16 20 C -0.07 -0.93 9.61 -39.20 -0.38 -1.31 16 21 C -0.14 -2.37 4.77 -104.65 -0.50 -2.87 16 22 C 0.51 9.09 6.77 34.49 0.23 9.32 16 23 O -0.46 -10.10 12.67 -19.27 -0.24 -10.34 16 24 O -0.53 -7.21 12.68 -40.66 -0.52 -7.73 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 27 H 0.04 0.88 4.30 -51.93 -0.22 0.66 16 28 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 29 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 30 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.13 1.55 7.61 -52.49 -0.40 1.15 16 36 H 0.41 3.83 9.11 45.56 0.42 4.24 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -30.61 306.70 -8.53 -39.14 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.04 Total: 9.09 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -4.93 Total: -28.74 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.76 Total: -18.07 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.61 -8.53 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242879796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.945 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds