Wall clock time and date at job start Tue Mar 31 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 120.00345 * 2 1 4 4 H 1.48505 * 109.47061 * 240.00115 * 3 2 1 5 5 H 1.48496 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47305 * 120.00027 * 3 2 1 7 7 C 1.39878 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99955 * 197.68098 * 7 2 1 9 9 C 1.41320 * 120.00112 * 17.68009 * 7 2 1 10 10 C 1.40476 * 120.19644 * 24.77309 * 9 7 2 11 11 C 1.38791 * 119.64855 * 180.23174 * 10 9 7 12 12 C 1.48118 * 119.97899 * 179.77863 * 11 10 9 13 13 C 1.39793 * 126.43145 * 309.69889 * 12 11 10 14 14 N 1.31184 * 108.87955 * 180.02562 * 13 12 11 15 15 N 1.40017 * 109.32201 * 359.97438 * 14 13 12 16 16 C 1.36528 * 132.23183 * 179.97438 * 15 14 13 17 17 C 1.35012 * 120.66287 * 180.02562 * 16 15 14 18 18 C 1.40382 * 120.39353 * 359.97438 * 17 16 15 19 19 C 1.36251 * 119.53226 * 0.02562 * 18 17 16 20 20 C 1.37047 * 107.70666 * 0.02562 * 15 14 13 21 21 C 1.39994 * 120.04067 * 359.50032 * 11 10 9 22 22 C 1.38203 * 120.40634 * 0.27604 * 21 11 10 23 23 C 1.38099 * 120.35265 * 359.97438 * 22 21 11 24 24 F 1.35100 * 120.02811 * 180.02562 * 23 22 21 25 25 H 0.96998 * 120.00100 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.17960 * 359.97438 * 10 9 7 27 27 H 1.08001 * 125.55738 * 359.97438 * 13 12 11 28 28 H 1.08005 * 119.67151 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.80040 * 179.70391 * 17 16 15 30 30 H 1.07995 * 120.23075 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.37595 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.79883 * 180.25163 * 21 11 10 33 33 H 1.07994 * 119.82212 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2126 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0081 -1.2114 -0.0005 8 1 3.0499 -1.2336 0.2835 9 6 1.3515 -2.4062 -0.3728 10 6 0.2249 -2.3618 -1.2107 11 6 -0.4140 -3.5418 -1.5652 12 6 -1.6054 -3.5030 -2.4444 13 6 -2.7355 -2.6977 -2.2760 14 7 -3.5792 -2.9410 -3.2506 15 7 -3.0386 -3.9149 -4.0990 16 6 -3.5103 -4.5057 -5.2359 17 6 -2.7786 -5.4387 -5.8815 18 6 -1.5180 -5.8162 -5.3925 19 6 -1.0356 -5.2343 -4.2588 20 6 -1.8114 -4.2670 -3.6008 21 6 0.0704 -4.7690 -1.0971 22 6 1.1814 -4.8154 -0.2764 23 6 1.8268 -3.6510 0.0908 24 9 2.9126 -3.7040 0.8929 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1446 -1.4141 -1.5738 27 1 -2.8893 -1.9910 -1.4739 28 1 -4.4785 -4.2238 -5.6227 29 1 -3.1673 -5.9006 -6.7770 30 1 -0.9351 -6.5632 -5.9108 31 1 -0.0673 -5.5142 -3.8708 32 1 -0.4274 -5.6852 -1.3787 33 1 1.5468 -5.7672 0.0796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242965827.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:00 Heat of formation + Delta-G solvation = 56.061021 kcal Electronic energy + Delta-G solvation = -20629.790784 eV Core-core repulsion = 17342.570083 eV Total energy + Delta-G solvation = -3287.220701 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.15836 -42.87687 -39.18582 -37.98366 -35.73032 -34.03913 -31.85699 -31.49196 -31.42078 -28.28425 -27.19665 -24.64864 -23.79710 -23.46615 -22.67693 -21.22921 -19.20597 -18.08716 -17.92706 -17.51647 -17.03783 -16.75837 -16.53522 -16.15863 -15.93271 -15.76884 -15.47543 -14.65150 -14.41256 -14.14153 -13.75963 -13.46391 -13.38482 -13.08761 -12.87921 -12.70416 -12.64184 -12.47403 -12.18793 -11.97244 -11.59423 -11.43471 -11.26896 -11.06700 -10.26649 -9.48963 -9.32733 -8.72754 -8.14464 -6.40446 -0.12484 0.14586 0.75077 0.94909 1.36227 1.38782 1.46482 1.49564 1.78986 2.18704 2.50433 2.69676 3.31110 3.54377 3.74367 3.97556 4.06883 4.10544 4.24841 4.30224 4.49185 4.56785 4.69761 4.76617 4.85722 5.02687 5.16892 5.21227 5.30106 5.36786 5.44868 5.55987 5.71295 5.75550 5.99694 6.04075 6.10413 6.19723 6.55288 6.62703 6.79266 6.90240 8.26672 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.005295 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.413569 B = 5287.122181 C = 6259.086736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.041 3.959 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.070 0.930 9 C 0.060 3.940 10 C -0.149 4.149 11 C 0.007 3.993 12 C -0.225 4.225 13 C 0.083 3.917 14 N -0.352 5.352 15 N -0.280 5.280 16 C 0.082 3.918 17 C -0.144 4.144 18 C -0.067 4.067 19 C -0.132 4.132 20 C 0.102 3.898 21 C -0.197 4.197 22 C -0.115 4.115 23 C -0.067 4.067 24 F -0.172 7.172 25 H 0.292 0.708 26 H 0.110 0.890 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.202 0.798 30 H 0.180 0.820 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 -8.557 -12.649 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.088 0.912 9 C 0.057 3.943 10 C -0.169 4.169 11 C 0.006 3.994 12 C -0.237 4.237 13 C -0.092 4.092 14 N -0.176 5.176 15 N -0.047 5.047 16 C -0.042 4.042 17 C -0.165 4.165 18 C -0.090 4.090 19 C -0.152 4.152 20 C -0.017 4.017 21 C -0.217 4.217 22 C -0.133 4.133 23 C -0.087 4.087 24 F -0.151 7.151 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.206 0.794 28 H 0.209 0.791 29 H 0.219 0.781 30 H 0.198 0.802 31 H 0.165 0.835 32 H 0.142 0.858 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.435 -7.982 -13.005 16.974 hybrid contribution 1.368 0.882 1.195 2.019 sum -6.067 -7.100 -11.810 15.056 Atomic orbital electron populations 1.69845 1.08748 1.30935 1.34322 1.26670 0.95562 1.04237 0.91095 0.85269 0.78927 0.75633 0.80054 1.18476 1.18592 1.18556 1.19625 0.98225 0.92534 1.42089 0.91165 1.17864 0.93418 0.91668 0.91307 1.21139 0.98230 0.96881 1.00682 1.17908 0.92552 0.93154 0.95833 1.18851 0.98446 1.06215 1.00155 1.23986 0.91130 0.97516 0.96518 1.77539 1.22897 1.10880 1.06305 1.46367 1.12946 1.26718 1.18650 1.22309 1.02132 0.95329 0.84449 1.21455 0.94795 0.97696 1.02577 1.21720 0.95743 0.98088 0.93481 1.20867 1.00799 0.96144 0.97344 1.19703 0.87991 0.98645 0.95397 1.20512 0.99447 0.96370 1.05336 1.20702 0.96900 0.95873 0.99865 1.18242 0.91785 0.95663 1.03005 1.91225 1.53786 1.97369 1.72727 0.89748 0.87201 0.79379 0.79122 0.78093 0.80241 0.83540 0.85763 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.51 10.96 21.82 0.24 -42.27 16 2 C 0.04 2.09 5.14 85.23 0.44 2.53 16 3 Si 0.98 39.18 29.59 68.60 2.03 41.21 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.50 -27.97 8.77 23.43 0.21 -27.76 16 8 H 0.07 3.96 7.73 -2.91 -0.02 3.93 16 9 C 0.06 3.38 5.57 -21.28 -0.12 3.27 16 10 C -0.15 -7.92 8.35 22.95 0.19 -7.73 16 11 C 0.01 0.33 5.75 -20.10 -0.12 0.21 16 12 C -0.23 -9.38 5.64 -19.82 -0.11 -9.49 16 13 C 0.08 3.38 11.85 85.17 1.01 4.39 16 14 N -0.35 -13.18 12.62 -56.89 -0.72 -13.89 16 15 N -0.28 -8.95 3.89 -187.20 -0.73 -9.68 16 16 C 0.08 1.67 11.19 83.22 0.93 2.60 16 17 C -0.14 -1.95 9.98 22.05 0.22 -1.73 16 18 C -0.07 -1.10 10.08 22.33 0.23 -0.88 16 19 C -0.13 -3.47 9.99 22.33 0.22 -3.25 16 20 C 0.10 3.53 6.72 39.31 0.26 3.79 16 21 C -0.20 -8.43 9.53 22.69 0.22 -8.21 16 22 C -0.11 -5.14 9.99 22.23 0.22 -4.92 16 23 C -0.07 -3.52 7.31 22.93 0.17 -3.35 16 24 F -0.17 -9.06 16.70 44.97 0.75 -8.31 16 25 H 0.29 13.73 8.30 -92.71 -0.77 12.97 16 26 H 0.11 6.10 6.17 -2.91 -0.02 6.08 16 27 H 0.19 7.42 8.06 -2.91 -0.02 7.39 16 28 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 30 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 3.83 7.95 -2.91 -0.02 3.81 16 32 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -69.80 299.43 6.69 -63.11 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 1.15 Total: 20.37 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.97 Total: -50.53 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -1.21 Total: -65.85 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.75 Total: -8.31 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -69.80 6.69 -63.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242965827.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.168 kcal (2) G-P(sol) polarization free energy of solvation -69.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds