Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48506 * 109.46971 * 240.00088 * 3 2 1 5 5 H 1.48498 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47256 * 120.00273 * 3 2 1 7 7 C 1.39859 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99780 * 197.78753 * 7 2 1 9 9 C 1.41333 * 120.00151 * 17.77691 * 7 2 1 10 10 C 1.40894 * 120.15003 * 204.45346 * 9 7 2 11 11 C 1.37605 * 120.04594 * 180.02562 * 10 9 7 12 12 C 1.38692 * 120.36109 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.85901 * 179.97438 * 12 11 10 14 14 C 1.40183 * 120.29470 * 0.02562 * 12 11 10 15 15 C 1.48116 * 120.02471 * 179.97438 * 14 12 11 16 16 C 1.39786 * 126.43173 * 245.02120 * 15 14 12 17 17 N 1.31177 * 108.88247 * 179.97438 * 16 15 14 18 18 N 1.40017 * 109.32326 * 359.97438 * 17 16 15 19 19 C 1.36530 * 132.23609 * 180.02562 * 18 17 16 20 20 C 1.35020 * 120.66396 * 179.25115 * 19 18 17 21 21 C 1.40380 * 120.38990 * 0.63970 * 20 19 18 22 22 C 1.36255 * 119.53597 * 359.60038 * 21 20 19 23 23 C 1.37052 * 107.70388 * 359.75365 * 18 17 16 24 24 C 1.38779 * 119.94724 * 0.24726 * 14 12 11 25 25 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.97533 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.82372 * 179.97438 * 11 10 9 28 28 H 1.08008 * 125.56131 * 359.97438 * 16 15 14 29 29 H 1.08006 * 119.67041 * 359.97438 * 19 18 17 30 30 H 1.07995 * 119.80386 * 180.26238 * 20 19 18 31 31 H 1.07996 * 120.23100 * 179.62458 * 21 20 19 32 32 H 1.07997 * 120.37584 * 179.97438 * 22 21 20 33 33 H 1.07993 * 120.17733 * 179.70091 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0081 -1.2112 -0.0005 8 1 3.0494 -1.2336 0.2852 9 6 1.3521 -2.4058 -0.3748 10 6 1.8279 -3.6490 0.0871 11 6 1.1879 -4.8108 -0.2790 12 6 0.0727 -4.7673 -1.1025 13 9 -0.5475 -5.9142 -1.4560 14 6 -0.4132 -3.5385 -1.5705 15 6 -1.6042 -3.4990 -2.4501 16 6 -1.6387 -3.0771 -3.7824 17 7 -2.8670 -3.1849 -4.2301 18 7 -3.6894 -3.6820 -3.2118 19 6 -5.0231 -3.9705 -3.1680 20 6 -5.5842 -4.4644 -2.0435 21 6 -4.8051 -4.6768 -0.8953 22 6 -3.4737 -4.3886 -0.9242 23 6 -2.9065 -3.8842 -2.1052 24 6 0.2260 -2.3595 -1.2137 25 1 -0.4850 0.8400 0.0004 26 1 2.6954 -3.6900 0.7289 27 1 1.5558 -5.7618 0.0768 28 1 -0.7921 -2.7205 -4.3505 29 1 -5.6334 -3.8129 -4.0451 30 1 -6.6399 -4.6916 -2.0256 31 1 -5.2578 -5.0662 0.0046 32 1 -2.8616 -4.5464 -0.0485 33 1 -0.1423 -1.4111 -1.5761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242968063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = 72.738343 kcal Electronic energy + Delta-G solvation = -20898.084489 eV Core-core repulsion = 17611.586970 eV Total energy + Delta-G solvation = -3286.497518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.41609 -41.54372 -37.46887 -36.74575 -33.73563 -32.78673 -30.46436 -30.27784 -29.37257 -27.03179 -25.05119 -23.50892 -22.50893 -21.87572 -20.92020 -19.74170 -17.47575 -16.70672 -16.39167 -16.04639 -15.61214 -15.43873 -15.12904 -14.47141 -14.44224 -14.12925 -14.00662 -13.08232 -12.89343 -12.53067 -12.00966 -11.96939 -11.91522 -11.60325 -11.52753 -11.21384 -11.11242 -10.94353 -10.55693 -10.24644 -10.20588 -9.86723 -9.55140 -9.18239 -9.02110 -7.76237 -7.38619 -6.90625 -6.82669 -4.42704 1.03303 1.38567 2.52677 2.58604 2.75995 3.03561 3.04498 3.09510 3.18903 3.71487 3.87089 4.42522 4.54161 4.91499 4.96349 5.11700 5.36487 5.48956 5.68528 5.76515 5.84815 5.93213 6.00531 6.15586 6.30059 6.50374 6.63260 6.65961 6.89904 6.96842 7.04696 7.14504 7.21627 7.40414 7.66106 7.80708 7.92133 7.94584 8.13333 8.47783 8.76583 8.80760 10.09111 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.005675 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.001192 B = 4932.709690 C = 5667.161313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.204 4.204 11 C -0.119 4.119 12 C -0.033 4.033 13 F -0.170 7.170 14 C -0.027 4.027 15 C -0.169 4.169 16 C 0.088 3.912 17 N -0.329 5.329 18 N -0.278 5.278 19 C 0.102 3.898 20 C -0.167 4.167 21 C -0.106 4.106 22 C -0.083 4.083 23 C 0.106 3.894 24 C -0.123 4.123 25 H 0.283 0.717 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.191 0.809 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -4.056 -2.204 9.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.100 3.900 10 C -0.224 4.224 11 C -0.138 4.138 12 C -0.053 4.053 13 F -0.149 7.149 14 C -0.029 4.029 15 C -0.180 4.180 16 C -0.088 4.088 17 N -0.153 5.153 18 N -0.045 5.045 19 C -0.023 4.023 20 C -0.189 4.189 21 C -0.129 4.129 22 C -0.103 4.103 23 C -0.012 4.012 24 C -0.142 4.142 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.208 0.792 29 H 0.179 0.821 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.759 -3.693 -3.340 10.075 hybrid contribution 0.721 0.490 0.712 1.125 sum -8.039 -3.203 -2.628 9.044 Atomic orbital electron populations 1.69823 1.07556 1.29605 1.34357 1.25920 0.94740 1.01427 0.92205 0.86351 0.80153 0.80112 0.80080 1.18695 1.20328 1.18936 1.19516 0.98190 0.91041 1.39902 0.90124 1.17567 0.91188 0.92236 0.89056 1.20881 1.03483 0.91993 1.06048 1.20433 0.95744 0.98139 0.99500 1.17345 0.98600 0.80314 1.09030 1.91280 1.82882 1.48974 1.91792 1.17699 0.94015 0.92418 0.98739 1.18763 0.91775 1.12576 0.94892 1.23899 0.94555 0.96260 0.94073 1.77576 1.01999 1.26416 1.09307 1.46012 1.06650 1.41977 1.09883 1.21350 0.81183 0.99252 1.00491 1.20718 1.01068 1.04567 0.92524 1.21061 0.93416 0.99822 0.98593 1.20645 0.95263 0.98021 0.96343 1.19425 0.91561 1.01502 0.88683 1.21338 0.98004 0.95520 0.99349 0.90614 0.88037 0.88112 0.79210 0.82111 0.83406 0.84613 0.83736 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.96 55.54 0.61 -19.07 16 2 C 0.08 1.82 5.13 -17.35 -0.09 1.73 16 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.49 9.04 -37.80 -0.34 -11.83 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.10 2.59 5.57 -106.86 -0.60 1.99 16 10 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 11 C -0.12 -2.66 9.99 -39.64 -0.40 -3.05 16 12 C -0.03 -0.76 7.30 -38.68 -0.28 -1.05 16 13 F -0.17 -3.86 16.81 2.25 0.04 -3.83 16 14 C -0.03 -0.62 5.74 -104.91 -0.60 -1.22 16 15 C -0.17 -3.65 5.21 -104.56 -0.55 -4.19 16 16 C 0.09 1.73 11.92 -17.25 -0.21 1.52 16 17 N -0.33 -6.34 12.62 30.67 0.39 -5.95 16 18 N -0.28 -5.04 3.89 -10.52 -0.04 -5.08 16 19 C 0.10 1.39 11.19 -16.60 -0.19 1.20 16 20 C -0.17 -1.91 9.98 -39.92 -0.40 -2.30 16 21 C -0.11 -1.38 10.08 -39.49 -0.40 -1.78 16 22 C -0.08 -1.42 10.08 -39.49 -0.40 -1.82 16 23 C 0.11 2.10 6.79 -84.02 -0.57 1.53 16 24 C -0.12 -3.06 8.41 -38.53 -0.32 -3.39 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.19 3.20 8.06 -52.48 -0.42 2.78 16 29 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 2.51 8.06 -52.49 -0.42 2.08 16 33 H 0.13 3.32 6.17 -52.49 -0.32 3.00 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -29.10 300.18 -8.06 -37.16 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -2.83 Total: 7.13 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -5.71 Total: -27.81 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.96 Total: -30.11 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.10 -8.06 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242968063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.896 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds