Wall clock time and date at job start Tue Mar 31 2020 05:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38115 * 119.84590 * 2 1 4 4 C 1.39735 * 120.13938 * 179.97438 * 3 2 1 5 5 C 1.47744 * 120.07949 * 179.97438 * 4 3 2 6 6 O 1.21470 * 120.00025 * 179.97438 * 5 4 3 7 7 O 1.34709 * 119.99872 * 0.02562 * 5 4 3 8 8 C 1.39376 * 119.83577 * 0.25849 * 4 3 2 9 9 C 1.39321 * 119.70328 * 359.51645 * 8 4 3 10 10 C 1.48013 * 120.06939 * 180.21550 * 9 8 4 11 11 C 1.39932 * 119.87594 * 180.02562 * 10 9 8 12 12 C 1.36261 * 120.11759 * 179.75762 * 11 10 9 13 13 C 1.40924 * 119.87906 * 0.48429 * 12 11 10 14 14 C 1.41027 * 120.12138 * 179.74082 * 13 12 11 15 15 H 1.08000 * 120.00214 * 204.69169 * 14 13 12 16 16 C 1.40015 * 119.99741 * 24.69050 * 14 13 12 17 17 N 1.30798 * 119.99991 * 17.93746 * 16 14 13 18 18 Si 1.86799 * 120.00021 * 197.93547 * 16 14 13 19 19 H 1.48503 * 109.47099 * 60.00446 * 18 16 14 20 20 H 1.48500 * 109.47075 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47180 * 300.00080 * 18 16 14 22 22 C 1.40926 * 119.76180 * 359.76944 * 13 12 11 23 23 C 1.36260 * 119.88020 * 359.97438 * 22 13 12 24 24 C 1.38041 * 119.84856 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46624 * 89.99988 * 1 2 3 26 26 H 1.08991 * 109.46859 * 209.99689 * 1 2 3 27 27 H 1.08996 * 109.46669 * 329.99769 * 1 2 3 28 28 H 1.08000 * 119.93054 * 0.02562 * 3 2 1 29 29 H 0.96703 * 117.00016 * 179.97438 * 7 5 4 30 30 H 1.08009 * 120.14882 * 179.74310 * 8 4 3 31 31 H 1.08005 * 119.94062 * 359.97438 * 11 10 9 32 32 H 1.08005 * 120.05715 * 180.22649 * 12 11 10 33 33 H 0.96996 * 119.99824 * 179.97438 * 17 16 14 34 34 H 1.08007 * 120.06455 * 179.97438 * 22 13 12 35 35 H 1.07991 * 119.94285 * 180.02562 * 23 22 13 36 36 H 1.07995 * 119.92162 * 359.97225 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1980 0.0000 4 6 3.5917 1.2051 0.0005 5 6 4.3257 2.4874 0.0000 6 8 5.5404 2.4919 0.0009 7 8 3.6477 3.6514 -0.0006 8 6 4.2913 -0.0003 -0.0044 9 6 3.5912 -1.2048 0.0004 10 6 4.3260 -2.4897 0.0001 11 6 3.6188 -3.6971 0.0044 12 6 4.2902 -4.8828 -0.0009 13 6 5.6994 -4.8916 -0.0004 14 6 6.3995 -6.1158 -0.0003 15 1 7.4051 -6.1629 0.3908 16 6 5.7908 -7.2704 -0.5073 17 7 4.7449 -7.1700 -1.2863 18 14 6.4724 -8.9540 -0.0711 19 1 6.4254 -9.1408 1.4014 20 1 5.6557 -10.0046 -0.7301 21 1 7.8784 -9.0550 -0.5383 22 6 6.4066 -3.6726 0.0007 23 6 5.7253 -2.4926 0.0007 24 6 2.1941 -1.1973 -0.0005 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5137 27 1 -0.3632 0.8900 0.5139 28 1 1.6508 2.1312 0.0004 29 1 4.1714 4.4644 -0.0005 30 1 5.3714 -0.0007 -0.0082 31 1 2.5388 -3.6892 0.0083 32 1 3.7433 -5.8142 -0.0013 33 1 4.3235 -7.9698 -1.6377 34 1 7.4867 -3.6737 0.0015 35 1 6.2662 -1.5579 0.0011 36 1 1.6504 -2.1304 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243177639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:31 Heat of formation + Delta-G solvation = -64.387939 kcal Electronic energy + Delta-G solvation = -20318.322399 eV Core-core repulsion = 17117.046193 eV Total energy + Delta-G solvation = -3201.276206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27083 -38.85125 -37.35778 -36.04352 -34.16955 -32.64140 -31.72731 -29.68814 -28.96202 -26.71512 -25.34777 -24.56068 -22.17973 -21.31362 -19.94339 -19.70676 -17.90118 -17.60349 -16.95108 -15.85642 -15.53963 -15.43626 -15.01406 -14.50540 -13.94910 -13.60640 -13.36107 -13.16512 -13.04462 -12.80340 -12.25387 -12.18683 -12.04664 -11.88452 -11.57966 -11.37064 -11.25877 -11.22911 -11.03203 -10.68199 -10.57957 -10.42302 -9.85679 -9.48519 -9.39671 -8.78774 -8.51463 -7.69782 -7.17528 -6.97521 -4.50659 0.95250 1.50027 2.52057 2.83451 2.95066 2.97726 3.02271 3.08742 3.17949 3.75836 4.09634 4.57183 4.92376 5.07430 5.24650 5.42564 5.57426 5.59717 5.67955 5.71109 5.75071 5.90767 6.06788 6.11302 6.30815 6.39700 6.44920 6.61115 6.70198 6.78268 6.82313 6.89508 7.10057 7.22672 7.24511 7.44946 7.76077 7.86819 7.94613 7.98613 8.08660 8.42299 8.65191 8.77418 9.91752 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.003640 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.725815 B = 7690.530182 C = 8612.531046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.106 4.106 4 C -0.118 4.118 5 C 0.528 3.472 6 O -0.517 6.517 7 O -0.515 6.515 8 C -0.086 4.086 9 C 0.019 3.981 10 C -0.212 4.212 11 C -0.073 4.073 12 C -0.173 4.173 13 C 0.120 3.880 14 C -0.444 4.444 15 H 0.083 0.917 16 C 0.074 3.926 17 N -0.775 5.775 18 Si 0.913 3.087 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.230 4.230 23 C -0.060 4.060 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.409 0.591 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.286 0.714 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 10.181 1.613 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.119 4.119 5 C 0.373 3.627 6 O -0.407 6.407 7 O -0.326 6.326 8 C -0.104 4.104 9 C 0.019 3.981 10 C -0.213 4.213 11 C -0.091 4.091 12 C -0.192 4.192 13 C 0.117 3.883 14 C -0.472 4.472 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.399 5.399 18 Si 0.737 3.263 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.249 4.249 23 C -0.078 4.078 24 C -0.128 4.128 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.663 9.654 1.455 11.820 hybrid contribution 0.683 -0.207 0.021 0.714 sum -5.980 9.447 1.475 11.277 Atomic orbital electron populations 1.20751 0.91192 1.02554 1.02174 1.19711 0.95936 0.92779 1.00773 1.21031 0.92360 0.97860 1.01183 1.18824 0.93579 0.89539 1.09980 1.21127 0.85540 0.84293 0.71703 1.90872 1.15194 1.88084 1.46559 1.84583 1.45023 1.16913 1.86117 1.21312 1.00497 0.89938 0.98660 1.18909 0.92380 0.92768 0.94033 1.17963 0.92560 0.90171 1.20578 1.20496 0.97324 0.92364 0.98911 1.20990 0.94495 0.96641 1.07052 1.17747 0.92171 0.92160 0.86195 1.19735 1.01346 0.92386 1.33685 0.89885 1.26054 0.94156 1.01981 0.92513 1.69804 1.17230 1.32384 1.20438 0.86271 0.79980 0.79876 0.80187 1.18521 1.20079 1.18721 1.20700 0.97987 0.92442 1.13763 1.20434 0.92990 0.96769 0.97653 1.21380 0.93760 0.97510 1.00123 0.91341 0.91527 0.91765 0.85533 0.73331 0.84831 0.88926 0.86290 0.90274 0.88591 0.88760 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.00 36.01 0.36 -0.81 16 2 C -0.09 -1.31 5.87 -104.74 -0.61 -1.93 16 3 C -0.11 -1.51 9.26 -39.07 -0.36 -1.88 16 4 C -0.12 -1.91 5.87 -105.03 -0.62 -2.53 16 5 C 0.53 7.95 8.27 34.62 0.29 8.23 16 6 O -0.52 -9.17 17.13 -19.24 -0.33 -9.50 16 7 O -0.51 -5.64 12.67 -40.52 -0.51 -6.15 16 8 C -0.09 -1.56 8.97 -38.76 -0.35 -1.91 16 9 C 0.02 0.37 5.87 -104.93 -0.62 -0.25 16 10 C -0.21 -4.63 5.90 -104.62 -0.62 -5.24 16 11 C -0.07 -1.63 9.36 -39.66 -0.37 -2.00 16 12 C -0.17 -4.27 8.63 -39.28 -0.34 -4.60 16 13 C 0.12 3.07 5.57 -106.81 -0.60 2.47 16 14 C -0.44 -11.13 9.03 -37.86 -0.34 -11.47 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.07 1.73 5.13 -17.33 -0.09 1.64 16 17 N -0.78 -18.81 10.96 55.55 0.61 -18.20 16 18 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.23 -5.48 9.73 -39.28 -0.38 -5.86 16 23 C -0.06 -1.35 9.36 -39.66 -0.37 -1.72 16 24 C -0.11 -1.82 9.07 -39.10 -0.35 -2.18 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.13 1.52 7.60 -52.49 -0.40 1.13 16 29 H 0.41 2.47 9.11 45.56 0.42 2.89 16 30 H 0.13 2.49 5.76 -52.48 -0.30 2.19 16 31 H 0.09 1.83 6.17 -52.48 -0.32 1.50 16 32 H 0.12 3.00 6.16 -52.48 -0.32 2.67 16 33 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 34 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 35 H 0.09 1.91 6.17 -52.49 -0.32 1.58 16 36 H 0.13 1.98 6.17 -52.49 -0.32 1.66 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -28.36 313.27 -8.73 -37.09 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -2.81 Total: 9.63 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -5.37 Total: -30.02 kcal Atomic # 7 Polarization: -18.81 SS G_CDS: 0.61 Total: -18.20 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.84 Total: -15.65 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.36 -8.73 -37.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243177639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.294 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds