Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38050 * 119.95246 * 2 1 4 4 C 1.38127 * 120.27768 * 179.97438 * 3 2 1 5 5 C 1.39464 * 120.18253 * 0.02878 * 4 3 2 6 6 C 1.48421 * 120.04367 * 179.97438 * 5 4 3 7 7 C 1.39717 * 119.99673 * 179.72541 * 6 5 4 8 8 C 1.38402 * 120.38256 * 179.71613 * 7 6 5 9 9 C 1.37718 * 120.37440 * 0.55774 * 8 7 6 10 10 C 1.40754 * 119.98908 * 359.71964 * 9 8 7 11 11 C 1.41421 * 120.19019 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00568 * 145.43779 * 11 10 9 13 13 C 1.39936 * 119.99703 * 325.43420 * 11 10 9 14 14 N 1.30827 * 120.00053 * 348.36886 * 13 11 10 15 15 Si 1.86801 * 119.99955 * 168.36658 * 13 11 10 16 16 H 1.48504 * 109.46775 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47432 * 120.00115 * 15 13 11 18 18 H 1.48500 * 109.46824 * 240.00121 * 15 13 11 19 19 C 1.38718 * 120.00285 * 359.97438 * 6 5 4 20 20 C 1.39041 * 119.90459 * 359.97438 * 5 4 3 21 21 C 1.39453 * 119.72799 * 359.74503 * 20 5 4 22 22 C 1.47741 * 120.09657 * 180.27401 * 21 20 5 23 23 O 1.21463 * 120.00425 * 185.42750 * 22 21 20 24 24 O 1.34707 * 119.99863 * 5.42322 * 22 21 20 25 25 H 1.09001 * 109.47146 * 94.63453 * 1 2 3 26 26 H 1.08994 * 109.47549 * 334.62800 * 1 2 3 27 27 H 1.09007 * 109.47139 * 214.62420 * 1 2 3 28 28 H 1.07994 * 119.85814 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.90697 * 180.02562 * 4 3 2 30 30 H 1.08005 * 119.81295 * 0.02562 * 7 6 5 31 31 H 1.07995 * 119.81368 * 180.27369 * 8 7 6 32 32 H 1.08000 * 120.00846 * 179.70108 * 9 8 7 33 33 H 0.96999 * 120.00610 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.18987 * 0.03143 * 19 6 5 35 35 H 1.08004 * 120.13444 * 180.02562 * 20 5 4 36 36 H 0.96695 * 117.00346 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1961 0.0000 4 6 3.5775 1.2040 0.0005 5 6 4.2855 0.0024 0.0005 6 6 5.7696 0.0144 0.0005 7 6 6.4779 -1.1899 0.0062 8 6 7.8619 -1.1880 0.0003 9 6 8.5567 0.0010 0.0003 10 6 7.8590 1.2235 0.0004 11 6 8.5682 2.4470 -0.0002 12 1 8.1725 3.3004 -0.5308 13 6 9.7828 2.5520 0.6869 14 7 10.1519 1.6056 1.5112 15 14 10.8770 4.0435 0.4270 16 1 10.2375 4.9626 -0.5486 17 1 11.0684 4.7485 1.7198 18 1 12.1952 3.6049 -0.0975 19 6 6.4535 1.2213 0.0000 20 6 3.5989 -1.2067 0.0004 21 6 2.2044 -1.2101 0.0058 22 6 1.4667 -2.4902 0.0119 23 8 0.2558 -2.4938 -0.0829 24 8 2.1371 -3.6533 0.1225 25 1 -0.3633 -0.0830 -1.0243 26 1 -0.3634 0.9285 0.4403 27 1 -0.3634 -0.8457 0.5839 28 1 1.6532 2.1296 0.0004 29 1 4.1106 2.1432 0.0009 30 1 5.9424 -2.1278 0.0102 31 1 8.4001 -2.1243 0.0004 32 1 9.6367 -0.0044 0.0006 33 1 10.9936 1.6785 1.9878 34 1 5.9091 2.1541 0.0001 35 1 4.1435 -2.1394 0.0008 36 1 1.6114 -4.4649 0.1214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243196139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -56.584546 kcal Electronic energy + Delta-G solvation = -20484.691217 eV Core-core repulsion = 17283.753392 eV Total energy + Delta-G solvation = -3200.937826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52616 -38.89574 -37.32547 -36.16934 -33.95569 -32.62595 -31.40219 -29.89553 -29.38829 -26.39165 -25.33600 -24.11943 -22.26743 -21.68348 -20.38259 -19.75276 -18.05117 -17.55893 -16.39733 -15.97632 -15.71987 -15.28806 -14.92038 -14.43489 -14.32213 -13.53905 -13.46601 -13.28605 -13.17923 -12.71920 -12.36284 -12.30936 -12.13191 -11.68309 -11.60663 -11.52641 -11.23946 -11.15722 -10.94665 -10.62786 -10.47962 -10.09700 -9.77080 -9.45893 -9.28508 -8.91699 -8.78403 -7.51506 -7.05737 -6.74941 -4.44555 0.81985 1.34809 2.49821 2.74116 2.98996 3.04008 3.07156 3.11958 3.15331 3.93178 4.05085 4.66043 4.86190 4.93372 5.10585 5.26651 5.38137 5.57006 5.62439 5.75031 5.77702 5.88671 5.99492 6.14375 6.21690 6.33651 6.43731 6.48609 6.63472 6.65360 6.80150 6.91606 7.07494 7.15419 7.25420 7.46415 7.70579 7.88522 7.89292 7.96622 8.16522 8.53333 8.82905 8.86356 10.23271 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.003706 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.431395 B = 7554.441419 C = 8359.365975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 C -0.133 4.133 4 C -0.076 4.076 5 C -0.030 4.030 6 C -0.048 4.048 7 C -0.210 4.210 8 C -0.110 4.110 9 C -0.140 4.140 10 C 0.111 3.889 11 C -0.474 4.474 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.807 5.807 15 Si 0.908 3.092 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.273 1.273 19 C -0.193 4.193 20 C -0.059 4.059 21 C -0.137 4.137 22 C 0.530 3.470 23 O -0.517 6.517 24 O -0.511 6.511 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.279 0.721 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 -4.023 -1.766 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.030 4.030 6 C -0.048 4.048 7 C -0.229 4.229 8 C -0.129 4.129 9 C -0.159 4.159 10 C 0.109 3.891 11 C -0.505 4.505 12 H 0.096 0.904 13 C -0.140 4.140 14 N -0.433 5.433 15 Si 0.733 3.267 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.212 4.212 20 C -0.077 4.077 21 C -0.139 4.139 22 C 0.376 3.624 23 O -0.408 6.408 24 O -0.322 6.322 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.281 -3.718 -1.623 11.988 hybrid contribution 0.372 0.093 0.061 0.388 sum -10.909 -3.626 -1.562 11.601 Atomic orbital electron populations 1.21118 0.90430 1.03162 1.03131 1.19913 0.96372 0.91348 0.96215 1.20905 0.94074 0.97058 1.03036 1.21658 0.93660 0.98746 0.95342 1.19111 0.93970 0.92120 0.97759 1.18268 0.88766 0.94430 1.03344 1.20489 0.93953 0.95304 1.13198 1.20655 0.93669 0.97137 1.01413 1.21362 0.99481 0.91528 1.03567 1.17542 0.90475 0.93378 0.87732 1.19515 1.03915 0.97546 1.29479 0.90403 1.25820 0.97489 0.97506 0.93180 1.69780 1.21194 1.32782 1.19571 0.86264 0.79907 0.81487 0.79050 1.18517 1.20059 1.19840 1.21199 0.94485 0.94860 1.10695 1.21575 0.91979 0.99036 0.95115 1.18745 0.93441 0.89519 1.12145 1.21015 0.85318 0.84294 0.71748 1.90793 1.15284 1.87655 1.47097 1.84619 1.45216 1.17015 1.85358 0.91020 0.92274 0.88998 0.85317 0.84722 0.88745 0.88903 0.86963 0.91018 0.88269 0.84271 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 8.83 36.00 0.32 -1.17 16 2 C -0.04 -0.54 5.92 -104.16 -0.62 -1.16 16 3 C -0.13 -1.83 9.65 -39.69 -0.38 -2.21 16 4 C -0.08 -1.22 9.42 -39.17 -0.37 -1.59 16 5 C -0.03 -0.53 5.87 -104.95 -0.62 -1.15 16 6 C -0.05 -1.02 5.87 -104.97 -0.62 -1.64 16 7 C -0.21 -4.45 9.43 -38.97 -0.37 -4.82 16 8 C -0.11 -2.46 10.01 -39.71 -0.40 -2.86 16 9 C -0.14 -3.49 8.63 -38.82 -0.33 -3.83 16 10 C 0.11 2.83 5.46 -106.86 -0.58 2.25 16 11 C -0.47 -12.19 9.02 -37.74 -0.34 -12.53 16 12 H 0.08 1.93 7.87 -52.49 -0.41 1.51 16 13 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 14 N -0.81 -20.63 11.30 55.55 0.63 -20.01 16 15 Si 0.91 18.42 29.58 -169.99 -5.03 13.39 16 16 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 C -0.19 -4.47 9.17 -38.53 -0.35 -4.83 16 20 C -0.06 -0.97 8.99 -38.83 -0.35 -1.32 16 21 C -0.14 -2.08 5.87 -105.02 -0.62 -2.70 16 22 C 0.53 7.32 8.21 34.61 0.28 7.60 16 23 O -0.52 -7.66 14.04 -19.24 -0.27 -7.93 16 24 O -0.51 -5.66 12.69 -40.51 -0.51 -6.18 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 27 H 0.09 1.21 5.64 -51.93 -0.29 0.92 16 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.14 2.06 6.18 -52.49 -0.32 1.74 16 30 H 0.09 1.75 6.18 -52.48 -0.32 1.43 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.11 2.89 6.70 -52.49 -0.35 2.54 16 33 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 34 H 0.10 2.12 6.18 -52.49 -0.32 1.80 16 35 H 0.14 2.19 5.75 -52.48 -0.30 1.89 16 36 H 0.41 2.43 9.11 45.56 0.42 2.85 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -28.69 308.69 -8.70 -37.39 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.74 Total: 8.83 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -5.43 Total: -30.15 kcal Atomic # 7 Polarization: -20.63 SS G_CDS: 0.63 Total: -20.01 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.78 Total: -14.11 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.69 -8.70 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243196139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.192 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds