Wall clock time and date at job start Tue Mar 31 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30942 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48496 * 109.47578 * 239.99697 * 3 2 1 5 5 H 1.48495 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47199 * 119.99618 * 3 2 1 7 7 C 1.39805 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00079 * 197.40701 * 7 2 1 9 9 C 1.40699 * 119.99771 * 17.40371 * 7 2 1 10 10 C 1.40848 * 120.61631 * 24.73899 * 9 7 2 11 11 C 1.36399 * 119.94850 * 180.02562 * 10 9 7 12 12 F 1.35096 * 119.33901 * 179.97438 * 11 10 9 13 13 C 1.39200 * 121.31694 * 359.97438 * 11 10 9 14 14 C 1.37600 * 121.29948 * 359.74356 * 13 11 10 15 15 C 1.39791 * 119.92488 * 0.51321 * 14 13 11 16 16 C 1.47115 * 120.63105 * 179.76875 * 15 14 13 17 17 C 1.40433 * 126.55355 * 64.69465 * 16 15 14 18 18 N 1.30875 * 108.81937 * 180.02562 * 17 16 15 19 19 N 1.40006 * 109.57849 * 359.97438 * 18 17 16 20 20 C 1.36386 * 132.10089 * 180.02562 * 19 18 17 21 21 C 1.35246 * 120.67483 * 179.97438 * 20 19 18 22 22 C 1.40144 * 120.34020 * 0.02562 * 21 20 19 23 23 C 1.36607 * 119.45978 * 359.97438 * 22 21 20 24 24 C 1.36919 * 107.84636 * 0.02562 * 19 18 17 25 25 H 0.97002 * 119.99858 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.02543 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.34511 * 179.97438 * 13 11 10 28 28 H 1.08001 * 120.03484 * 180.26247 * 14 13 11 29 29 H 1.08003 * 125.58792 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.65709 * 359.95765 * 20 19 18 31 31 H 1.08005 * 119.83410 * 180.02562 * 21 20 19 32 32 H 1.07996 * 120.27067 * 180.02562 * 22 21 20 33 33 H 1.07998 * 120.36447 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 3.0973 1.6964 -1.2124 5 1 1.2786 2.7464 0.0006 6 1 3.0972 1.6964 1.2125 7 6 2.0084 -1.2107 0.0005 8 1 3.0513 -1.2321 0.2803 9 6 1.3532 -2.4015 -0.3634 10 6 0.2190 -2.3699 -1.1979 11 6 -0.4060 -3.5325 -1.5417 12 9 -1.4932 -3.4878 -2.3424 13 6 0.0540 -4.7640 -1.0841 14 6 1.1604 -4.8567 -0.2713 15 6 1.8384 -3.6980 0.1185 16 6 3.0200 -3.7786 0.9913 17 6 4.2501 -4.3803 0.6801 18 7 5.0538 -4.2527 1.7052 19 7 4.3973 -3.5655 2.7333 20 6 4.7970 -3.1883 3.9815 21 6 3.9562 -2.5183 4.8021 22 6 2.6579 -2.2016 4.3801 23 6 2.2475 -2.5748 3.1317 24 6 3.1336 -3.2675 2.2986 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1561 -1.4258 -1.5645 27 1 -0.4655 -5.6648 -1.3759 28 1 1.5021 -5.8232 0.0685 29 1 4.4932 -4.8682 -0.2522 30 1 5.7950 -3.4274 4.3181 31 1 4.2870 -2.2258 5.7878 32 1 1.9876 -1.6662 5.0361 33 1 1.2500 -2.3387 2.7917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242968095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:04 Heat of formation + Delta-G solvation = 72.794958 kcal Electronic energy + Delta-G solvation = -21085.859077 eV Core-core repulsion = 17799.364014 eV Total energy + Delta-G solvation = -3286.495063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.64032 -41.34072 -37.27941 -36.50731 -33.82490 -32.55487 -30.27862 -29.79252 -29.67137 -26.92139 -25.30179 -23.32844 -22.21420 -21.61436 -21.03670 -19.50262 -17.61163 -16.64252 -16.23966 -15.92849 -15.53336 -15.07487 -14.87581 -14.49470 -14.36602 -14.29326 -14.09095 -13.01409 -12.84899 -12.62925 -12.08593 -11.86668 -11.82117 -11.56893 -11.37083 -11.18853 -11.01770 -10.81710 -10.51154 -10.21933 -9.97358 -9.91569 -9.51320 -9.32328 -8.84782 -7.64149 -7.38975 -7.02570 -6.58199 -4.53430 1.22815 1.57749 2.50914 2.77330 2.77905 2.96645 2.99531 3.12196 3.33264 3.78402 3.93521 4.41468 4.70109 5.10987 5.17772 5.27445 5.39282 5.63958 5.71428 5.89132 6.00044 6.16585 6.24501 6.29027 6.42425 6.54655 6.74335 6.87440 6.88348 6.95490 7.10188 7.16987 7.42291 7.46900 7.67451 7.80303 7.89451 8.10092 8.14736 8.43535 8.65612 8.76921 9.94324 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.008047 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.923223 B = 3478.891545 C = 4843.829563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.429 4.429 8 H 0.082 0.918 9 C 0.149 3.851 10 C -0.210 4.210 11 C 0.115 3.885 12 F -0.171 7.171 13 C -0.288 4.288 14 C -0.044 4.044 15 C -0.158 4.158 16 C -0.132 4.132 17 C 0.070 3.930 18 N -0.336 5.336 19 N -0.278 5.278 20 C 0.093 3.907 21 C -0.163 4.163 22 C -0.121 4.121 23 C -0.064 4.064 24 C 0.100 3.900 25 H 0.286 0.714 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.186 0.814 30 H 0.157 0.843 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 -1.319 6.877 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.230 4.230 11 C 0.096 3.904 12 F -0.150 7.150 13 C -0.308 4.308 14 C -0.062 4.062 15 C -0.160 4.160 16 C -0.143 4.143 17 C -0.105 4.105 18 N -0.160 5.160 19 N -0.045 5.045 20 C -0.032 4.032 21 C -0.186 4.186 22 C -0.144 4.144 23 C -0.084 4.084 24 C -0.018 4.018 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.203 0.797 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.678 -1.482 7.195 9.285 hybrid contribution -0.640 1.024 -0.425 1.281 sum 5.038 -0.458 6.770 8.451 Atomic orbital electron populations 1.69862 1.07574 1.29947 1.32619 1.25983 0.94745 1.01560 0.92111 0.86373 0.80303 0.79992 0.80360 1.18536 1.20037 1.18790 1.19375 0.98065 0.90612 1.37625 0.90022 1.18346 0.89232 0.90892 0.86949 1.20908 1.01316 0.96124 1.04656 1.17437 0.84849 0.95187 0.92920 1.91331 1.53664 1.97626 1.72363 1.19994 1.04028 0.94821 1.11995 1.20371 0.93901 0.96062 0.95885 1.18786 0.98860 0.92767 1.05623 1.18605 0.95712 1.07741 0.92271 1.24010 0.91477 0.98015 0.97027 1.77369 1.20351 1.21446 0.96875 1.45876 1.10539 1.37194 1.10914 1.21276 1.00542 0.99128 0.82250 1.20674 0.94651 1.02837 1.00405 1.21066 0.96028 1.00862 0.96395 1.20710 1.00175 0.95400 0.92087 1.19555 0.85874 1.00912 0.95428 0.90309 0.85348 0.88503 0.88431 0.79717 0.82526 0.83810 0.84981 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.65 10.96 55.54 0.61 -18.04 16 2 C 0.08 1.78 5.15 -17.35 -0.09 1.69 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.43 -10.51 8.36 -38.07 -0.32 -10.83 16 8 H 0.08 2.04 7.31 -52.49 -0.38 1.65 16 9 C 0.15 3.71 5.73 -104.62 -0.60 3.11 16 10 C -0.21 -5.33 8.60 -39.26 -0.34 -5.66 16 11 C 0.12 2.79 7.21 -39.89 -0.29 2.50 16 12 F -0.17 -4.02 17.23 2.25 0.04 -3.99 16 13 C -0.29 -6.45 9.94 -39.46 -0.39 -6.84 16 14 C -0.04 -0.94 9.80 -39.23 -0.38 -1.33 16 15 C -0.16 -3.60 5.95 -102.35 -0.61 -4.21 16 16 C -0.13 -2.79 4.67 -104.49 -0.49 -3.27 16 17 C 0.07 1.34 11.94 -17.13 -0.20 1.13 16 18 N -0.34 -6.44 12.58 30.75 0.39 -6.05 16 19 N -0.28 -5.11 3.87 -10.46 -0.04 -5.15 16 20 C 0.09 1.34 11.19 -16.59 -0.19 1.15 16 21 C -0.16 -2.05 9.98 -39.93 -0.40 -2.45 16 22 C -0.12 -1.74 10.09 -39.46 -0.40 -2.13 16 23 C -0.06 -1.17 10.08 -39.52 -0.40 -1.56 16 24 C 0.10 1.99 6.46 -83.96 -0.54 1.45 16 25 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 26 H 0.13 3.38 6.18 -52.48 -0.32 3.06 16 27 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 28 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.19 2.97 8.06 -52.48 -0.42 2.55 16 30 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.15 2.90 8.06 -52.49 -0.42 2.47 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -27.72 298.91 -7.97 -35.69 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.80 Total: 7.47 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -5.63 Total: -27.25 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.96 Total: -29.25 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.72 -7.97 -35.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242968095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.486 kcal (2) G-P(sol) polarization free energy of solvation -27.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds