Wall clock time and date at job start Tue Mar 31 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37634 * 120.06149 * 2 1 4 4 C 1.39817 * 119.87003 * 180.24756 * 3 2 1 5 5 C 1.47583 * 120.01044 * 179.76557 * 4 3 2 6 6 O 1.21483 * 119.99792 * 359.97438 * 5 4 3 7 7 O 1.34748 * 119.99825 * 179.97438 * 5 4 3 8 8 C 1.39823 * 119.98449 * 359.74376 * 4 3 2 9 9 C 1.36568 * 120.11948 * 0.02562 * 8 4 3 10 10 C 1.39764 * 120.13189 * 359.95381 * 9 8 4 11 11 C 1.47875 * 119.99666 * 180.02562 * 10 9 8 12 12 C 1.39987 * 119.88664 * 129.72195 * 11 10 9 13 13 C 1.36231 * 120.12036 * 180.28482 * 12 11 10 14 14 C 1.40956 * 119.87956 * 359.97438 * 13 12 11 15 15 C 1.40982 * 120.11356 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00427 * 24.69690 * 15 14 13 17 17 C 1.40098 * 119.99453 * 204.70134 * 15 14 13 18 18 N 1.30742 * 120.00686 * 17.93782 * 17 15 14 19 19 Si 1.86807 * 119.99516 * 197.93817 * 17 15 14 20 20 H 1.48502 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46724 * 120.00027 * 19 17 15 22 22 H 1.48495 * 109.47114 * 239.99702 * 19 17 15 23 23 C 1.40959 * 119.77163 * 0.02562 * 14 13 12 24 24 C 1.36226 * 119.88109 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.47565 * 270.25968 * 1 2 3 26 26 H 1.09002 * 109.47039 * 30.25809 * 1 2 3 27 27 H 1.09004 * 109.47059 * 150.25625 * 1 2 3 28 28 H 1.08003 * 120.06624 * 0.02562 * 3 2 1 29 29 H 0.96698 * 116.99650 * 179.97438 * 7 5 4 30 30 H 1.07998 * 119.94279 * 179.97438 * 8 4 3 31 31 H 1.08000 * 119.93723 * 179.97438 * 9 8 4 32 32 H 1.08002 * 119.94256 * 0.25977 * 12 11 10 33 33 H 1.07996 * 120.06229 * 179.97438 * 13 12 11 34 34 H 0.96999 * 120.00096 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.05970 * 179.97438 * 23 14 13 36 36 H 1.08006 * 119.94429 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1912 0.0000 4 6 3.5946 1.1865 -0.0052 5 6 4.3370 2.4620 -0.0105 6 8 3.7332 3.5162 -0.0107 7 8 5.6845 2.4572 -0.0150 8 6 4.2894 -0.0269 -0.0050 9 6 3.6047 -1.2086 -0.0003 10 6 2.2071 -1.2096 0.0054 11 6 1.4688 -2.4909 0.0111 12 6 0.4523 -2.7060 0.9493 13 6 -0.2270 -3.8868 0.9626 14 6 0.0950 -4.8927 0.0291 15 6 -0.6052 -6.1163 0.0380 16 1 -1.6042 -6.1639 0.4455 17 6 -0.0048 -7.2706 -0.4815 18 7 1.2912 -7.3152 -0.6481 19 14 -1.0562 -8.7462 -0.9365 20 1 -2.4825 -8.4434 -0.6549 21 1 -0.8902 -9.0455 -2.3815 22 1 -0.6318 -9.9223 -0.1354 23 6 1.1194 -4.6710 -0.9134 24 6 1.7925 -3.4866 -0.9182 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6585 2.1277 0.0004 29 1 6.1265 3.3173 -0.0187 30 1 5.3693 -0.0297 -0.0095 31 1 4.1443 -2.1441 -0.0006 32 1 0.2064 -1.9347 1.6641 33 1 -1.0107 -4.0519 1.6870 34 1 1.7067 -8.1143 -1.0082 35 1 1.3702 -5.4386 -1.6305 36 1 2.5774 -3.3155 -1.6402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243203282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:47 Heat of formation + Delta-G solvation = -77.465792 kcal Electronic energy + Delta-G solvation = -20422.609498 eV Core-core repulsion = 17220.766193 eV Total energy + Delta-G solvation = -3201.843304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44381 -40.32963 -38.87275 -37.06694 -35.77280 -33.98622 -33.03973 -31.32832 -30.70849 -28.08296 -27.36726 -25.07029 -23.16287 -22.64922 -22.23102 -21.30107 -19.28996 -18.91519 -18.19451 -17.44096 -16.92551 -16.62805 -16.24948 -15.78752 -15.27299 -15.26064 -14.89612 -14.53497 -14.29931 -14.12686 -13.89263 -13.66859 -13.39203 -13.02957 -12.95365 -12.85505 -12.70514 -12.53379 -12.39788 -12.12901 -11.93039 -11.71755 -11.41584 -11.30938 -11.10012 -10.02853 -9.73348 -9.45152 -9.00278 -8.70214 -6.34713 -0.38864 0.45249 0.87928 1.20599 1.38845 1.43609 1.53880 1.65426 2.10796 2.18581 2.64279 2.87382 3.69832 3.86704 3.96723 4.00930 4.21003 4.29392 4.42269 4.46128 4.51121 4.81981 4.86183 4.89903 4.99393 5.03445 5.10400 5.24422 5.29591 5.34344 5.36262 5.46617 5.57875 5.65553 5.73350 5.85211 6.06137 6.08312 6.20558 6.33007 6.65082 6.87884 6.99480 6.99813 8.24956 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.040807 B = 0.003373 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.984566 B = 8298.796384 C = 8797.489279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.051 4.051 4 C -0.165 4.165 5 C 0.540 3.460 6 O -0.551 6.551 7 O -0.503 6.503 8 C -0.052 4.052 9 C -0.144 4.144 10 C 0.030 3.970 11 C -0.201 4.201 12 C -0.056 4.056 13 C -0.245 4.245 14 C 0.090 3.910 15 C -0.488 4.488 16 H 0.079 0.921 17 C 0.036 3.964 18 N -0.812 5.812 19 Si 0.982 3.018 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.265 1.265 23 C -0.194 4.194 24 C -0.077 4.077 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.141 0.859 29 H 0.432 0.568 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.291 0.709 35 H 0.102 0.898 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 10.739 -0.086 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.110 4.110 3 C -0.069 4.069 4 C -0.166 4.166 5 C 0.386 3.614 6 O -0.444 6.444 7 O -0.317 6.317 8 C -0.070 4.070 9 C -0.162 4.162 10 C 0.030 3.970 11 C -0.202 4.202 12 C -0.074 4.074 13 C -0.265 4.265 14 C 0.087 3.913 15 C -0.516 4.516 16 H 0.097 0.903 17 C -0.181 4.181 18 N -0.437 5.437 19 Si 0.803 3.197 20 H -0.181 1.181 21 H -0.189 1.189 22 H -0.190 1.190 23 C -0.213 4.213 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.159 0.841 29 H 0.294 0.706 30 H 0.173 0.827 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.862 10.483 -0.148 11.556 hybrid contribution 0.006 -0.392 -0.163 0.425 sum 4.868 10.090 -0.311 11.207 Atomic orbital electron populations 1.20829 0.89807 1.02995 1.02854 1.20093 0.97249 0.91380 1.02281 1.21101 0.92277 0.98214 0.95301 1.19091 0.93328 0.91005 1.13177 1.20773 0.80959 0.88706 0.70923 1.90851 1.70491 1.34410 1.48687 1.84536 1.19557 1.42466 1.85143 1.21185 1.01170 0.90273 0.94351 1.21167 0.93254 0.98915 1.02858 1.19232 0.93192 0.92204 0.92399 1.18238 1.03617 0.94529 1.03841 1.20566 0.94004 0.95983 0.96826 1.20853 1.06131 0.96819 1.02678 1.18036 0.91094 0.92841 0.89285 1.19950 1.02155 0.93580 1.35946 0.90253 1.26824 0.95960 1.03157 0.92115 1.69832 1.11766 1.30564 1.31527 0.85155 0.79293 0.76398 0.78903 1.18066 1.18853 1.18988 1.20932 1.01841 0.96980 1.01577 1.20649 0.98213 0.92929 0.97764 0.90458 0.90239 0.92124 0.84132 0.70568 0.82709 0.85173 0.86645 0.88177 0.89781 0.88044 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 8.45 71.24 0.60 -2.42 16 2 C -0.11 -3.39 5.87 -19.64 -0.12 -3.50 16 3 C -0.05 -1.44 9.24 22.51 0.21 -1.23 16 4 C -0.16 -4.48 5.88 -20.05 -0.12 -4.59 16 5 C 0.54 13.40 8.27 70.29 0.58 13.98 16 6 O -0.55 -16.42 17.12 19.89 0.34 -16.08 16 7 O -0.50 -8.63 12.66 -56.59 -0.72 -9.35 16 8 C -0.05 -1.35 9.55 22.26 0.21 -1.14 16 9 C -0.14 -4.42 9.43 22.25 0.21 -4.21 16 10 C 0.03 1.04 5.47 -19.99 -0.11 0.93 16 11 C -0.20 -8.23 4.72 -19.88 -0.09 -8.32 16 12 C -0.06 -2.31 7.84 22.23 0.17 -2.14 16 13 C -0.25 -11.49 9.73 22.47 0.22 -11.27 16 14 C 0.09 4.67 5.57 -21.27 -0.12 4.55 16 15 C -0.49 -25.24 9.03 23.39 0.21 -25.03 16 16 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.75 5.13 85.31 0.44 2.19 16 18 N -0.81 -40.66 10.96 21.85 0.24 -40.42 16 19 Si 0.98 36.41 29.60 68.60 2.03 38.44 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 23 C -0.19 -9.82 8.63 22.47 0.19 -9.62 16 24 C -0.08 -3.44 9.42 22.23 0.21 -3.23 16 25 H 0.08 1.98 7.50 -2.39 -0.02 1.96 16 26 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 27 H 0.06 1.95 6.47 -2.39 -0.02 1.94 16 28 H 0.14 3.66 7.64 -2.91 -0.02 3.63 16 29 H 0.43 3.13 9.11 -74.06 -0.67 2.45 16 30 H 0.16 3.22 7.59 -2.91 -0.02 3.19 16 31 H 0.13 3.91 8.03 -2.91 -0.02 3.89 16 32 H 0.12 4.16 6.86 -2.91 -0.02 4.14 16 33 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.29 13.07 8.29 -92.71 -0.77 12.30 16 35 H 0.10 5.38 6.16 -2.91 -0.02 5.37 16 36 H 0.10 4.22 8.03 -2.91 -0.02 4.20 16 Total: -1.00 -60.40 313.64 5.05 -55.36 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.45 Total: 27.13 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 2.70 Total: -55.08 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.24 Total: -40.42 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.38 Total: -25.43 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -60.40 5.05 -55.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243203282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.109 kcal (2) G-P(sol) polarization free energy of solvation -60.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds