Wall clock time and date at job start Tue Mar 31 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 120.00345 * 2 1 4 4 H 1.48505 * 109.47061 * 240.00115 * 3 2 1 5 5 H 1.48496 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47305 * 120.00027 * 3 2 1 7 7 C 1.39878 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99955 * 197.68098 * 7 2 1 9 9 C 1.41320 * 120.00112 * 17.68009 * 7 2 1 10 10 C 1.40476 * 120.19644 * 24.77309 * 9 7 2 11 11 C 1.38791 * 119.64855 * 180.23174 * 10 9 7 12 12 C 1.48118 * 119.97899 * 179.77863 * 11 10 9 13 13 C 1.39793 * 126.43145 * 309.69889 * 12 11 10 14 14 N 1.31184 * 108.87955 * 180.02562 * 13 12 11 15 15 N 1.40017 * 109.32201 * 359.97438 * 14 13 12 16 16 C 1.36528 * 132.23183 * 179.97438 * 15 14 13 17 17 C 1.35012 * 120.66287 * 180.02562 * 16 15 14 18 18 C 1.40382 * 120.39353 * 359.97438 * 17 16 15 19 19 C 1.36251 * 119.53226 * 0.02562 * 18 17 16 20 20 C 1.37047 * 107.70666 * 0.02562 * 15 14 13 21 21 C 1.39994 * 120.04067 * 359.50032 * 11 10 9 22 22 C 1.38203 * 120.40634 * 0.27604 * 21 11 10 23 23 C 1.38099 * 120.35265 * 359.97438 * 22 21 11 24 24 F 1.35100 * 120.02811 * 180.02562 * 23 22 21 25 25 H 0.96998 * 120.00100 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.17960 * 359.97438 * 10 9 7 27 27 H 1.08001 * 125.55738 * 359.97438 * 13 12 11 28 28 H 1.08005 * 119.67151 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.80040 * 179.70391 * 17 16 15 30 30 H 1.07995 * 120.23075 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.37595 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.79883 * 180.25163 * 21 11 10 33 33 H 1.07994 * 119.82212 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2126 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0081 -1.2114 -0.0005 8 1 3.0499 -1.2336 0.2835 9 6 1.3515 -2.4062 -0.3728 10 6 0.2249 -2.3618 -1.2107 11 6 -0.4140 -3.5418 -1.5652 12 6 -1.6054 -3.5030 -2.4444 13 6 -2.7355 -2.6977 -2.2760 14 7 -3.5792 -2.9410 -3.2506 15 7 -3.0386 -3.9149 -4.0990 16 6 -3.5103 -4.5057 -5.2359 17 6 -2.7786 -5.4387 -5.8815 18 6 -1.5180 -5.8162 -5.3925 19 6 -1.0356 -5.2343 -4.2588 20 6 -1.8114 -4.2670 -3.6008 21 6 0.0704 -4.7690 -1.0971 22 6 1.1814 -4.8154 -0.2764 23 6 1.8268 -3.6510 0.0908 24 9 2.9126 -3.7040 0.8929 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1446 -1.4141 -1.5738 27 1 -2.8893 -1.9910 -1.4739 28 1 -4.4785 -4.2238 -5.6227 29 1 -3.1673 -5.9006 -6.7770 30 1 -0.9351 -6.5632 -5.9108 31 1 -0.0673 -5.5142 -3.8708 32 1 -0.4274 -5.6852 -1.3787 33 1 1.5468 -5.7672 0.0796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242965827.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:00 Heat of formation + Delta-G solvation = 70.902270 kcal Electronic energy + Delta-G solvation = -20629.147219 eV Core-core repulsion = 17342.570083 eV Total energy + Delta-G solvation = -3286.577136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.21055 -41.62648 -37.50205 -36.74672 -33.92104 -32.73204 -30.48622 -30.04002 -29.71215 -26.84008 -25.32560 -23.56992 -22.49439 -21.79928 -21.02934 -19.67388 -17.46764 -16.76673 -16.39635 -16.02771 -15.70353 -15.34249 -15.13260 -14.52875 -14.40974 -14.09642 -13.97216 -13.08059 -12.75810 -12.60495 -12.15660 -11.97503 -11.89177 -11.61793 -11.57635 -11.24746 -11.09635 -10.83853 -10.61363 -10.41473 -10.10756 -9.91308 -9.53177 -9.24733 -9.08478 -7.70960 -7.59980 -6.93720 -6.64621 -4.44091 0.94127 1.29697 2.49872 2.53611 2.75359 3.04387 3.06649 3.10748 3.23104 3.65359 3.88695 4.44096 4.52716 4.82985 4.90697 5.05184 5.28027 5.44386 5.63245 5.79113 5.89343 5.92605 5.96071 6.17874 6.23506 6.40463 6.49288 6.58327 6.86711 6.92665 7.08054 7.14643 7.17875 7.48317 7.57243 7.85671 7.92915 7.95388 8.07535 8.48859 8.70588 8.79817 10.08326 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.005295 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.413569 B = 5287.122181 C = 6259.086736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.087 3.913 10 C -0.128 4.128 11 C -0.008 4.008 12 C -0.167 4.167 13 C 0.093 3.907 14 N -0.329 5.329 15 N -0.281 5.281 16 C 0.106 3.894 17 C -0.170 4.170 18 C -0.106 4.106 19 C -0.090 4.090 20 C 0.094 3.906 21 C -0.206 4.206 22 C -0.121 4.121 23 C -0.031 4.031 24 F -0.165 7.165 25 H 0.284 0.716 26 H 0.128 0.872 27 H 0.196 0.804 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.095 0.905 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 -6.470 -9.476 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.084 3.916 10 C -0.147 4.147 11 C -0.009 4.009 12 C -0.178 4.178 13 C -0.083 4.083 14 N -0.152 5.152 15 N -0.048 5.048 16 C -0.020 4.020 17 C -0.192 4.192 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.024 4.024 21 C -0.226 4.226 22 C -0.140 4.140 23 C -0.051 4.051 24 F -0.144 7.144 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.212 0.788 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.114 0.886 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.347 -5.883 -9.833 13.099 hybrid contribution 1.197 0.531 0.530 1.412 sum -5.150 -5.352 -9.303 11.905 Atomic orbital electron populations 1.69799 1.07572 1.29664 1.34305 1.25878 0.94772 1.01395 0.92050 0.86302 0.80160 0.79830 0.80163 1.18707 1.20198 1.18837 1.19467 0.98376 0.90947 1.39485 0.89952 1.17517 0.92526 0.90900 0.90656 1.21240 0.97648 0.96402 0.99441 1.17700 0.92613 0.93740 0.96897 1.18998 0.98315 1.02694 0.97766 1.24070 0.90742 0.97455 0.96082 1.77634 1.22615 1.09211 1.05732 1.46066 1.13340 1.27364 1.18038 1.21364 1.00159 0.94835 0.85595 1.20714 0.96159 1.00104 1.02245 1.21072 0.95730 1.00021 0.96036 1.20684 1.00294 0.94878 0.95143 1.19468 0.87487 0.99161 0.96262 1.20180 1.00108 0.95612 1.06691 1.20384 0.97346 0.95641 1.00672 1.17932 0.90881 0.94787 1.01522 1.91266 1.53395 1.97315 1.72395 0.90540 0.85430 0.78757 0.82141 0.83469 0.84659 0.83461 0.88635 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.56 10.96 55.54 0.61 -18.95 16 2 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.45 -12.02 8.77 -37.80 -0.33 -12.35 16 8 H 0.08 2.16 7.73 -52.49 -0.41 1.76 16 9 C 0.09 2.30 5.57 -106.80 -0.60 1.71 16 10 C -0.13 -3.17 8.35 -38.53 -0.32 -3.50 16 11 C -0.01 -0.18 5.75 -104.98 -0.60 -0.78 16 12 C -0.17 -3.37 5.64 -104.55 -0.59 -3.95 16 13 C 0.09 1.78 11.85 -17.25 -0.20 1.58 16 14 N -0.33 -6.08 12.62 30.67 0.39 -5.69 16 15 N -0.28 -4.71 3.89 -10.52 -0.04 -4.75 16 16 C 0.11 1.30 11.19 -16.61 -0.19 1.12 16 17 C -0.17 -1.71 9.98 -39.92 -0.40 -2.11 16 18 C -0.11 -1.18 10.08 -39.49 -0.40 -1.58 16 19 C -0.09 -1.32 9.99 -39.49 -0.39 -1.71 16 20 C 0.09 1.67 6.72 -84.02 -0.56 1.10 16 21 C -0.21 -4.41 9.53 -38.94 -0.37 -4.78 16 22 C -0.12 -2.71 9.99 -39.65 -0.40 -3.11 16 23 C -0.03 -0.78 7.31 -38.55 -0.28 -1.06 16 24 F -0.16 -4.15 16.70 2.25 0.04 -4.11 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.13 3.27 6.17 -52.48 -0.32 2.95 16 27 H 0.20 3.48 8.06 -52.49 -0.42 3.05 16 28 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.15 2.08 7.95 -52.49 -0.42 1.66 16 32 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -29.26 299.43 -8.07 -37.33 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -2.82 Total: 5.82 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -5.73 Total: -27.60 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.95 Total: -29.39 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.26 -8.07 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242965827.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.229 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds