Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37634 * 120.06149 * 2 1 4 4 C 1.39817 * 119.87003 * 180.24756 * 3 2 1 5 5 C 1.47583 * 120.01044 * 179.76557 * 4 3 2 6 6 O 1.21483 * 119.99792 * 359.97438 * 5 4 3 7 7 O 1.34748 * 119.99825 * 179.97438 * 5 4 3 8 8 C 1.39823 * 119.98449 * 359.74376 * 4 3 2 9 9 C 1.36568 * 120.11948 * 0.02562 * 8 4 3 10 10 C 1.39764 * 120.13189 * 359.95381 * 9 8 4 11 11 C 1.47875 * 119.99666 * 180.02562 * 10 9 8 12 12 C 1.39987 * 119.88664 * 129.72195 * 11 10 9 13 13 C 1.36231 * 120.12036 * 180.28482 * 12 11 10 14 14 C 1.40956 * 119.87956 * 359.97438 * 13 12 11 15 15 C 1.40982 * 120.11356 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00427 * 24.69690 * 15 14 13 17 17 C 1.40098 * 119.99453 * 204.70134 * 15 14 13 18 18 N 1.30742 * 120.00686 * 17.93782 * 17 15 14 19 19 Si 1.86807 * 119.99516 * 197.93817 * 17 15 14 20 20 H 1.48502 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46724 * 120.00027 * 19 17 15 22 22 H 1.48495 * 109.47114 * 239.99702 * 19 17 15 23 23 C 1.40959 * 119.77163 * 0.02562 * 14 13 12 24 24 C 1.36226 * 119.88109 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.47565 * 270.25968 * 1 2 3 26 26 H 1.09002 * 109.47039 * 30.25809 * 1 2 3 27 27 H 1.09004 * 109.47059 * 150.25625 * 1 2 3 28 28 H 1.08003 * 120.06624 * 0.02562 * 3 2 1 29 29 H 0.96698 * 116.99650 * 179.97438 * 7 5 4 30 30 H 1.07998 * 119.94279 * 179.97438 * 8 4 3 31 31 H 1.08000 * 119.93723 * 179.97438 * 9 8 4 32 32 H 1.08002 * 119.94256 * 0.25977 * 12 11 10 33 33 H 1.07996 * 120.06229 * 179.97438 * 13 12 11 34 34 H 0.96999 * 120.00096 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.05970 * 179.97438 * 23 14 13 36 36 H 1.08006 * 119.94429 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1912 0.0000 4 6 3.5946 1.1865 -0.0052 5 6 4.3370 2.4620 -0.0105 6 8 3.7332 3.5162 -0.0107 7 8 5.6845 2.4572 -0.0150 8 6 4.2894 -0.0269 -0.0050 9 6 3.6047 -1.2086 -0.0003 10 6 2.2071 -1.2096 0.0054 11 6 1.4688 -2.4909 0.0111 12 6 0.4523 -2.7060 0.9493 13 6 -0.2270 -3.8868 0.9626 14 6 0.0950 -4.8927 0.0291 15 6 -0.6052 -6.1163 0.0380 16 1 -1.6042 -6.1639 0.4455 17 6 -0.0048 -7.2706 -0.4815 18 7 1.2912 -7.3152 -0.6481 19 14 -1.0562 -8.7462 -0.9365 20 1 -2.4825 -8.4434 -0.6549 21 1 -0.8902 -9.0455 -2.3815 22 1 -0.6318 -9.9223 -0.1354 23 6 1.1194 -4.6710 -0.9134 24 6 1.7925 -3.4866 -0.9182 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6585 2.1277 0.0004 29 1 6.1265 3.3173 -0.0187 30 1 5.3693 -0.0297 -0.0095 31 1 4.1443 -2.1441 -0.0006 32 1 0.2064 -1.9347 1.6641 33 1 -1.0107 -4.0519 1.6870 34 1 1.7067 -8.1143 -1.0082 35 1 1.3702 -5.4386 -1.6305 36 1 2.5774 -3.3155 -1.6402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243203282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -64.500052 kcal Electronic energy + Delta-G solvation = -20422.047261 eV Core-core repulsion = 17220.766193 eV Total energy + Delta-G solvation = -3201.281068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29638 -38.98508 -37.29210 -36.04161 -34.11090 -32.67057 -31.58989 -29.62129 -29.11944 -26.80246 -25.85868 -23.66056 -21.74347 -21.17987 -20.70656 -19.91628 -17.85543 -17.52236 -17.03549 -15.90767 -15.55496 -15.34442 -14.94137 -14.23807 -14.00556 -13.70147 -13.47651 -13.18499 -12.98724 -12.71399 -12.33305 -12.17243 -11.88804 -11.80604 -11.53314 -11.49567 -11.28974 -11.13958 -10.88341 -10.71969 -10.50513 -10.43221 -9.79980 -9.58078 -9.41622 -8.66943 -8.41582 -7.69997 -7.32655 -6.99365 -4.52823 0.87271 1.69392 2.43694 2.78342 2.95862 2.99932 3.01134 3.09872 3.10158 3.76423 4.06232 4.44746 5.04280 5.16773 5.23522 5.42842 5.50885 5.53665 5.69110 5.94528 5.98849 6.13541 6.18687 6.23600 6.24644 6.41856 6.52898 6.55716 6.67276 6.81664 6.84247 6.92597 7.08966 7.19024 7.20993 7.44913 7.73110 7.87075 7.93370 7.94449 8.08773 8.43161 8.66363 8.77464 9.92786 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.040807 B = 0.003373 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.984566 B = 8298.796384 C = 8797.489279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C -0.047 4.047 4 C -0.168 4.168 5 C 0.531 3.469 6 O -0.528 6.528 7 O -0.515 6.515 8 C -0.060 4.060 9 C -0.143 4.143 10 C 0.060 3.940 11 C -0.218 4.218 12 C -0.055 4.055 13 C -0.232 4.232 14 C 0.120 3.880 15 C -0.447 4.447 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.777 5.777 19 Si 0.910 3.090 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.173 4.173 24 C -0.070 4.070 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.408 0.592 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.285 0.715 35 H 0.119 0.881 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 8.845 -0.199 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.065 4.065 4 C -0.169 4.169 5 C 0.378 3.622 6 O -0.419 6.419 7 O -0.326 6.326 8 C -0.078 4.078 9 C -0.161 4.161 10 C 0.060 3.940 11 C -0.219 4.219 12 C -0.074 4.074 13 C -0.251 4.251 14 C 0.117 3.883 15 C -0.475 4.475 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.400 5.400 19 Si 0.734 3.266 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.192 4.192 24 C -0.089 4.089 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.266 0.734 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.804 8.560 -0.266 9.371 hybrid contribution 0.117 -0.152 -0.156 0.247 sum 3.922 8.408 -0.422 9.287 Atomic orbital electron populations 1.20814 0.90655 1.02927 1.02102 1.19975 0.96527 0.91674 1.03122 1.20962 0.91830 0.98208 0.95522 1.18814 0.93101 0.90092 1.14894 1.21044 0.80010 0.89694 0.71492 1.90845 1.69665 1.33786 1.47611 1.84601 1.21471 1.40445 1.86122 1.20995 0.99936 0.91297 0.95606 1.21089 0.93862 0.97938 1.03205 1.19278 0.92399 0.92937 0.89390 1.17985 1.04553 0.93921 1.05490 1.20330 0.94339 0.96188 0.96503 1.20664 1.05454 0.96299 1.02720 1.17728 0.90272 0.91902 0.88366 1.19760 1.01810 0.92538 1.33402 0.89939 1.26043 0.94952 1.00806 0.92813 1.69790 1.10389 1.29371 1.30469 0.86215 0.81244 0.79994 0.79126 1.18158 1.19459 1.19757 1.20981 1.00719 0.96245 1.01259 1.20449 0.98117 0.93223 0.97093 0.91567 0.92478 0.90040 0.85308 0.73395 0.85334 0.85372 0.89029 0.88713 0.90438 0.86351 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.45 36.01 0.30 -1.31 16 2 C -0.11 -1.86 5.87 -104.27 -0.61 -2.47 16 3 C -0.05 -0.73 9.24 -39.21 -0.36 -1.09 16 4 C -0.17 -2.56 5.88 -104.90 -0.62 -3.17 16 5 C 0.53 7.55 8.27 34.54 0.29 7.84 16 6 O -0.53 -8.68 17.12 -19.25 -0.33 -9.01 16 7 O -0.52 -5.52 12.66 -40.62 -0.51 -6.03 16 8 C -0.06 -0.88 9.55 -39.59 -0.38 -1.26 16 9 C -0.14 -2.35 9.43 -39.61 -0.37 -2.72 16 10 C 0.06 1.09 5.47 -104.81 -0.57 0.51 16 11 C -0.22 -4.49 4.72 -104.64 -0.49 -4.99 16 12 C -0.06 -1.15 7.84 -39.65 -0.31 -1.46 16 13 C -0.23 -5.28 9.73 -39.27 -0.38 -5.66 16 14 C 0.12 2.98 5.57 -106.80 -0.60 2.38 16 15 C -0.45 -11.02 9.03 -37.85 -0.34 -11.36 16 16 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 17 C 0.07 1.73 5.13 -17.32 -0.09 1.64 16 18 N -0.78 -18.68 10.96 55.56 0.61 -18.07 16 19 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 23 C -0.17 -4.18 8.63 -39.28 -0.34 -4.52 16 24 C -0.07 -1.54 9.42 -39.65 -0.37 -1.91 16 25 H 0.07 0.92 7.50 -51.93 -0.39 0.53 16 26 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.08 1.35 6.47 -51.93 -0.34 1.01 16 28 H 0.13 1.87 7.64 -52.48 -0.40 1.47 16 29 H 0.41 2.37 9.11 45.56 0.42 2.78 16 30 H 0.13 1.61 7.59 -52.49 -0.40 1.21 16 31 H 0.13 2.03 8.03 -52.49 -0.42 1.61 16 32 H 0.09 1.71 6.86 -52.49 -0.36 1.35 16 33 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.28 6.16 8.29 -40.82 -0.34 5.83 16 35 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 36 H 0.09 1.80 8.03 -52.48 -0.42 1.38 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -27.43 313.64 -8.82 -36.25 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.03 Total: 9.41 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -5.25 Total: -29.56 kcal Atomic # 7 Polarization: -18.68 SS G_CDS: 0.61 Total: -18.07 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.84 Total: -15.04 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.43 -8.82 -36.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243203282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.252 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds