Wall clock time and date at job start Tue Mar 31 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30951 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47156 * 269.99564 * 3 2 1 5 5 H 1.48500 * 109.47215 * 29.99676 * 3 2 1 6 6 H 1.48498 * 109.47346 * 149.99639 * 3 2 1 7 7 C 1.39812 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00178 * 197.38359 * 7 2 1 9 9 C 1.40687 * 119.99833 * 17.39104 * 7 2 1 10 10 C 1.40898 * 120.60446 * 24.78438 * 9 7 2 11 11 C 1.36158 * 119.99526 * 179.97438 * 10 9 7 12 12 C 1.39219 * 121.32847 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.37108 * 180.02562 * 12 11 10 14 14 C 1.37933 * 121.25594 * 359.74634 * 12 11 10 15 15 C 1.39660 * 119.88773 * 0.51046 * 14 12 11 16 16 C 1.47162 * 120.62992 * 179.77086 * 15 14 12 17 17 C 1.40399 * 126.54707 * 64.75045 * 16 15 14 18 18 N 1.30889 * 108.81449 * 179.97438 * 17 16 15 19 19 N 1.40004 * 109.56564 * 359.97438 * 18 17 16 20 20 C 1.36392 * 132.10193 * 180.02562 * 19 18 17 21 21 C 1.35235 * 120.66891 * 180.02562 * 20 19 18 22 22 C 1.40158 * 120.34651 * 359.97276 * 21 20 19 23 23 C 1.36576 * 119.45862 * 0.02562 * 22 21 20 24 24 C 1.36908 * 107.83712 * 359.75460 * 19 18 17 25 25 H 0.97008 * 119.99934 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00524 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.34174 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.05566 * 180.25819 * 14 12 11 29 29 H 1.07998 * 125.59107 * 359.97438 * 17 16 15 30 30 H 1.08000 * 119.66628 * 359.97438 * 20 19 18 31 31 H 1.08007 * 119.82521 * 179.97438 * 21 20 19 32 32 H 1.07998 * 120.26898 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.36652 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.4912 2.0463 -1.4001 5 1 1.4410 2.6527 0.7000 6 1 3.5411 1.4401 0.7001 7 6 2.0085 -1.2108 0.0005 8 1 3.0515 -1.2321 0.2800 9 6 1.3533 -2.4015 -0.3631 10 6 0.2191 -2.3698 -1.1985 11 6 -0.4052 -3.5297 -1.5430 12 6 0.0538 -4.7621 -1.0863 13 9 -0.5956 -5.8885 -1.4532 14 6 1.1624 -4.8555 -0.2709 15 6 1.8390 -3.6976 0.1190 16 6 3.0206 -3.7779 0.9926 17 6 4.2512 -4.3779 0.6815 18 7 5.0546 -4.2495 1.7068 19 7 4.3969 -3.5633 2.7348 20 6 4.7956 -3.1856 3.9832 21 6 3.9533 -2.5177 4.8038 22 6 2.6546 -2.2026 4.3813 23 6 2.2452 -2.5761 3.1330 24 6 3.1351 -3.2616 2.2973 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1547 -1.4255 -1.5662 27 1 -1.2734 -3.4931 -2.1843 28 1 1.5041 -5.8220 0.0689 29 1 4.4949 -4.8654 -0.2508 30 1 5.7938 -3.4230 4.3202 31 1 4.2832 -2.2255 5.7899 32 1 1.9829 -1.6696 5.0378 33 1 1.2478 -2.3406 2.7923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242960843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:58 Heat of formation + Delta-G solvation = 73.254376 kcal Electronic energy + Delta-G solvation = -21074.607925 eV Core-core repulsion = 17788.132784 eV Total energy + Delta-G solvation = -3286.475141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.42364 -41.35978 -37.30613 -36.53579 -33.73313 -32.62439 -30.31193 -30.07267 -29.41289 -27.14012 -24.99691 -23.33921 -22.37021 -21.70378 -20.85579 -19.58361 -17.43199 -16.78933 -16.29718 -15.85842 -15.50149 -15.21312 -15.00745 -14.45696 -14.20402 -14.13040 -14.07928 -13.11615 -12.82447 -12.46584 -12.15255 -12.00313 -11.80401 -11.40972 -11.37917 -11.29529 -11.09104 -10.87966 -10.48659 -10.19853 -10.13066 -9.72114 -9.51053 -9.28417 -8.85912 -7.71910 -7.36970 -7.02838 -6.65621 -4.45956 1.21744 1.56677 2.49223 2.75259 2.76238 2.96906 3.00823 3.07407 3.32428 3.78504 3.92447 4.40227 4.68949 5.09870 5.16072 5.26738 5.40156 5.62712 5.84835 5.88378 5.99326 6.08576 6.15630 6.22721 6.41126 6.54498 6.73205 6.86091 6.87292 7.02448 7.08914 7.15942 7.38993 7.40955 7.67660 7.82328 7.90566 8.08768 8.12728 8.43251 8.66207 8.78985 9.94483 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.008920 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.743148 B = 3138.203396 C = 4843.116644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.429 4.429 8 H 0.080 0.920 9 C 0.124 3.876 10 C -0.150 4.150 11 C -0.119 4.119 12 C -0.056 4.056 13 F -0.177 7.177 14 C -0.094 4.094 15 C -0.130 4.130 16 C -0.136 4.136 17 C 0.072 3.928 18 N -0.336 5.336 19 N -0.278 5.278 20 C 0.094 3.906 21 C -0.163 4.163 22 C -0.119 4.119 23 C -0.065 4.065 24 C 0.103 3.897 25 H 0.285 0.715 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.186 0.814 30 H 0.158 0.842 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -0.105 6.494 7.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.098 0.902 9 C 0.121 3.879 10 C -0.170 4.170 11 C -0.138 4.138 12 C -0.076 4.076 13 F -0.157 7.157 14 C -0.113 4.113 15 C -0.133 4.133 16 C -0.147 4.147 17 C -0.103 4.103 18 N -0.160 5.160 19 N -0.045 5.045 20 C -0.031 4.031 21 C -0.186 4.186 22 C -0.142 4.142 23 C -0.085 4.085 24 C -0.015 4.015 25 H 0.096 0.904 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.203 0.797 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.336 -0.310 6.834 8.676 hybrid contribution -0.558 0.840 -0.360 1.071 sum 4.778 0.530 6.474 8.064 Atomic orbital electron populations 1.69864 1.07508 1.29737 1.33363 1.25953 0.94746 1.01464 0.92186 0.86327 0.80648 0.80416 0.79669 1.18991 1.20040 1.18531 1.19413 0.98035 0.90649 1.37581 0.90162 1.18659 0.90452 0.90698 0.88094 1.20836 0.98869 0.96501 1.00745 1.20375 1.00122 0.91938 1.01374 1.17016 0.98794 0.81459 1.10283 1.91277 1.81630 1.51158 1.91596 1.20510 0.94955 0.97254 0.98565 1.18515 0.98163 0.92215 1.04415 1.18547 0.95673 1.07946 0.92525 1.24003 0.91417 0.97870 0.97054 1.77382 1.20283 1.21481 0.96829 1.45881 1.10624 1.37101 1.10898 1.21284 1.00558 0.99078 0.82221 1.20682 0.94626 1.02861 1.00404 1.21068 0.96017 1.00741 0.96400 1.20717 1.00135 0.95530 0.92089 1.19517 0.85897 1.00717 0.95322 0.90447 0.85583 0.88523 0.88171 0.79685 0.82484 0.83770 0.84929 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.24 10.96 55.54 0.61 -17.63 16 2 C 0.08 1.74 5.15 -17.34 -0.09 1.66 16 3 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.43 -10.38 8.35 -38.07 -0.32 -10.70 16 8 H 0.08 2.00 7.30 -52.49 -0.38 1.62 16 9 C 0.12 3.04 5.73 -104.61 -0.60 2.44 16 10 C -0.15 -3.65 8.64 -39.32 -0.34 -3.99 16 11 C -0.12 -2.75 9.88 -39.96 -0.40 -3.15 16 12 C -0.06 -1.30 7.27 -39.33 -0.29 -1.58 16 13 F -0.18 -4.02 17.24 2.25 0.04 -3.98 16 14 C -0.09 -2.11 9.76 -39.16 -0.38 -2.50 16 15 C -0.13 -3.00 5.94 -102.38 -0.61 -3.61 16 16 C -0.14 -2.89 4.67 -104.50 -0.49 -3.38 16 17 C 0.07 1.39 11.94 -17.14 -0.20 1.19 16 18 N -0.34 -6.49 12.59 30.74 0.39 -6.10 16 19 N -0.28 -5.14 3.87 -10.46 -0.04 -5.18 16 20 C 0.09 1.35 11.19 -16.59 -0.19 1.16 16 21 C -0.16 -2.05 9.98 -39.93 -0.40 -2.45 16 22 C -0.12 -1.71 10.09 -39.46 -0.40 -2.11 16 23 C -0.06 -1.18 10.08 -39.52 -0.40 -1.58 16 24 C 0.10 2.07 6.44 -83.98 -0.54 1.53 16 25 H 0.28 6.06 8.30 -40.82 -0.34 5.72 16 26 H 0.13 3.11 6.19 -52.48 -0.32 2.78 16 27 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.19 3.04 8.06 -52.49 -0.42 2.61 16 30 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -27.51 298.88 -7.97 -35.47 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -2.80 Total: 7.37 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -5.63 Total: -27.06 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.96 Total: -28.91 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.51 -7.97 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242960843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.726 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds