Wall clock time and date at job start Tue Mar 31 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38116 * 119.92708 * 2 1 4 4 C 1.38046 * 120.30149 * 179.74517 * 3 2 1 5 5 C 1.39714 * 120.15629 * 0.50944 * 4 3 2 6 6 C 1.48018 * 120.07219 * 179.74309 * 5 4 3 7 7 C 1.39927 * 119.87681 * 359.72928 * 6 5 4 8 8 C 1.36260 * 120.12256 * 180.02562 * 7 6 5 9 9 C 1.40928 * 119.87253 * 359.97438 * 8 7 6 10 10 C 1.41028 * 120.11731 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99801 * 333.46248 * 10 9 8 12 12 C 1.40007 * 120.00491 * 153.19178 * 10 9 8 13 13 N 1.30800 * 119.99613 * 344.13519 * 12 10 9 14 14 Si 1.86801 * 120.00633 * 164.13882 * 12 10 9 15 15 H 1.48507 * 109.47070 * 89.99695 * 14 12 10 16 16 H 1.48501 * 109.47248 * 209.99795 * 14 12 10 17 17 H 1.48495 * 109.46938 * 330.00220 * 14 12 10 18 18 C 1.40930 * 119.76538 * 0.27648 * 9 8 7 19 19 C 1.36260 * 119.87651 * 359.46266 * 18 9 8 20 20 C 1.39325 * 119.86025 * 359.47331 * 5 4 3 21 21 C 1.39376 * 119.69746 * 0.27308 * 20 5 4 22 22 C 1.47746 * 120.07969 * 180.02562 * 21 20 5 23 23 O 1.21467 * 119.99721 * 174.24530 * 22 21 20 24 24 O 1.34700 * 120.00255 * 354.24447 * 22 21 20 25 25 H 1.09000 * 109.47291 * 262.84270 * 1 2 3 26 26 H 1.09002 * 109.47189 * 22.84944 * 1 2 3 27 27 H 1.09007 * 109.47090 * 142.84619 * 1 2 3 28 28 H 1.07995 * 119.84768 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.92156 * 180.28310 * 4 3 2 30 30 H 1.08000 * 119.93869 * 359.97438 * 7 6 5 31 31 H 1.07992 * 120.06143 * 179.97438 * 8 7 6 32 32 H 0.97007 * 120.00045 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.06096 * 179.70062 * 18 9 8 34 34 H 1.07994 * 119.94096 * 180.27476 * 19 18 9 35 35 H 1.07995 * 120.15209 * 180.24982 * 20 5 4 36 36 H 0.96701 * 117.00270 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1970 0.0000 4 6 3.5765 1.2060 0.0053 5 6 4.2863 0.0026 0.0000 6 6 5.7664 0.0145 -0.0001 7 6 6.4537 1.2334 -0.0005 8 6 7.8162 1.2501 -0.0011 9 6 8.5331 0.0368 -0.0007 10 6 9.9433 0.0482 -0.0007 11 1 10.4766 0.8892 -0.4190 12 6 10.6522 -1.0281 0.5464 13 7 10.0424 -1.8849 1.3243 14 14 12.4686 -1.2405 0.1658 15 1 13.2751 -0.5155 1.1803 16 1 12.8154 -2.6841 0.1971 17 1 12.7593 -0.6907 -1.1827 18 6 7.8358 -1.1879 -0.0056 19 6 6.4732 -1.1931 0.0003 20 6 3.5979 -1.2087 0.0004 21 6 2.2042 -1.2109 0.0003 22 6 1.4657 -2.4906 0.0014 23 8 0.2556 -2.4933 0.1068 24 8 2.1343 -3.6542 -0.1147 25 1 -0.3634 -0.1280 1.0196 26 1 -0.3634 0.9470 -0.3991 27 1 -0.3634 -0.8191 -0.6207 28 1 1.6524 2.1301 0.0004 29 1 4.1091 2.1456 0.0099 30 1 5.9032 2.1625 -0.0012 31 1 8.3456 2.1914 -0.0018 32 1 10.5334 -2.6308 1.7031 33 1 8.3804 -2.1205 -0.0102 34 1 5.9378 -2.1310 0.0011 35 1 4.1418 -2.1417 0.0003 36 1 1.6079 -4.4654 -0.1094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243195049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:37 Heat of formation + Delta-G solvation = -58.518352 kcal Electronic energy + Delta-G solvation = -20456.361559 eV Core-core repulsion = 17255.339878 eV Total energy + Delta-G solvation = -3201.021682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38956 -38.76507 -37.37051 -36.07008 -34.16321 -32.49164 -31.27393 -29.85611 -29.43518 -27.11144 -24.79458 -24.00715 -22.19465 -21.51837 -20.41976 -19.63965 -17.93134 -17.56580 -16.89000 -15.70582 -15.61881 -15.32687 -14.92755 -14.49931 -13.99627 -13.42508 -13.36372 -13.22520 -13.14375 -12.74167 -12.28036 -12.21684 -12.05469 -11.83219 -11.50208 -11.43889 -11.24212 -11.17127 -11.01039 -10.75356 -10.53998 -10.02838 -9.83275 -9.46636 -9.40047 -8.78079 -8.62061 -7.70867 -7.12746 -6.95136 -4.50880 0.95358 1.50244 2.54263 2.81680 2.95946 3.00038 3.00691 3.13653 3.16518 3.76853 4.09867 4.58227 4.98808 5.10324 5.23327 5.41390 5.53037 5.56800 5.75507 5.85447 5.87495 6.00341 6.07753 6.14312 6.31507 6.38415 6.56217 6.61442 6.72354 6.76839 6.82491 6.89124 7.08540 7.21248 7.24239 7.44949 7.74243 7.86673 7.96854 7.99372 8.08539 8.42727 8.65490 8.76935 9.94566 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.003666 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.745856 B = 7636.089229 C = 8504.081673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.063 4.063 3 C -0.123 4.123 4 C -0.105 4.105 5 C 0.006 3.994 6 C -0.207 4.207 7 C -0.063 4.063 8 C -0.229 4.229 9 C 0.120 3.880 10 C -0.446 4.446 11 H 0.082 0.918 12 C 0.073 3.927 13 N -0.779 5.779 14 Si 0.912 3.088 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.169 4.169 19 C -0.075 4.075 20 C -0.083 4.083 21 C -0.126 4.126 22 C 0.528 3.472 23 O -0.519 6.519 24 O -0.511 6.511 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.285 0.715 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -0.088 -1.867 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.123 4.123 5 C 0.006 3.994 6 C -0.209 4.209 7 C -0.081 4.081 8 C -0.248 4.248 9 C 0.117 3.883 10 C -0.474 4.474 11 H 0.101 0.899 12 C -0.147 4.147 13 N -0.402 5.402 14 Si 0.736 3.264 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.182 1.182 18 C -0.188 4.188 19 C -0.093 4.093 20 C -0.101 4.101 21 C -0.127 4.127 22 C 0.375 3.625 23 O -0.410 6.410 24 O -0.322 6.322 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.703 0.052 -1.684 9.848 hybrid contribution 0.559 -0.705 0.049 0.901 sum -9.144 -0.653 -1.635 9.312 Atomic orbital electron populations 1.20987 0.90729 1.02370 1.02894 1.19781 0.96086 0.91344 0.99100 1.20805 0.94085 0.96754 1.02470 1.21485 0.93560 0.98290 0.99007 1.18974 0.93726 0.91756 0.94955 1.17992 0.88963 0.93868 1.20032 1.20381 0.94266 0.95252 0.98184 1.20708 0.93265 0.97182 1.13657 1.17749 0.93284 0.91036 0.86182 1.19727 0.91685 1.03365 1.32655 0.89947 1.26032 1.01559 0.94455 0.92644 1.69804 1.38931 1.11178 1.20328 0.86235 0.81300 0.78521 0.80348 1.19254 1.19851 1.18227 1.20981 0.92492 0.98614 1.06687 1.20536 0.94602 0.95308 0.98881 1.21521 0.91898 0.98942 0.97737 1.18717 0.93459 0.89296 1.11204 1.21102 0.85332 0.84344 0.71734 1.90800 1.15387 1.87781 1.47072 1.84633 1.45248 1.16991 1.85303 0.91360 0.92638 0.89651 0.85846 0.85565 0.88879 0.88633 0.90370 0.86421 0.88833 0.84678 0.73318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.70 36.01 0.31 -1.17 16 2 C -0.06 -0.95 5.92 -104.11 -0.62 -1.56 16 3 C -0.12 -1.77 9.64 -39.70 -0.38 -2.15 16 4 C -0.11 -1.70 9.42 -39.10 -0.37 -2.07 16 5 C 0.01 0.11 5.87 -104.93 -0.62 -0.50 16 6 C -0.21 -4.43 5.90 -104.62 -0.62 -5.04 16 7 C -0.06 -1.33 9.36 -39.66 -0.37 -1.70 16 8 C -0.23 -5.29 9.73 -39.28 -0.38 -5.68 16 9 C 0.12 3.03 5.55 -106.80 -0.59 2.44 16 10 C -0.45 -11.10 9.03 -37.86 -0.34 -11.44 16 11 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 12 C 0.07 1.72 5.16 -17.33 -0.09 1.63 16 13 N -0.78 -18.95 11.00 55.55 0.61 -18.34 16 14 Si 0.91 17.42 29.59 -169.99 -5.03 12.39 16 15 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 16 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 18 C -0.17 -4.15 8.61 -39.28 -0.34 -4.49 16 19 C -0.07 -1.68 9.36 -39.66 -0.37 -2.05 16 20 C -0.08 -1.45 8.99 -38.75 -0.35 -1.80 16 21 C -0.13 -2.04 5.87 -105.03 -0.62 -2.66 16 22 C 0.53 7.89 8.20 34.62 0.28 8.18 16 23 O -0.52 -8.23 14.11 -19.24 -0.27 -8.50 16 24 O -0.51 -6.28 12.69 -40.49 -0.51 -6.79 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.60 8.03 -51.93 -0.42 0.18 16 27 H 0.08 1.20 5.87 -51.93 -0.30 0.89 16 28 H 0.12 1.41 8.05 -52.49 -0.42 0.99 16 29 H 0.13 1.86 6.17 -52.49 -0.32 1.54 16 30 H 0.09 1.69 6.17 -52.49 -0.32 1.37 16 31 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.29 6.27 8.30 -40.82 -0.34 5.94 16 33 H 0.12 2.98 6.27 -52.49 -0.33 2.65 16 34 H 0.09 1.90 6.17 -52.49 -0.32 1.57 16 35 H 0.14 2.33 5.74 -52.49 -0.30 2.02 16 36 H 0.41 2.88 9.11 45.56 0.42 3.30 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -27.72 307.97 -8.74 -36.46 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.72 Total: 10.21 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -5.46 Total: -30.07 kcal Atomic # 7 Polarization: -18.95 SS G_CDS: 0.61 Total: -18.34 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.79 Total: -15.29 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.72 -8.74 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243195049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.053 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds