Wall clock time and date at job start Tue Mar 31 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36625 * 120.00224 * 2 1 4 4 C 1.39796 * 119.99971 * 180.02562 * 3 2 1 5 5 C 1.47741 * 119.99283 * 179.97438 * 4 3 2 6 6 C 1.39231 * 120.34347 * 309.99659 * 5 4 3 7 7 C 1.38079 * 119.98007 * 179.97438 * 6 5 4 8 8 C 1.38937 * 120.68058 * 359.97438 * 7 6 5 9 9 C 1.36437 * 120.69822 * 0.02562 * 8 7 6 10 10 C 1.40762 * 119.99258 * 359.73822 * 9 8 7 11 11 C 1.40826 * 120.33276 * 180.25670 * 10 9 8 12 12 H 1.08005 * 119.99768 * 150.27547 * 11 10 9 13 13 C 1.40150 * 120.00420 * 330.28339 * 11 10 9 14 14 N 1.30719 * 119.99921 * 349.66391 * 13 11 10 15 15 Si 1.86797 * 120.00458 * 169.66772 * 13 11 10 16 16 H 1.48507 * 109.47216 * 89.99510 * 15 13 11 17 17 H 1.48498 * 109.47453 * 209.99807 * 15 13 11 18 18 H 1.48503 * 109.46952 * 329.99907 * 15 13 11 19 19 C 1.39830 * 120.00815 * 359.97438 * 4 3 2 20 20 C 1.36583 * 120.00394 * 0.02562 * 19 4 3 21 21 C 1.39819 * 119.99775 * 180.02562 * 2 1 3 22 22 C 1.47558 * 120.00419 * 359.70363 * 21 2 1 23 23 O 1.21497 * 120.00003 * 353.61311 * 22 21 2 24 24 O 1.34754 * 119.99824 * 173.61243 * 22 21 2 25 25 H 1.09003 * 109.47327 * 263.34539 * 1 2 3 26 26 H 1.09004 * 109.47236 * 23.34588 * 1 2 3 27 27 H 1.09003 * 109.47601 * 143.34208 * 1 2 3 28 28 H 1.07994 * 119.99401 * 0.03644 * 3 2 1 29 29 H 1.08003 * 120.00798 * 0.02562 * 6 5 4 30 30 H 1.07995 * 119.65877 * 179.97438 * 7 6 5 31 31 H 1.07996 * 119.64479 * 179.97438 * 8 7 6 32 32 H 1.08007 * 120.00051 * 179.97438 * 9 8 7 33 33 H 0.97000 * 119.99969 * 180.02562 * 14 13 11 34 34 H 1.07998 * 119.99939 * 179.97438 * 19 4 3 35 35 H 1.07999 * 120.00605 * 180.02562 * 20 19 4 36 36 H 0.96701 * 116.99345 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1832 0.0000 4 6 3.5881 1.1831 -0.0005 5 6 4.3267 2.4627 -0.0011 6 6 4.0091 3.4577 -0.9217 7 6 4.7039 4.6509 -0.9152 8 6 5.7218 4.8736 0.0039 9 6 6.0560 3.9177 0.9183 10 6 5.3632 2.6926 0.9407 11 6 5.6986 1.7030 1.8849 12 1 4.9432 1.0178 2.2405 13 6 7.0124 1.6075 2.3633 14 7 7.9672 2.2943 1.7930 15 14 7.3992 0.4985 3.8159 16 1 7.7436 -0.8597 3.3239 17 1 8.5483 1.0569 4.5728 18 1 6.2132 0.4167 4.7058 19 6 4.2874 -0.0278 -0.0005 20 6 3.6047 -1.2107 -0.0005 21 6 2.2060 -1.2109 -0.0005 22 6 1.4683 -2.4888 0.0055 23 8 0.2595 -2.4919 0.1280 24 8 2.1353 -3.6524 -0.1248 25 1 -0.3634 -0.1191 1.0207 26 1 -0.3634 0.9436 -0.4073 27 1 -0.3634 -0.8244 -0.6135 28 1 1.6501 2.1184 0.0006 29 1 3.2190 3.2966 -1.6402 30 1 4.4535 5.4190 -1.6319 31 1 6.2546 5.8129 -0.0063 32 1 6.8495 4.1026 1.6273 33 1 8.8766 2.2279 2.1239 34 1 5.3674 -0.0277 -0.0014 35 1 4.1447 -2.1460 -0.0001 36 1 1.6089 -4.4636 -0.1147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243215418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:49 Heat of formation + Delta-G solvation = -58.382046 kcal Electronic energy + Delta-G solvation = -21083.107062 eV Core-core repulsion = 17882.091291 eV Total energy + Delta-G solvation = -3201.015771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26279 -38.72321 -37.23775 -35.94781 -33.84259 -32.58983 -31.63986 -29.76557 -28.57596 -26.81149 -25.48231 -23.75823 -21.90971 -21.10069 -20.70002 -19.41046 -17.86490 -17.41652 -16.85004 -15.71268 -15.51468 -15.11130 -14.76068 -14.28523 -13.95196 -13.56136 -13.32688 -13.09578 -12.75054 -12.72862 -12.57539 -12.05070 -11.76712 -11.60970 -11.47817 -11.33838 -11.23003 -11.12144 -10.82914 -10.60345 -10.48469 -9.95883 -9.78851 -9.52595 -9.37010 -8.52337 -8.27375 -7.51411 -7.34047 -6.88224 -4.52621 1.07352 1.97248 2.56452 2.75745 2.99522 3.04307 3.08302 3.12742 3.28904 3.82124 4.31702 4.51400 5.20256 5.22032 5.42375 5.53781 5.58274 5.87269 5.97532 6.02393 6.07244 6.09889 6.20426 6.26812 6.39719 6.52145 6.59016 6.71748 6.85372 6.90806 6.96288 7.05920 7.13665 7.29907 7.42765 7.44641 7.74726 7.89378 7.94885 8.10325 8.11201 8.45285 8.69221 8.77846 10.02544 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.006136 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.169438 B = 4561.890473 C = 6034.361335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.016 4.016 3 C -0.152 4.152 4 C 0.074 3.926 5 C -0.200 4.200 6 C -0.068 4.068 7 C -0.239 4.239 8 C -0.100 4.100 9 C -0.152 4.152 10 C 0.134 3.866 11 C -0.449 4.449 12 H 0.083 0.917 13 C 0.075 3.925 14 N -0.791 5.791 15 Si 0.907 3.093 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.259 1.259 19 C -0.123 4.123 20 C -0.060 4.060 21 C -0.174 4.174 22 C 0.529 3.471 23 O -0.525 6.525 24 O -0.516 6.516 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.283 0.717 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -5.535 -1.841 8.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.017 4.017 3 C -0.170 4.170 4 C 0.074 3.926 5 C -0.202 4.202 6 C -0.086 4.086 7 C -0.258 4.258 8 C -0.119 4.119 9 C -0.171 4.171 10 C 0.131 3.869 11 C -0.478 4.478 12 H 0.101 0.899 13 C -0.143 4.143 14 N -0.415 5.415 15 Si 0.731 3.269 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.183 1.183 19 C -0.141 4.141 20 C -0.079 4.079 21 C -0.175 4.175 22 C 0.376 3.624 23 O -0.417 6.417 24 O -0.327 6.327 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -5.482 -5.133 -1.792 7.721 hybrid contribution 0.096 -0.961 0.651 1.164 sum -5.386 -6.094 -1.141 8.212 Atomic orbital electron populations 1.21052 0.90820 1.02474 1.03041 1.19531 0.96032 0.91396 0.94714 1.20911 0.93782 0.96909 1.05440 1.19174 0.91798 0.93564 0.88073 1.18650 1.05694 0.93491 1.02345 1.20594 0.97762 0.93109 0.97139 1.20320 1.02883 0.98191 1.04412 1.20538 0.96947 0.98013 0.96385 1.21124 1.02462 0.92913 1.00629 1.17534 0.88185 0.91759 0.89435 1.19603 0.94789 1.13558 1.19847 0.89911 1.25949 0.96101 0.95614 0.96662 1.69733 1.01864 1.34150 1.35777 0.86307 0.79091 0.80348 0.81170 1.19162 1.20001 1.18317 1.21199 1.01288 0.90901 1.00669 1.21033 0.92318 0.98830 0.95671 1.18681 0.93543 0.89055 1.16220 1.21093 0.85344 0.84159 0.71767 1.90798 1.15569 1.87708 1.47581 1.84627 1.45457 1.17062 1.85566 0.91097 0.92456 0.89593 0.85746 0.88988 0.89216 0.89292 0.86103 0.90577 0.84479 0.85460 0.73676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.70 36.00 0.31 -1.44 16 2 C -0.02 -0.28 5.88 -104.62 -0.61 -0.90 16 3 C -0.15 -2.79 9.07 -39.58 -0.36 -3.15 16 4 C 0.07 1.52 4.93 -104.84 -0.52 1.00 16 5 C -0.20 -4.54 5.52 -104.24 -0.58 -5.11 16 6 C -0.07 -1.44 9.50 -39.27 -0.37 -1.82 16 7 C -0.24 -5.05 10.03 -39.38 -0.39 -5.44 16 8 C -0.10 -2.22 9.96 -39.97 -0.40 -2.62 16 9 C -0.15 -3.70 8.59 -39.28 -0.34 -4.04 16 10 C 0.13 3.29 5.54 -106.56 -0.59 2.70 16 11 C -0.45 -10.92 7.02 -37.89 -0.27 -11.19 16 12 H 0.08 2.00 6.81 -52.48 -0.36 1.64 16 13 C 0.08 1.76 5.26 -17.31 -0.09 1.66 16 14 N -0.79 -18.99 10.88 55.56 0.60 -18.39 16 15 Si 0.91 17.77 29.57 -169.99 -5.03 12.75 16 16 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 19 C -0.12 -2.39 8.02 -39.58 -0.32 -2.71 16 20 C -0.06 -1.04 9.56 -39.57 -0.38 -1.42 16 21 C -0.17 -2.97 5.88 -104.90 -0.62 -3.59 16 22 C 0.53 8.20 8.19 34.53 0.28 8.49 16 23 O -0.52 -8.79 14.12 -19.26 -0.27 -9.06 16 24 O -0.52 -6.31 12.69 -40.64 -0.52 -6.83 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 27 H 0.09 1.32 5.87 -51.93 -0.30 1.01 16 28 H 0.12 2.12 8.03 -52.49 -0.42 1.70 16 29 H 0.09 1.74 8.04 -52.48 -0.42 1.32 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 3.03 6.27 -52.48 -0.33 2.70 16 33 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 34 H 0.14 2.82 7.32 -52.49 -0.38 2.43 16 35 H 0.13 1.94 7.61 -52.49 -0.40 1.54 16 36 H 0.41 2.90 9.11 45.56 0.42 3.31 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -26.94 309.86 -8.80 -35.74 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.02 Total: 10.69 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -5.23 Total: -29.57 kcal Atomic # 7 Polarization: -18.99 SS G_CDS: 0.60 Total: -18.39 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.79 Total: -15.89 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.94 -8.80 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243215418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.641 kcal (2) G-P(sol) polarization free energy of solvation -26.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds