Wall clock time and date at job start Tue Mar 31 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30944 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47022 * 120.00255 * 3 2 1 6 6 H 1.48494 * 109.47342 * 240.00498 * 3 2 1 7 7 C 1.39832 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00401 * 204.67473 * 7 2 1 9 9 C 1.40665 * 120.00408 * 24.67839 * 7 2 1 10 10 C 1.41151 * 120.63511 * 35.24111 * 9 7 2 11 11 F 1.35096 * 120.10486 * 0.02562 * 10 9 7 12 12 C 1.37458 * 119.78570 * 179.72617 * 10 9 7 13 13 C 1.38873 * 121.19767 * 0.59183 * 12 10 9 14 14 C 1.37691 * 121.35893 * 359.68860 * 13 12 10 15 15 C 1.39671 * 120.08887 * 359.97438 * 14 13 12 16 16 C 1.47180 * 120.57566 * 179.97438 * 15 14 13 17 17 C 1.40386 * 126.54166 * 65.04964 * 16 15 14 18 18 N 1.30906 * 108.81221 * 179.97438 * 17 16 15 19 19 N 1.40006 * 109.56452 * 0.02562 * 18 17 16 20 20 C 1.36394 * 132.10835 * 180.02562 * 19 18 17 21 21 C 1.35219 * 120.67175 * 179.97438 * 20 19 18 22 22 C 1.40162 * 120.34714 * 359.97118 * 21 20 19 23 23 C 1.36575 * 119.46285 * 0.02562 * 22 21 20 24 24 C 1.36917 * 107.83259 * 359.72455 * 19 18 17 25 25 H 0.96993 * 120.00130 * 185.62746 * 1 2 3 26 26 H 1.07998 * 119.39789 * 180.30356 * 12 10 9 27 27 H 1.07997 * 119.31853 * 179.71339 * 13 12 10 28 28 H 1.07991 * 119.95268 * 180.02562 * 14 13 12 29 29 H 1.07996 * 125.59507 * 359.97438 * 17 16 15 30 30 H 1.08001 * 119.65834 * 359.97072 * 20 19 18 31 31 H 1.08002 * 119.82983 * 179.97438 * 21 20 19 32 32 H 1.08005 * 120.26943 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.36824 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 1.2785 2.7465 0.0006 5 1 3.0973 1.6963 1.2125 6 1 3.0971 1.6965 -1.2125 7 6 2.0086 -1.2110 -0.0005 8 1 3.0147 -1.2539 0.3899 9 6 1.4017 -2.3734 -0.5097 10 6 0.5250 -2.3025 -1.6136 11 9 0.2606 -1.1114 -2.1936 12 6 -0.0541 -3.4502 -2.1004 13 6 0.1970 -4.6856 -1.5180 14 6 1.0395 -4.8096 -0.4359 15 6 1.6629 -3.6801 0.0992 16 6 2.5649 -3.8003 1.2560 17 6 3.7949 -4.4762 1.2902 18 7 4.3057 -4.3628 2.4901 19 7 3.4426 -3.6128 3.2981 20 6 3.5197 -3.2220 4.6026 21 6 2.5332 -2.4853 5.1614 22 6 1.4139 -2.1109 4.4054 23 6 1.3266 -2.4968 3.0982 24 6 2.3618 -3.2546 2.5376 25 1 -0.4850 -0.8359 0.0824 26 1 -0.7201 -3.3893 -2.9484 27 1 -0.2779 -5.5672 -1.9224 28 1 1.2190 -5.7816 -0.0010 29 1 4.2458 -5.0032 0.4624 30 1 4.3775 -3.5041 5.1951 31 1 2.6080 -2.1837 6.1958 32 1 0.6264 -1.5228 4.8532 33 1 0.4704 -2.2168 2.5023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242967292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:02 Heat of formation + Delta-G solvation = 60.933379 kcal Electronic energy + Delta-G solvation = -21455.736175 eV Core-core repulsion = 18168.726755 eV Total energy + Delta-G solvation = -3287.009420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.16255 -42.77787 -38.99994 -37.91799 -35.74076 -34.05865 -31.82309 -31.46504 -31.01169 -28.55633 -26.80720 -24.65572 -23.94798 -23.15617 -22.71505 -21.21833 -19.76449 -18.27584 -17.60529 -17.23462 -16.99609 -16.60043 -16.48760 -16.26672 -15.90653 -15.72283 -15.51329 -14.92379 -14.43128 -14.17250 -14.01737 -13.49885 -13.11729 -12.92033 -12.79145 -12.69572 -12.45566 -12.39630 -12.13061 -11.96961 -11.69666 -11.32886 -11.19612 -10.77228 -10.21409 -9.49647 -9.27517 -9.14128 -8.19414 -6.41292 -0.10384 0.21375 0.67297 0.86384 1.43168 1.43736 1.56389 1.71414 1.80830 2.28768 2.55353 2.69363 3.28923 3.43057 3.81165 3.96561 4.01000 4.14862 4.25109 4.27178 4.44514 4.58514 4.66912 4.76610 4.78427 4.94892 5.11709 5.21011 5.39992 5.44558 5.50844 5.55128 5.70376 5.76781 5.94681 5.99491 6.04931 6.08367 6.33016 6.66924 6.77808 6.88111 8.06809 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.008592 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.960883 B = 3258.203088 C = 4467.041152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.011 3.989 3 Si 1.100 2.900 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.059 3.941 10 C -0.054 4.054 11 F -0.165 7.165 12 C -0.122 4.122 13 C -0.213 4.213 14 C -0.082 4.082 15 C -0.108 4.108 16 C -0.194 4.194 17 C 0.075 3.925 18 N -0.351 5.351 19 N -0.281 5.281 20 C 0.083 3.917 21 C -0.146 4.146 22 C -0.084 4.084 23 C -0.116 4.116 24 C 0.103 3.897 25 H 0.277 0.723 26 H 0.118 0.882 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.206 0.794 30 H 0.197 0.803 31 H 0.202 0.798 32 H 0.165 0.835 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 -3.835 9.778 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.207 4.207 3 Si 0.919 3.081 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.055 3.945 10 C -0.075 4.075 11 F -0.144 7.144 12 C -0.142 4.142 13 C -0.232 4.232 14 C -0.100 4.100 15 C -0.110 4.110 16 C -0.205 4.205 17 C -0.100 4.100 18 N -0.175 5.175 19 N -0.047 5.047 20 C -0.041 4.041 21 C -0.167 4.167 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.016 4.016 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.222 0.778 30 H 0.214 0.786 31 H 0.219 0.781 32 H 0.183 0.817 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.022 -2.551 10.368 11.409 hybrid contribution -0.774 -1.236 -1.214 1.897 sum 3.248 -3.786 9.154 10.425 Atomic orbital electron populations 1.70555 1.08586 1.32571 1.30170 1.27965 0.95590 1.06602 0.90576 0.83200 0.75100 0.71190 0.78634 1.19139 1.18491 1.19699 1.20052 1.01948 0.94172 1.38022 0.92207 1.18987 0.91332 0.93918 0.90219 1.18075 1.09845 0.80673 0.98870 1.91312 1.93363 1.45928 1.83821 1.20814 1.00435 0.92192 1.00711 1.20358 1.05900 0.96013 1.00957 1.21030 0.96098 0.96943 0.95965 1.18937 1.03582 0.92050 0.96445 1.18587 0.99017 1.10399 0.92542 1.24227 0.93045 0.97493 0.95202 1.77314 1.15946 1.20579 1.03618 1.46207 1.14465 1.34561 1.09497 1.22280 1.02767 0.98258 0.80801 1.21345 0.92581 0.99712 1.03095 1.21619 0.99348 0.97509 0.92258 1.20535 0.97643 0.98809 0.96624 1.19632 0.90369 0.99239 0.92319 0.91160 0.86436 0.84816 0.85897 0.77761 0.78615 0.78150 0.81717 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.57 11.96 21.81 0.26 -43.31 16 2 C 0.01 0.55 4.36 85.21 0.37 0.93 16 3 Si 1.10 45.73 30.00 68.60 2.06 47.79 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.51 -27.75 8.05 23.25 0.19 -27.56 16 8 H 0.06 3.34 7.70 -2.91 -0.02 3.32 16 9 C 0.06 3.13 5.22 -19.81 -0.10 3.02 16 10 C -0.05 -2.87 6.14 22.80 0.14 -2.73 16 11 F -0.17 -9.26 14.34 44.97 0.64 -8.62 16 12 C -0.12 -5.55 9.94 22.24 0.22 -5.33 16 13 C -0.21 -8.61 9.97 22.29 0.22 -8.39 16 14 C -0.08 -3.41 9.78 22.49 0.22 -3.19 16 15 C -0.11 -5.06 5.94 -18.42 -0.11 -5.17 16 16 C -0.19 -8.47 4.81 -19.79 -0.10 -8.57 16 17 C 0.08 2.91 11.94 85.35 1.02 3.93 16 18 N -0.35 -13.25 12.59 -56.65 -0.71 -13.96 16 19 N -0.28 -10.07 3.87 -187.02 -0.72 -10.79 16 20 C 0.08 2.10 11.19 83.29 0.93 3.04 16 21 C -0.15 -3.01 9.98 22.04 0.22 -2.79 16 22 C -0.08 -2.25 10.09 22.35 0.23 -2.03 16 23 C -0.12 -4.37 10.08 22.31 0.22 -4.15 16 24 C 0.10 4.22 6.52 39.40 0.26 4.48 16 25 H 0.28 15.77 7.01 -92.71 -0.65 15.12 16 26 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 27 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.12 4.41 8.06 -2.92 -0.02 4.39 16 29 H 0.21 6.60 8.06 -2.91 -0.02 6.58 16 30 H 0.20 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -67.77 297.26 6.72 -61.06 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.26 Total: 22.35 kcal Atomic # 6 Polarization: -58.44 SS G_CDS: 3.93 Total: -54.51 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.18 Total: -68.07 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.64 Total: -8.62 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.06 Total: 47.79 kcal Total: -67.77 6.72 -61.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242967292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.988 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds