Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37668 * 120.01502 * 2 1 4 4 C 1.39481 * 120.02819 * 179.97438 * 3 2 1 5 5 C 1.48301 * 119.96502 * 179.97438 * 4 3 2 6 6 C 1.39779 * 120.01183 * 359.72425 * 5 4 3 7 7 C 1.38370 * 120.37808 * 180.27774 * 6 5 4 8 8 C 1.37736 * 120.38393 * 359.97438 * 7 6 5 9 9 C 1.40756 * 120.00441 * 0.02562 * 8 7 6 10 10 C 1.41425 * 120.18216 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99851 * 154.15589 * 10 9 8 12 12 C 1.39937 * 120.00133 * 334.14713 * 10 9 8 13 13 N 1.30830 * 119.99992 * 344.62497 * 12 10 9 14 14 Si 1.86801 * 119.99805 * 164.61827 * 12 10 9 15 15 H 1.48504 * 109.46652 * 60.00695 * 14 12 10 16 16 H 1.48500 * 109.46869 * 179.97438 * 14 12 10 17 17 H 1.48489 * 109.47421 * 300.00288 * 14 12 10 18 18 C 1.38813 * 120.00305 * 180.02562 * 5 4 3 19 19 C 1.39524 * 120.06479 * 0.27102 * 4 3 2 20 20 C 1.37625 * 120.02803 * 359.45002 * 19 4 3 21 21 C 1.39746 * 120.01582 * 179.97438 * 2 1 3 22 22 C 1.47598 * 120.02800 * 0.02562 * 21 2 1 23 23 O 1.21482 * 120.00154 * 5.59842 * 22 21 2 24 24 O 1.34739 * 119.99782 * 185.60356 * 22 21 2 25 25 H 1.09003 * 109.47499 * 97.16858 * 1 2 3 26 26 H 1.09004 * 109.47103 * 217.16655 * 1 2 3 27 27 H 1.08999 * 109.47581 * 337.16269 * 1 2 3 28 28 H 1.07997 * 119.98335 * 359.95539 * 3 2 1 29 29 H 1.08008 * 119.80923 * 0.25145 * 6 5 4 30 30 H 1.07992 * 119.80538 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.99333 * 179.97438 * 8 7 6 32 32 H 0.97000 * 119.99702 * 179.97438 * 13 12 10 33 33 H 1.08002 * 120.19066 * 359.74842 * 18 5 4 34 34 H 1.07997 * 119.98503 * 179.72396 * 19 4 3 35 35 H 1.07997 * 120.01916 * 180.27198 * 20 19 4 36 36 H 0.96700 * 116.99876 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1921 0.0000 4 6 3.5904 1.1924 0.0005 5 6 4.3309 2.4773 0.0000 6 6 3.6312 3.6874 -0.0069 7 6 4.3144 4.8907 -0.0133 8 6 5.6916 4.9098 -0.0124 9 6 6.4124 3.7009 -0.0055 10 6 7.8266 3.7162 -0.0040 11 1 8.3751 2.8824 0.4086 12 6 8.5150 4.8116 -0.5372 13 7 7.8875 5.6714 -1.2978 14 14 10.3300 5.0462 -0.1627 15 1 11.0926 3.8700 -0.6530 16 1 10.8211 6.2720 -0.8420 17 1 10.5193 5.1827 1.3037 18 6 5.7190 2.4786 0.0000 19 6 4.2897 -0.0150 -0.0046 20 6 3.6038 -1.2081 0.0012 21 6 2.2060 -1.2100 0.0005 22 6 1.4690 -2.4888 0.0005 23 8 0.2586 -2.4923 -0.1026 24 8 2.1388 -3.6524 0.1150 25 1 -0.3634 -0.1282 -1.0196 26 1 -0.3633 -0.8190 0.6209 27 1 -0.3634 0.9471 0.3988 28 1 1.6556 2.1273 -0.0007 29 1 2.5511 3.6831 -0.0077 30 1 3.7645 5.8201 -0.0190 31 1 6.2184 5.8526 -0.0178 32 1 8.3647 6.4309 -1.6671 33 1 6.2629 1.5455 0.0045 34 1 5.3697 -0.0132 -0.0087 35 1 4.1453 -2.1426 0.0016 36 1 1.6129 -4.4639 0.1104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243215382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = -57.589579 kcal Electronic energy + Delta-G solvation = -20387.854220 eV Core-core repulsion = 17186.872813 eV Total energy + Delta-G solvation = -3200.981407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48731 -38.90897 -37.28667 -36.15977 -33.97027 -32.65486 -31.72167 -30.01992 -28.46414 -27.13670 -25.32399 -24.02904 -22.22685 -21.58398 -20.35769 -19.63548 -18.07655 -17.36577 -17.16491 -15.72954 -15.63107 -15.04956 -14.98912 -14.76507 -13.96266 -13.49133 -13.47584 -13.23173 -13.05308 -12.95492 -12.38445 -12.24804 -12.16084 -11.70624 -11.54638 -11.49442 -11.29437 -11.11250 -11.03860 -10.61676 -10.48165 -10.13332 -9.81914 -9.48457 -9.34995 -8.94190 -8.59099 -7.61254 -7.15773 -6.82557 -4.47327 0.72247 1.59517 2.37728 2.72350 3.02139 3.03361 3.04965 3.06931 3.18122 3.87226 4.06495 4.59736 4.90783 4.94887 5.13411 5.23713 5.53617 5.57932 5.64219 5.76639 5.82368 5.92436 6.01888 6.14437 6.27939 6.35353 6.43985 6.50014 6.64427 6.69949 6.79612 6.91096 7.06208 7.16570 7.22508 7.42660 7.69462 7.89096 7.89866 7.91541 8.13203 8.49714 8.77944 8.81684 10.12049 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.003549 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.998746 B = 7888.605158 C = 8715.369254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.014 4.014 3 C -0.142 4.142 4 C 0.040 3.960 5 C -0.057 4.057 6 C -0.211 4.211 7 C -0.111 4.111 8 C -0.145 4.145 9 C 0.104 3.896 10 C -0.464 4.464 11 H 0.078 0.922 12 C 0.075 3.925 13 N -0.797 5.797 14 Si 0.910 3.090 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.194 4.194 19 C -0.145 4.145 20 C -0.052 4.052 21 C -0.165 4.165 22 C 0.529 3.471 23 O -0.519 6.519 24 O -0.515 6.515 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.282 0.718 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -9.586 1.958 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.015 4.015 3 C -0.160 4.160 4 C 0.040 3.960 5 C -0.057 4.057 6 C -0.230 4.230 7 C -0.129 4.129 8 C -0.165 4.165 9 C 0.102 3.898 10 C -0.494 4.494 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.423 5.423 14 Si 0.735 3.265 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.213 4.213 19 C -0.163 4.163 20 C -0.071 4.071 21 C -0.166 4.166 22 C 0.376 3.624 23 O -0.410 6.410 24 O -0.327 6.327 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.152 0.848 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.279 -9.009 1.778 11.718 hybrid contribution 0.566 -0.318 -0.025 0.650 sum -6.712 -9.327 1.753 11.624 Atomic orbital electron populations 1.21085 0.90353 1.02891 1.03312 1.19867 0.96365 0.91215 0.94008 1.21122 0.93636 0.97275 1.03922 1.19474 0.92702 0.93658 0.90196 1.18342 0.93216 0.90180 1.04002 1.20488 0.97222 0.91980 1.13344 1.20664 0.94939 0.95880 1.01443 1.21527 0.92291 0.99134 1.03532 1.17550 0.93429 0.90531 0.88318 1.19536 0.91298 1.03335 1.35232 0.90360 1.25894 1.00991 0.94736 0.92581 1.69785 1.38712 1.11320 1.22465 0.86332 0.81841 0.78528 0.79842 1.18973 1.20319 1.18801 1.21169 0.91850 0.97431 1.10852 1.21318 1.00899 0.91173 1.02866 1.21280 0.92423 0.98674 0.94688 1.18735 0.93554 0.89350 1.14949 1.21003 0.85378 0.84166 0.71882 1.90815 1.15372 1.87687 1.47175 1.84601 1.45372 1.17075 1.85627 0.90807 0.89299 0.92110 0.84837 0.88794 0.88922 0.86055 0.90725 0.88196 0.84669 0.84916 0.73330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.70 36.00 0.31 -1.26 16 2 C -0.01 -0.21 5.91 -104.27 -0.62 -0.83 16 3 C -0.14 -2.31 9.03 -39.33 -0.36 -2.67 16 4 C 0.04 0.73 5.88 -104.81 -0.62 0.11 16 5 C -0.06 -1.22 5.87 -104.97 -0.62 -1.84 16 6 C -0.21 -4.45 9.43 -38.96 -0.37 -4.82 16 7 C -0.11 -2.47 10.01 -39.72 -0.40 -2.86 16 8 C -0.15 -3.61 8.68 -38.81 -0.34 -3.95 16 9 C 0.10 2.64 5.56 -106.87 -0.59 2.05 16 10 C -0.46 -11.80 9.06 -37.73 -0.34 -12.14 16 11 H 0.08 1.90 7.89 -52.49 -0.41 1.48 16 12 C 0.08 1.83 5.18 -17.34 -0.09 1.74 16 13 N -0.80 -19.94 10.90 55.55 0.61 -19.33 16 14 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 18 C -0.19 -4.48 9.17 -38.51 -0.35 -4.83 16 19 C -0.14 -2.37 9.40 -39.33 -0.37 -2.74 16 20 C -0.05 -0.76 9.60 -39.23 -0.38 -1.13 16 21 C -0.16 -2.44 5.88 -104.94 -0.62 -3.05 16 22 C 0.53 7.09 8.20 34.55 0.28 7.38 16 23 O -0.52 -7.73 14.10 -19.25 -0.27 -8.00 16 24 O -0.52 -5.23 12.68 -40.60 -0.51 -5.75 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.21 5.87 -51.93 -0.30 0.91 16 27 H 0.06 0.69 8.03 -51.93 -0.42 0.28 16 28 H 0.13 2.03 6.16 -52.49 -0.32 1.70 16 29 H 0.09 1.73 6.17 -52.48 -0.32 1.40 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 32 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 33 H 0.10 2.13 6.18 -52.49 -0.32 1.81 16 34 H 0.14 2.13 6.18 -52.49 -0.32 1.80 16 35 H 0.13 1.61 7.61 -52.49 -0.40 1.21 16 36 H 0.41 2.15 9.11 45.56 0.42 2.56 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -28.13 307.99 -8.74 -36.87 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -2.72 Total: 9.39 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -5.45 Total: -30.85 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.61 Total: -19.33 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.79 Total: -13.75 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.13 -8.74 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243215382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.717 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds